Cervus canadensis (wapiti): 122434490
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Entry
122434490 CDS
T07554
Symbol
HDAC6
Name
(RefSeq) histone deacetylase 6 isoform X1
KO
K11407
histone deacetylase 6 [EC:
3.5.1.98
]
Organism
ccad
Cervus canadensis (wapiti)
Pathway
ccad04613
Neutrophil extracellular trap formation
ccad05014
Amyotrophic lateral sclerosis
ccad05034
Alcoholism
ccad05203
Viral carcinogenesis
Brite
KEGG Orthology (KO) [BR:
ccad00001
]
09150 Organismal Systems
09151 Immune system
04613 Neutrophil extracellular trap formation
122434490 (HDAC6)
09160 Human Diseases
09161 Cancer: overview
05203 Viral carcinogenesis
122434490 (HDAC6)
09164 Neurodegenerative disease
05014 Amyotrophic lateral sclerosis
122434490 (HDAC6)
09165 Substance dependence
05034 Alcoholism
122434490 (HDAC6)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
ccad01009
]
122434490 (HDAC6)
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccad03019
]
122434490 (HDAC6)
04131 Membrane trafficking [BR:
ccad04131
]
122434490 (HDAC6)
03036 Chromosome and associated proteins [BR:
ccad03036
]
122434490 (HDAC6)
Enzymes [BR:
ccad01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
122434490 (HDAC6)
Protein phosphatases and associated proteins [BR:
ccad01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
122434490 (HDAC6)
Messenger RNA biogenesis [BR:
ccad03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
122434490 (HDAC6)
Membrane trafficking [BR:
ccad04131
]
Autophagy
Aggrephagy
Other aggrephagy associated proteins
122434490 (HDAC6)
Chromosome and associated proteins [BR:
ccad03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class II HDACs
122434490 (HDAC6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
zf-UBP
zf-UBP_var
LysX_preATP_grasp
Motif
Other DBs
NCBI-GeneID:
122434490
NCBI-ProteinID:
XP_043313829
LinkDB
All DBs
Position
X:51300672..51319224
Genome browser
AA seq
1129 aa
AA seq
DB search
MTSTGQDSTTPKERRSRHNPHSPTHDSSITSKRGVKKGAILRSSPNLAEVKKKGRMKKLS
QTAEQDLIMGLQGLDLNLEARALSGTGLVFDEQLNEFHCLWDDSFPEGPERLHAIKEQLI
QEGLLDRCVSFQARFAEKEELMLVHSLEYIDLMETTQYMNEGELHVLADTYDSVYLHPNS
YTCACLASGSVLRLVDAVLGAEIRNGMAIVRPPGHHAQHSLMDGYCMFNHVAVAARYAQQ
KHDIQRVLIVDWDVHHGQGIQFAFDQDPSVLYFSIHRYEQGRFWPHLKASNWSTTGLGQG
QGYTINVPWNQVGMQDADYIAAFLHVLLPVAFEFQPQLVLVAAGFDALQGDPKGEMAATP
AGFAQLTHLLMGLAEGKLILSLEGGYNLRSLAEGVSASLHTLLGDPCPTLECPGAPCPSA
QVSLSCALEALEPFWESLVRSVETLEEKDTMEKDDVEEKEEEGLPQSPELSIPIWPVLQA
RTGLVYDQRMMDHYNLWDNYHPEMPQRIHCIMHHLDELGLAKRCHALPARPATDAELLTC
HSAEHLERLRATEKMKTRELRREGANYDSIYICSSTFSCAQLAAGAVCRLVEAVLAGEVL
NGIAVVRPPGHHAEPDAACGFCFFNSVAVAARHAQAISGHALRILIVDWDIHHGNGTQHI
FEEDPSVLYISLHRYDHGTFFPVGNEGASTRVGKAVGTGFTVNVAWNGPRMGDADYLAAW
HRLVLPIAYEFNPELVLVSAGFDAARGDPLGGCQVSPEGYAHLTHLLMGLANGHIILILE
GGYNLTSISESMAACTRSLLGDPLPLLTRLRPPLSGAQASITETIQVHRRYWRSLRVMKR
KNKEGLSSSKLITKKPSQPASSGSACMTTTVEGNILEAGMGQAASEASVKESTPDQTESE
TAPVELTQGQSSDTATQGAALDQTISEGATGGAELIQNPPASCIENRIPPALPVQGATVQ
TSPSKLTGNLRVLDLDSTTQEPPEEEGLLGEAAGGQDMNESVPVQVFGDHADTDQVMFYA
VRPLLWCPHLAAVCPIPETGLNVTQPCQDCGTLQENWVCLSCYQVYCGRYISAHMLQHHE
GSGHPLVLSYADLSAWCYHCQAYVHHKDLLAVKNIAHQNKFGEDIPHSD
NT seq
3390 nt
NT seq
+upstream
nt +downstream
nt
atgacctccaccggtcaggattccactacacccaaggagcgaaggagtaggcacaatccc
cactcccccacccacgactccagcatcacctcgaagcgaggtgttaaaaagggtgccata
ctccgctccagccccaatctagcggaggtaaagaagaaaggcagaatgaagaagcttagc
caaacagccgagcaagacctaatcatggggctgcaagggctggatctgaacttggaggcc
agggcactgtctggcactggcttggtgttcgatgaacagctaaatgaattccactgcctc
tgggatgacagcttcccggaaggcccagagcggctccatgccatcaaggagcaactgatc
caggagggcctcctggaccgctgcgtgtcctttcaggcccgattcgccgaaaaggaggag
ctgatgttggttcacagcctagaatacattgatctgatggaaacgacccagtacatgaac
gagggggaactccacgtcctagcagatacctatgactcagtttatctgcatccgaactca
tacacctgtgcctgcctggcctcaggctctgtcctcaggctggtggatgcagtcctgggg
gctgagatccggaatggcatggccatcgtcaggcctcctggacaccacgcccagcacagt
ctcatggatgggtattgcatgttcaaccacgtggccgtggctgcccgttacgcccaacag
aagcatgatattcagagggtccttatcgtggattgggatgtgcaccatggtcagggaata
cagttcgcctttgaccaagatcctagtgtcctctatttctccatccaccgctatgagcag
ggtcggttctggccccatcttaaggcctctaattggtccaccacaggtttaggccaaggc
cagggatacaccatcaacgtgccttggaaccaggtggggatgcaagatgctgactacatc
gccgctttccttcacgtcctcctgccagtcgcatttgagttccagccccagctggtcctg
gtagctgctggatttgatgccctccaaggggaccccaagggtgagatggccgccactcca
gcagggttcgcccagctcacccatctgctcatgggtcttgcagaaggcaagctgatcctc
tcactggagggtggctataatctccgctctctggctgaaggtgtcagcgcctccctccac
acccttctgggtgacccttgtcccacactggagtgtcctggtgccccctgcccgagtgcc
caggtgtcactctcctgtgctctagaagcccttgaacccttctgggagagccttgtgaga
tcagttgagaccctggaggaaaaggacactatggagaaggatgatgtggaagagaaggag
gaagagggactgccacagtcccctgagctctccattccaatatggccggtgctgcaggct
cgcacggggttggtctatgaccagcggatgatggaccactacaacttgtgggataactac
catcctgagatgccccagcgcatccactgtatcatgcatcacctggatgaactgggcctt
gccaagcgctgccatgccctgcctgcaagacccgctacagatgctgagctgctcacctgc
cacagtgctgagcacttggaacgtctgcgggccacggagaagatgaagacccgggagctg
cgccgtgagggtgccaactatgactccatctacatctgctccagcactttttcctgcgca
cagctggctgcaggcgccgtctgtcgcctggtggaggcagtactggccggagaggttttg
aatggcattgctgtagtgcgacctcctggccaccatgcagaaccggatgcagcttgtggt
ttctgtttttttaattctgtggctgtggctgctcgccatgcccaggccatcagtgggcat
gcgctgcggatcctgatcgtggactgggacatccatcatggtaatggaactcagcacata
tttgaggaggaccccagtgtgctatacatttccctgcaccgctatgatcatggtaccttc
tttcccgtggggaatgagggtgccagtacccgggtaggaaaagctgtgggcacaggattc
actgtcaatgtggcctggaatgggccccgcatgggtgatgctgactacctggctgcctgg
catcgtctggtgcttcccattgcttatgagtttaatccagaactggtgctggtctcagct
ggcttcgacgctgcccggggggatcctctgggcggctgccaggtgtcgcctgagggctat
gcccacctcacccacctgctgatgggcttggccaatggccatatcatcctaatcctagag
ggtggttataacctgacgtccatctcagagtccatggctgcctgcactcgctccctcctt
ggggatccactgcccctgctgacccggctgcggcccccactatcaggagcccaggcgtct
attactgaaaccatccaagtccatcgaagatactggcgcagtttgcgggtcatgaagcgc
aaaaacaaagagggactctccagttctaagttgatcaccaagaagccatcccaaccagcc
agttctgggtcagcctgtatgacaaccacagtggaagggaacatcctggaggcaggcatg
ggacaggccgcctcagaagcatctgtgaaagagtccactccagatcagaccgagtcagag
acagctccagtagaacttactcagggccagtcttcagacacagccacacaaggagctgca
ctggaccagaccatctcagagggggccacggggggagctgagctgatccaaaatcctcca
gcctcatgcattgaaaacaggattcctccagccttacctgtgcaaggagccacagtccag
acatcccctagtaagctgacggggaatctcagagtattggacctagatagcacgactcag
gagcccccagaagaggaaggactcctaggagaggcagctggaggtcaagacatgaatgag
tcagtgccagtgcaggtctttggagatcatgctgacactgaccaggtcatgttttatgca
gtgagaccactgctttggtgtccccatttggcagcagtatgccccatacctgagacaggg
ctgaacgtgacccaaccttgtcaggactgtggaacactccaggagaactgggtgtgtctg
tcttgctatcaggtctactgcggtcgttacatcagtgctcatatgctccaacaccatgaa
ggctcaggacacccactagtactcagctatgccgacctgtctgcctggtgttaccactgt
caggcctatgtccaccacaaggatctcctagcggtgaagaacatcgcccaccagaacaag
tttggggaagacataccccactcagactaa
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