Cervus canadensis (wapiti): 122433366
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Entry
122433366 CDS
T07554
Symbol
CIITA
Name
(RefSeq) MHC class II transactivator isoform X1
KO
K08060
MHC class II transactivator [EC:
2.7.11.1
]
Organism
ccad
Cervus canadensis (wapiti)
Pathway
ccad04612
Antigen processing and presentation
ccad05145
Toxoplasmosis
ccad05152
Tuberculosis
ccad05164
Influenza A
ccad05340
Primary immunodeficiency
Brite
KEGG Orthology (KO) [BR:
ccad00001
]
09150 Organismal Systems
09151 Immune system
04612 Antigen processing and presentation
122433366 (CIITA)
09160 Human Diseases
09172 Infectious disease: viral
05164 Influenza A
122433366 (CIITA)
09171 Infectious disease: bacterial
05152 Tuberculosis
122433366 (CIITA)
09174 Infectious disease: parasitic
05145 Toxoplasmosis
122433366 (CIITA)
09163 Immune disease
05340 Primary immunodeficiency
122433366 (CIITA)
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
ccad01001
]
122433366 (CIITA)
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
ccad04054
]
122433366 (CIITA)
Enzymes [BR:
ccad01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
122433366 (CIITA)
Protein kinases [BR:
ccad01001
]
Serine/threonine kinases: Other
TAF1 family
122433366 (CIITA)
Pattern recognition receptors [BR:
ccad04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
122433366 (CIITA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NACHT
LRR_6
LRR_4
NLRC4_HD2
LRR_8
LRR_14
LRR_9
LRR_Zer-1
Motif
Other DBs
NCBI-GeneID:
122433366
NCBI-ProteinID:
XP_043312145
LinkDB
All DBs
Position
32:complement(4718734..4775160)
Genome browser
AA seq
1206 aa
AA seq
DB search
MNHFQTILTQVRMLLSSHRPSQVQALLDNLLAEELLSREYHYALLHESDGEALARKISLT
LLEKGDPDLALLGWIWSGLQAPTAERDPSYKDPGGSEQCPTMELGPLEGSYLELLNSSAD
PLQLYHLYDRMDLTGEEEIELCSEPDTDTINCEQFSRLLCDMEGDEETREAYANIAELDQ
YVFQDTQLEGLSKDIFIEHIGLEEMISESVEVLEEAGQKSQKRPFPEEVPVDLKHRKLAE
PLTMPVVTGTFLVGPVSDSLAQPCPPPPALFNTEPASSQTRLKDPAPPSSSLLSCLSLPA
GSIQIIPTLPTLPQGLWPISGTGTGVSSILIYQGEMPPASQTPPSSDPAVQSLPKSPDRP
GSASPFAPSAADLPSMPEPALTSRANLTEDEMSPTKCPAADRASSKLPKWPESVEQFYQS
LRDKYQAQPAGPEGTLVEMELVRVRLEKSSGKSQERELATLDWAERQPAQGGLAEVLLAA
RDRRQPRETWVIAVLGKAGHGKSHWARAVSRAWARGQLPQYDFVFCIPCHCLDRPGTSYR
LQDLLSSLGPQPLPVDDEVFSYIVRRPNRVLLILDAFEELEAHDGSLHSAGGPGSAEPRS
LRGLLAGLLQRKLLRGCTLLLTARPRGRLAQSLSKADALFEVAGFSAQQAETYVRHYFES
EGTAEHQERALALLRARPFLLSHSHSPTVCRAVCQLAEALLQRSGEAQLPSTLTGLYVGL
LGPAARDSPPGALAGLARLAWELGRAHQSGLKEDRFPSAEARAWAVAQGWLQPTPGAPET
ELAFSSFLLQCFLGAVWLALSGEIKDKELPQYLALTPRKKRPYDNWLEGVPRFLVGLVFQ
PRAGCLGALAGPAASALADRKQKVLTRYLKRLQPGTLQAGRLLELLHCAHEALDPGLWQH
VLQGLPARLSFLGTRLTPPDTHVLGRALEAAGRDFSLDLRSTGVDPSGLGSLVGLRCVAR
FRAALSDTVELWESLQERGEAKLLRAVEEKFTIEPFKAKSMKDVEDLGNLVQIQRTRSSS
EEAAGELPAVRDLKKLEFALGPVLGPQVFPKLVKILEAFTSLQHLDLDSLSENKIGDEGV
AQLATTFPQLKALETLNLSQNNITDVGACKLAEALPALAASLLRLSLYNNCICDAGAESL
AHVLPDMVSLRVLDVQYNKFTAAGAQQLAAGLRKCPQVKTLAMWTPTIPFGVQEHLQQLD
PRIILR
NT seq
3621 nt
NT seq
+upstream
nt +downstream
nt
atgaatcacttccagaccatcctgactcaggtccggatgttgctctctagccatcggccg
agccaagtgcaggcgcttctggataacctgctggcagaagagctcctctccagggagtac
cactatgccctgctccatgagtctgatggtgaggctctggccaggaagatctccttgacc
ctgctggagaaaggagacccagacttggccctcttggggtggatctggagcgggctgcag
gcccccacagccgagagggaccccagctacaaggaccctggtggtagtgaacagtgccca
accatggagctggggcctctagaaggcagttacttagaacttctcaacagcagtgctgac
cctttgcagctctaccacctctacgaccggatggatctgacaggagaagaagagatagag
ctctgctcagagcctgacacagacaccatcaactgcgaacagttcagcaggctgttgtgt
gacatggaaggtgatgaagagaccagggaggcttatgctaatatcgcggaattggaccag
tacgtcttccaggacacccagctggagggcctgagcaaagacattttcattgagcacata
ggattggaagaaatgatcagcgagagtgtggaggtgctggaggaagcagggcagaaaagt
cagaaaagacccttcccagaggaggtgcctgtggatctgaagcaccggaagctagctgag
cccctcaccatgcccgtggtgactggcactttcctggtggggccagtgagcgactccttg
gctcagccctgcccgccgcctcctgctctgttcaacacggagccagcatccagccagacc
cggctgaaggacccggcgcccccttccagttccttgttgagctgcctgagtcttcccgcg
ggatccattcagattatccccactctccccactctgccccaggggctctggccgatctca
gggactgggacaggggtctccagtatactcatctaccaaggtgagatgcccccggccagc
caaacacccccgtccagcgaccctgctgtccagagccttcccaagtccccagaccggcct
ggctccgccagcccctttgccccgtctgctgctgatctccccagcatgcctgaaccagcc
ttgacctcccgtgcaaacctgacagaggatgagatgtcccccaccaaatgcccggcagct
gacagggcctccagcaaacttcccaagtggcctgagagcgtggagcagttctaccagtcg
ctacgggacaagtaccaggcccagcccgccggcccggaaggcaccctggtggagatggag
ctggtgagggtgaggctggagaagagcagcgggaagagccaggagagagagctggccacc
ctggactgggcagagcggcagccggcccaaggaggtctggccgaggtgctgctggctgcg
cgcgaccgccggcagccgcgtgagacgtgggtgatcgctgtgctgggcaaagcggggcac
gggaagagtcactgggcccgggccgtgagccgggcctgggcccgcggccagctaccgcag
tacgactttgtcttctgcatcccctgccactgtttggaccgtccggggacctcctaccgc
ctgcaggatctgctgtcctccctgggcccgcagccgctgccggtggacgacgaggtattt
agttacattgtgaggaggcccaaccgcgtcctgctcatcctggatgcctttgaggagctg
gaagcccacgacggctccctgcacagcgcagggggccccgggtcggcagagccccgctcc
ctccgggggctgctggcgggtctcctccagcgcaagctgctgcggggctgcaccctgctg
ctcacggcccggccgcggggccgcctggcccagagcctgagcaaggccgatgccctgttc
gaggtggccggcttctcggcccagcaggccgagacctatgtgaggcattactttgagtca
gaggggaccgccgagcaccaagagagggccctggcgctcctgcgggcccggccattcctc
ctgagtcatagccacagccccaccgtctgccgggccgtgtgccagctcgcggaggccctc
ctgcagcggagtggtgaagcccagctgccctccaccctcacgggcctctacgtgggcctg
ctaggcccagcagcgcgcgacagccccccgggggccctggcaggactggccaggctggcc
tgggagctgggccgtgcgcaccagagtggcctgaaggaggaccgcttcccgtcggcggag
gcaagggcctgggccgtggcccaaggctggttgcagcccaccccgggggccccggagact
gagctggccttctccagcttcctcctgcagtgcttcctgggggccgtgtggctggctctg
agcggcgaaatcaaggacaaggagctgccgcagtatctggccttgaccccgaggaagaag
cggccctatgacaactggctagagggcgtgccacgcttcttggtcggactggtcttccag
cctcgcgccggctgcctgggggccctggcggggccggcggcctccgcgttggcggacagg
aagcagaaggtgctcacgaggtacctgaagcggctgcagcccgggacgctgcaggcgggg
cggctgctggagctgctgcactgcgcccacgaggcgctggaccccgggctctggcagcac
gtgctgcaggggctcccggcccgcctctccttcctgggcacgcggctcacgcctcccgac
acccacgtgctgggccgcgccctggaggcggcgggccgagacttctccctggacctccgc
agcactggcgtcgacccctccggactggggagcctcgtgggactccgctgtgtcgcccgt
ttcagggctgcgttgagtgacactgtggagctgtgggaatccctgcaggagcgtggggag
gccaagctactccgggcggtggaggagaagttcaccattgagcctttcaaggccaagtcc
atgaaggatgtggaagacctcggcaatctcgtgcagatccagaggacaagaagctcctct
gaagaagcagctggggagctccctgctgtccgagacttaaagaagctggagtttgcgctg
ggccccgtcttgggcccacaggtttttcctaaattggtgaagatcctcgaggcctttact
tcccttcagcacctggacctggactcgctgagcgagaataagatcggggacgagggtgtc
gcccagctcgccaccaccttccctcagctgaaggctctggagacactcaacttgtcccag
aacaacatcaccgacgtgggtgcctgcaagctggccgaggctctgcccgcgctggccgcg
tccctcctcaggctgagcttgtacaacaactgcatctgcgacgcgggagccgagagcctg
gcgcacgtgcttccggacatggtgtccctccgggtgctagacgtccagtacaacaagttc
acagccgctggggcccagcagcttgccgctggcctgagaaagtgccctcaagtgaagaca
ctggcgatgtggacgcccaccatcccctttggcgtccaggagcacctgcagcagctggac
cccagaatcatcctgcgatga
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integrated database retrieval system
