Cervus canadensis (wapiti): 122433879
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Entry
122433879 CDS
T07554
Symbol
ARID1B
Name
(RefSeq) AT-rich interactive domain-containing protein 1B
KO
K11653
AT-rich interactive domain-containing protein 1
Organism
ccad
Cervus canadensis (wapiti)
Pathway
ccad03082
ATP-dependent chromatin remodeling
ccad04714
Thermogenesis
ccad05225
Hepatocellular carcinoma
Brite
KEGG Orthology (KO) [BR:
ccad00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
122433879 (ARID1B)
09150 Organismal Systems
09159 Environmental adaptation
04714 Thermogenesis
122433879 (ARID1B)
09160 Human Diseases
09162 Cancer: specific types
05225 Hepatocellular carcinoma
122433879 (ARID1B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ccad03000
]
122433879 (ARID1B)
03021 Transcription machinery [BR:
ccad03021
]
122433879 (ARID1B)
03036 Chromosome and associated proteins [BR:
ccad03036
]
122433879 (ARID1B)
Transcription factors [BR:
ccad03000
]
Eukaryotic type
Helix-turn-helix
ARID
122433879 (ARID1B)
Transcription machinery [BR:
ccad03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
122433879 (ARID1B)
Chromosome and associated proteins [BR:
ccad03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
122433879 (ARID1B)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BAF250_C
ARID
PFF1_TM
Motif
Other DBs
NCBI-GeneID:
122433879
NCBI-ProteinID:
XP_043312789
LinkDB
All DBs
Position
33:28149677..28559865
Genome browser
AA seq
2388 aa
AA seq
DB search
MAARAAAAARAGSGERRAPPGPRPAPGARDLEAGARGAAAPGPMLGGGDGSGLNNVHHHP
LQPRHDLNMAHNASAAAAAAASTNSAKSGGSEAEGGSAAALSSSSSSSSAAAAAAASSSS
SSSGPGSAMETGLLPNHKLKTVGEAPAAAPHQQQHLHHHHHHAHHLHHQHLHHAHHLHHL
HHHALQQQLSQFQQQQQPQQQQQHQHPISNNNSLGGAGGGTPQPGADMEQPQHGGAKDGA
APGSQAEPPGQPLLSKPGDEDDAPPKMGEPAGGRFEQPGLGALGAQQQQQQPPPPVAVPG
GGGGGGGGPAAVSEFNNYYGSAAPASGGPGGRAGPCFDQHGGQQSPGMGLMHSASAAAGA
PNSMDPLQNSHEGYPNSQYNHYPGYSRPSAGGGGGGGGGGGGGGGGGGSGGGGGGGGAGG
AGAVAAAAAAAAAAAAAGGGGGGGYGGSSSGYGVLSSPRQQGGGMMMGPGGGGAASLSKA
AAGAAAAAAAAAATGGFQRFAGQNQHPSGATPTLNQLLTSPSPMMRSYGGSYPDYSSPSA
PPPPPPPSQPQSQAAAAAAGAAAGGQQAAAGMGLGKDMGAQYAAASPAWAAAQQRSHPAM
SPGTPGPTMGRSQGSPMDPMVMKRPQLYGMGSNPHSQPQQSSPYPGGSYGPPGPQRYPIG
IQGRPPGAMGGMQYPQQQMPPQYGQQGVSGYCQQGQQPYYNQQPQPPHLPPQAPYLPSQS
QQRYQPQQDMSQEGYGTRSQPPLASGKPNHEDLNLIQQERPSSLPDLSGSIDDLPTGTEA
TLSSAVSASGSTSSQGDQSNPAQSPFSPHASPHLSSIPGGPSPSPVGSPVGSNQSRSGPI
SPASIPGSQMPPQPPGSQSESSSHPALSQSPMPQERGFMAGTQRNPQMSQYGPQQTGPSM
SPHPSPGGQMHPGISSFQQSNSSGTYGPQMSQYGPQGNYSRPPTYSGVPSASYSGPGPGM
GVNANSQMHGQGPSQPCGSMPLGRVPSAGMQNRPFPGNMSSMTPSSPGMSQQGGPGMGPP
MPTVNRKAQEAAAAVMQAAANSAQSRQGGFPGMNQSGLMASSSPYSQPMNNSSGLMNTQA
PPYSMTPNMVNSSTASMGLADMMSPSESKLPLPLKADGKEEGSAQPEGKSKDSYSSQGIS
QPPTPGNLPVPSPMSPSSASISSFHGDESDSISSPGWPKTPSSPKSSSSTTTGEKITKVY
ELGNEPERKLWVDRYLTFMEERGSPVSSLPAVGKKPLDLFRLYVCVKEIGGLAQVNKNKK
WRELATNLNVGTSSSAASSLKKQYIQYLFAFECKIERGEEPPPEVFSTGDTKKQPKLQPP
SPANSGSLQGPQTPQSTGSNSMAEVPGDLKPPTPASTPHGQVTPMQGGRSSTVSVHDPFS
DASESSFPKRNSMTPSTPYQQGMSMPDVMGRMPYEPNKDPFGGMRKVPGSSEPFMTQGQM
PTSSMQDMYNQSPSGAMSSLGMGPRQQFPYGASYDRRHEPYGQQYPGQGPPSGQPSYGGH
QPGLYPQQTNYKRHMDGMYGPPAKRHEGDMYNMQYGSQQQEMYSQYGSSYSGPDRRPLQG
QYPYPYNRERVQGPGQIQPHAIPPQMMGGPMQSSSSEGPQQSMWAARNDMPYPYQNRQGP
GGPAQAPPYPGMNRTDDMMVPDQRINHESQWPSHVSQRQPYMSSSASMQPITRPPQSSYQ
TPPSLPNHISRAPSPASFQRSLESRMSPSKSPFLPSMKMQKVMPTVPTSQVTGPPPQPPP
IRREITFPPGSVEASQPVLKQRRKITSKDIVTPEAWRVMMSLKSGLLAESTWALDTINIL
LYDDSTVATFNLSQLSGFLELLVEYFRKCLIDIFGILMEYEVGDPSQKALDHNAAKRDDS
QSLADDSGREEEDAECIEEEEEDEEDEEEEDSGRAETEDRSSTGASPDATADPKEKPRQA
SKFDKLPIKIVKKNNLFVVDRSDKLGRVQEFSSGLLHWQLGGGDTTEHIQTHFESKMEIP
PRRRPPPPLSSTGRKKDQEGKGDSDEHQEKSIIATIDDVLSARPGALPEDTNPGTQTESS
KFPFGIHQAKSHRNIKLLEDEPRSRDEAPLCTIAHWQDSLAKRCICVSNIVRSLSFVPGN
DAEMSKHPGLVLILGKLILLHHEHPERKRAPQTYEKEEDEDKGVACSKDEWWWDCLEVLR
DNTLVTLANISGQLDLSAYTESICLPILDGLLHWMVCPSAEAQDPFPTVGPNSVLSPQRL
VLETLCKLSIQDNNVDLILATPPFSRQEKFYATLVRYVGDRKNPVCREMSMALLSNLAQG
DALAARAIAVQKGSIGNLISFLEDGVTMAQYQQSQHNLMHMQPPPLEPPSVDMMCRAAKA
LLAMARVDENRSEFLLHEGRLLDISISAVLNSLVASVICDVLFQIGQL
NT seq
7167 nt
NT seq
+upstream
nt +downstream
nt
atggccgcgcgggcagcagcagcagcgcgggcgggcagcggcgagcggcgggcgcccccc
gggccgcggccggcgcccggggcccgggacctggaggcgggggcgcgcggcgcggcggcc
ccgggacccatgctggggggcggcgacggcagcggcctgaataatgtgcaccaccacccc
ctgcaaccccgtcacgatctgaacatggcccataacgcgagcgccgcggccgcggccgcc
gccagcactaacagcgccaagagcggcggctccgaggcggagggtggaagcgccgccgcg
ctgtcctcctcctcctcctcctcctccgccgcggcggcggcggcggcgtcctcctcttcc
tcctcgtcgggcccgggctcggccatggagacggggctgctccccaaccacaaactgaaa
accgttggcgaagcccccgccgcagcgccccaccagcagcagcacctccaccatcaccac
caccatgcccaccacctccaccaccaacacctccaccatgcccaccacctccaccacctc
caccaccacgcactccagcagcagctaagccagttccagcagcagcagcaaccacagcag
cagcagcagcaccaacatcccatttccaacaacaacagcctcggcggcgcgggcggcggc
acgcctcagcccggtgccgacatggagcagccgcaacatggaggcgccaaggacggtgct
gccccgggcagccaggccgagcccccgggccagccgctgctgagcaagccgggcgacgag
gacgacgcgccgcccaagatgggggagccggcgggcggccggttcgagcagccgggcctg
ggcgccctgggcgcgcagcagcagcagcaacagccgccgccgccggtcgccgtgcccggg
ggcggcggaggcggcggcggcggcccggcggccgtctcggagtttaataattactatggc
agcgctgccccagctagcggcggccccggcggccgcgctgggccttgctttgatcaacat
ggcggacaacaaagccccgggatggggctgatgcactccgcctcagctgccgccggagcc
cccaacagcatggaccccctgcagaactcccacgaagggtaccccaacagccagtacaac
cattatccgggctacagccggcccagcgcgggcggcggcggcggcggcggcggtggagga
ggaggaggaggaggaggaggaggcagcggaggaggaggaggaggaggaggagcaggagga
gcgggagctgtggcggcggcggccgcggcggcggcggcagcagcagcagcaggaggcggc
ggcggcggcggctatgggggctcgtcctcggggtacggggtgctgagctccccccggcag
cagggcggcggcatgatgatgggccccgggggcggcggggccgcgagcctcagcaaggcg
gccgccggcgcggcggcggcggcagcggcggcggcggcgacggggggcttccagcgcttc
gccgggcagaaccagcacccgtcgggggccaccccgaccctcaaccagctgctcacctcg
cccagccccatgatgaggagctacggcggcagctacccggactacagcagccccagcgcg
ccgccgccgccgccgccgccgtcgcagccccagtcccaggcggcagcagcggcggcgggg
gcggcggcgggcggccagcaggcggccgcgggcatgggcttgggcaaggacatgggcgcc
caatacgccgctgccagcccggcctgggcggccgcgcaacaaaggagccacccggcgatg
agccccggcacccccggcccgaccatgggcagatcccagggcagcccgatggatcccatg
gtgatgaagagaccccagctgtatggcatgggcagtaaccctcattctcagccacagcag
agcagcccttaccctggaggttcctacggccccccaggcccacagcggtatccaatcggc
attcaaggtcggccccccggggccatgggaggcatgcagtacccccagcagcagatgcca
cctcagtacggacagcagggtgtgagtggttactgccagcagggccagcagccttactac
aaccagcagccacagcctccgcaccttcccccgcaggcgccctatctgccctcccagtcc
cagcagaggtaccagccgcagcaggatatgtctcaggaaggctatggaactaggtctcaa
cctcctctggcttctggaaaacctaaccatgaagacttgaacttaatacagcaagaaaga
ccatcaagtttaccagacctgtctggctccattgatgacctccccacgggaacggaagca
actttgagctcagccgtcagtgcatccgggtccacgagcagccaaggagatcagagcaac
ccagctcagtcgcctttctctccgcatgcatctccccatctctccagcatccctgggggc
ccatcaccttctcctgtcggctctcctgtaggaagcaaccagtcacgatctggcccaatt
tctcctgcaagtattccaggaagtcagatgccccctcagccacctgggagccagtcagaa
tccagttctcatcctgccttgagccagtcaccaatgccacaggaaagaggttttatggca
ggcacacaaagaaaccctcagatgtctcaatatggacctcagcagacaggaccatccatg
tcgcctcatccttctcctggaggccagatgcaccctggaatcagtagctttcagcagagt
aactcaagtgggacttacggtccacagatgagccagtatggaccacaaggtaactactcc
agacccccaacatacagtggggtgcccagtgcaagctacagcggcccagggcccggcatg
ggcgtcaatgccaacagccagatgcatggacaagggccaagccagccatgtggctccatg
cccctgggacgagtgccatccgcaggcatgcagaacagaccatttcctggaaacatgagc
agcatgacccccagttctcctggcatgtctcagcagggggggccaggaatggggccacca
atgccaaccgtgaaccgtaaggcacaggaggcagctgccgcagtgatgcaggccgctgcg
aactcggcgcaaagcaggcaaggcggctttcccggcatgaatcagagtggactcatggct
tccagctcgccctacagccagcccatgaacaacagctctgggctgatgaacacccaggcg
cccccctacagcatgacgcccaatatggtgaacagctcaacagcatctatgggtcttgca
gatatgatgtctccgagtgaatccaagctgcccctgcctctcaaagccgatggtaaagaa
gaaggcagtgctcagccggagggcaagtcgaaggatagctacagctctcagggtatttct
cagcccccaacccccggcaacctgccagtcccttccccaatgtcccccagctctgctagc
atctcctcatttcatggagatgaaagtgatagcattagcagcccaggctggccaaagact
ccatcaagccctaagtccagctcatccaccaccactggggaaaagatcacaaaggtgtat
gagctagggaatgagccagagaggaagctgtgggtggaccgctacctcaccttcatggag
gagaggggctccccagtctcaagtctgcctgcggtgggcaagaagcccttggacctgttc
aggctctatgtctgcgtcaaagagatcggaggtttggcacaggttaataaaaacaagaag
tggcgtgagctggcaaccaacctaaatgttggcacttcgagcagtgcagcgagctccctg
aaaaagcagtatattcagtacctgtttgcctttgagtgcaagatcgagcggggggaggag
cccccgccggaagtcttcagcacgggcgacaccaagaagcagcccaagctccagccgcca
tctcctgctaactcaggatccttgcaaggtccacagaccccgcagtcaactggcagtaat
tcgatggcagaggttccaggcgacctgaagccacctactccagcctccacccctcatgga
caggtgaccccgatgcaaggtggaagaagcagcaccgtcagtgtgcacgacccattctca
gacgcaagtgagtcatcgttccccaaacgcaactccatgactcccagcaccccgtaccag
cagggcatgagcatgccagatgtgatgggcaggatgccctacgagcccaacaaggacccc
tttggagggatgcggaaagtgcctggaagcagcgagcctttcatgacgcaaggacagatg
cccaccagcagcatgcaggatatgtacaaccagagtccgtctggggccatgtctagtctg
ggcatggggccgcggcagcagtttccctacggagccagttacgaccgaaggcatgaacct
tacgggcagcagtacccaggccaaggccctccctcaggacagccgtcatacggaggacac
cagccgggcctgtacccacagcagacgaactacaagcgccatatggatggcatgtacggg
cctccagccaaacgccacgagggagacatgtacaacatgcagtatggcagccagcagcag
gagatgtacagccagtacgggagctcctactccggcccggaccggaggcccctgcaggga
cagtatccctacccctacaaccgagagagggtgcagggcccggggcagatacagccgcac
gccatcccgccgcagatgatgggcggcccgatgcagtcgtcctccagcgaagggcctcag
cagagcatgtgggcagcccgcaacgatatgccttacccctaccagaacaggcaaggcccg
ggcggccccgcgcaggccccgccttaccccggcatgaaccgcaccgatgacatgatggtc
cctgatcagaggataaaccacgagagccagtggccttcccacgtcagccagcgtcagcct
tacatgtcctcctcagcctccatgcagcccatcacgcgcccgcctcagtcgtcctaccag
acgccaccctcactgccaaaccacatctccagggcgcccagccccgcctccttccagcgc
tccctggagagccgcatgtctcccagcaagtcccccttcctcccctccatgaagatgcag
aaggtgatgcccaccgtccccacgtcccaggtcactgggccgcccccccaaccgcccccc
atcagaagggaaatcaccttccctcctggctctgtggaagcctcacagccagtcctgaaa
caaaggcggaagattacctcaaaagatattgttactccagaggcctggcgtgtgatgatg
tcccttaagtcaggtcttttggctgaaagtacgtgggctttggacactattaatattctt
ctatatgatgacagcactgttgctactttcaatctctcccagttgtccggatttcttgaa
cttttagtagagtatttcaggaaatgcctgattgacatttttggaattcttatggaatat
gaagtgggagaccccagccaaaaagcacttgatcacaatgcagcgaagagagacgacagc
cagtccttggctgacgattctgggagagaggaagaagatgctgaatgtattgaggaggag
gaggaagacgaggaggatgaggaggaggaagacagcgggagggcggagacggaggacagg
agcagcactggggcctcccctgacgccaccgcagatccaaaggagaagcccaggcaagcc
agtaaatttgacaagctgccaatcaagatagtcaaaaagaacaacctgtttgtcgtcgac
cgctctgacaagctgggtcgcgtccaggagttcagcagtggacttctgcactggcagctc
ggagggggggacaccaccgagcacatccagactcacttcgagagcaagatggagattcct
cctcgcaggcggccacctccccctttgagctccacaggcagaaagaaagaccaggaaggc
aaaggggattctgacgagcaccaagagaaaagcatcatcgcaaccatcgatgatgttctg
tctgcgcggccaggggctctgcctgaagacacaaaccctggtacccagaccgaaagcagc
aagtttcccttcggaatccatcaagccaaaagtcaccgcaacatcaagctgctggaggac
gagccgaggagccgggacgaggccccgctctgcaccatcgcgcactggcaggactcgctg
gccaagcgctgcatctgcgtgtccaatatcgtccggagcttgtcttttgtgcctgggaat
gatgcagaaatgtccaaacacccaggcctggtgctgatcctggggaagctgattcttctt
caccacgagcatcccgagagaaaacgagcgccgcagacctacgagaaggaggaagacgag
gacaaaggggtggcctgcagcaaagatgagtggtggtgggactgcctcgaggtcttaagg
gataacacgttggtcaccttggccaacatttctgggcagctagacttgtctgcttacacg
gaaagcatctgcttgccaattttggatggcttgctgcactggatggtgtgcccatcagcg
gaggcacaagacccctttcccacagtgggacccaactctgtcctgtcgcctcagagactc
gtgctggagacgctctgtaaactcagcatccaggacaacaatgtggacctgatcttggcc
acgcctccatttagtcgtcaggagaaattctatgccacgttagttaggtacgttggggat
cgcaaaaacccagtctgtcgagaaatgtccatggcgcttttatcgaaccttgcccaaggg
gacgcgctggctgcaagggccatagctgtgcagaagggaagcatcggaaacttgataagc
ttcctagaggatggggtcacgatggcccagtatcagcagagccagcacaacctcatgcac
atgcagcccccgcccctagagccccctagcgtggacatgatgtgcagggcagccaaggct
ctgctggccatggccagagtggacgagaaccgctccgagttccttctgcacgagggccga
ttgctggatatctcgatatcagccgttctgaactctctggtggcgtctgtcatctgcgat
gtactgtttcagatcgggcagttatga
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integrated database retrieval system
