Cervus canadensis (wapiti): 122433845
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Entry
122433845 CDS
T07554
Symbol
PNLDC1
Name
(RefSeq) poly(A)-specific ribonuclease PNLDC1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
ccad
Cervus canadensis (wapiti)
Pathway
ccad03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccad00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122433845 (PNLDC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccad03019
]
122433845 (PNLDC1)
Enzymes [BR:
ccad01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
122433845 (PNLDC1)
Messenger RNA biogenesis [BR:
ccad03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
122433845 (PNLDC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
122433845
NCBI-ProteinID:
XP_043312745
LinkDB
All DBs
Position
33:30697133..30723496
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AA seq
531 aa
AA seq
DB search
MDIGADEFEQSLPLLQELVLGADFVGLDIEFTGLRSNLSGPQQISLFDLPSEWYLKTRQS
IQQFTICQIGLSVFSSIEGESNKYVAHSCNFFLFPTTFGVLDSEFSFQASSVQFLNQYGF
DYNKFLKNGIPYMNEEQEKKIKHNILTGNWKVRSSLDKDQIKVVIDEVTRWLDLAEEGDW
MTLPGIAGFQAFEVQLVLRKALPDIWTVLRDQGVVVKKVSTQHRWYLENTSCDRESCWKE
KILLSARGFSVFFQMLVKARKPLVGHNMMMDLLHLHEKFFRPLPESYDEFKLNIHNLFPV
LIDTKNVTKDIWKELNFPRVSNLSEVYEVLNSDLNPTKNSGPVIIHASRCEKYVETKYPH
EAAYDAFLCGSVLLKVAHLLLWRVHSAIPIPEPSFPLYLDVLAPYVNQVNLIRAGVPKIN
FAGPDSPSIRPPILILTVRRWPGVSEQQVYREFQNLCKFDVRRLTRSQFLLMTNKFKDTR
SILKEYKCHPTLRVSLYRYWRHSPNINCLLRVCGIVTTWAFIAFLLGGAGP
NT seq
1596 nt
NT seq
+upstream
nt +downstream
nt
atggacataggcgccgatgagttcgagcagagtctccctctgctgcaggagctcgtcctg
ggcgcggacttcgtgggtctggacatagagttcacgggcctgcgttctaacctgtctggg
ccccagcagatcagtctgtttgacttgccatcagagtggtatctaaagacccgtcagagt
attcagcaattcaccatctgtcagatcggattgtctgtgttctccagtattgaaggcgag
tcgaacaagtacgtagctcattcatgtaacttcttcctcttccctacgacatttggggtt
ttggactcagagttctctttccaggcttccagtgttcagtttctgaaccagtacggcttc
gactataacaagtttctcaaaaatggaatcccctatatgaacgaagaacaggagaagaaa
attaagcacaacatcctgactgggaactggaaagttcgcagctctctggacaaagaccag
atcaaggtggtgattgacgaggtgacgcgctggctggacctggcagaggaaggggactgg
atgaccctccctggcatcgctggcttccaggccttcgaggtccagctcgtgctgaggaag
gccctccctgacatctggacagtgctgagagaccaaggggtggttgtgaagaaggtgagt
acgcagcaccgctggtatcttgaaaacacctcctgtgatcgagagagctgctggaaggag
aagatccttctctctgcgaggggcttttccgtgttcttccagatgctggtgaaagctcgg
aagcccttagtgggacataacatgatgatggatctgctgcatctccacgagaagttcttc
agacctctcccagaaagctacgatgaatttaagctgaatatccacaacctatttcctgtt
ctcattgacaccaagaatgtgacaaaggatatctggaaggaactcaatttcccaagggtt
tcaaatctctcagaagtttatgaagtcctgaacagtgacttgaaccccaccaagaactcc
gggccggtgatcattcacgccagcaggtgtgagaagtacgtggagaccaagtacccccac
gaagcagcatacgacgccttcctttgcgggtcagttctgttgaaggtggcgcacctcctc
ctgtggagggtacacagtgctattcccatccccgagcccagcttccccctctacctggac
gtgctggcgccctacgtgaaccaggtgaatcttatccgagccggggtccccaaaatcaac
tttgcaggcccagactcccccagcatccgcccccccatcctcatcctcaccgtcaggagg
tggccgggggtcagcgagcagcaggtctaccgcgagtttcagaacctctgcaagttcgac
gtgaggaggctcacgcggagccagttcctgctcatgaccaataagttcaaggacacgcgg
agcatcctgaaggagtataagtgccacccgacactgcgagtctccctgtaccgctactgg
agacactccccgaacatcaactgcctgctacgggtctgcggcatcgttaccacctgggcc
ttcatcgcgtttctcctgggaggagctggcccctga
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