Cervus canadensis (wapiti): 122434534
Help
Entry
122434534 CDS
T07554
Symbol
HCFC1
Name
(RefSeq) host cell factor 1 isoform X1
KO
K14966
host cell factor 1
Organism
ccad
Cervus canadensis (wapiti)
Pathway
ccad03083
Polycomb repressive complex
ccad04980
Cobalamin transport and metabolism
ccad05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
ccad00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
122434534 (HCFC1)
09150 Organismal Systems
09154 Digestive system
04980 Cobalamin transport and metabolism
122434534 (HCFC1)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
122434534 (HCFC1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
ccad01009
]
122434534 (HCFC1)
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ccad03036
]
122434534 (HCFC1)
03029 Mitochondrial biogenesis [BR:
ccad03029
]
122434534 (HCFC1)
Protein phosphatases and associated proteins [BR:
ccad01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
122434534 (HCFC1)
Chromosome and associated proteins [BR:
ccad03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
NSL complex
122434534 (HCFC1)
HMT complexes
COMPASS/SET1 complex
122434534 (HCFC1)
MLL-HCF complex
122434534 (HCFC1)
Polycomb repressive complex (PRC) and associated proteins
PR-DUB complex
122434534 (HCFC1)
Mitochondrial biogenesis [BR:
ccad03029
]
Mitochondrial quality control factors
Regulator of mitochondrial biogenesis
Other regulator of mitochondrial biogenesis
122434534 (HCFC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Kelch_5
Kelch_3
Kelch_4
Kelch_1
Kelch_6
Kelch_2
fn3
Motif
Other DBs
NCBI-GeneID:
122434534
NCBI-ProteinID:
XP_043313925
LinkDB
All DBs
Position
X:complement(142744501..142767929)
Genome browser
AA seq
2049 aa
AA seq
DB search
MASAVSAANSPAVLLQPRWKRVVGWSGPVPRPRHGHRAVAIKELIVVFGGGNEGIVDELH
VYNTATNQWFIPAVRGDIPPGCAAYGFVCDGTRLLVFGGMVEYGKYSNDLYELQASRWEW
KRLKAKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNIPRYLNDLYILELRP
GSGVVAWDIPITYGVLPPPRESHTAVVYTEKDNKKSKLVIYGGMSGCRLGDLWTLDIETL
TWNKPSLSGVAPLPRSLHSATTIGNKMYVFGGWVPLVMDDVKVATHEKEWKCTNTLACLN
LDTMAWETILMDTLEDNIPRARAGHCAVAINTRLYIWSGRDGYRKAWNNQVCCKDLWYLE
TEKPPPPARVQLVRANTNSLEVSWGAVATADSYLLQLQKYDIPATAATATSPTPNPVPSV
PANPPKSPAPAAAAPAVQPLTQVGITLLPQAAAAPPTTTTIQVLPTVPGSSISVPAAART
QGVPAVLKVTGPQATTGTPLVTMRPASQAGKAPVTVTSLPAGVRMVVPTQSAQGTVIGSS
PQMSGMAALAAAAAATQKIPPSSAPTVLSVPAGTTIVKTVAVTPGTTTLPATVKVASSPV
MVSNPATRMLKTAAAQVGTSVSSAANTSTRPIITVHKSGTVTVAQQAQVVTTVVGGVTKT
ITLVKSPISVPGGSALISNLGKVMSVVQTKPVQTSAVTGQASTGPVTQIIQTKGPLPAGT
ILKLVTSADGKPTTIITTTQASGAGTKPTILGISSVSPSTTKPGTTTIIKTIPMSAIITQ
AGATGRGLPRCAGEKAGVTSSAGIKSPITIITTKVMTSGTGAPAKIITAVPKIATGHGQQ
GVTQVVLKGAPGQPGTILRTVPMGGVRLVTPVTVSAVKPAVTTLVVKGTTGVTTLGTVTG
TVSTSLAGAGGHSTSASLATPITTLGTIATLSSQVINPTAITVSAAQTTLTAAAGLTTPT
ITMQPVSQPTQVTLITAPSGVEAQPVHDLPVSILASPTTEQPTATVTIADSGQGDVQPGT
VTLVCSNPPCETHETGTTNTATTTVVANLGGHPQPTQVQFVCDRQEATAALVTSTVGQPN
GSVVRVCSNPPCETHETGTTSTATTAMSGIGGGPRRDIRLACAATTIPTVVRVSVAAGAS
EGAQVSIKPACQTRQTSATSTTMTVMATGAPCSAGPLLRPSVALEAAGRGATLLQLGPLS
AQVRPSGEEGSLASLGPLVSVGRQLEVHHTHTTNTATVARSAMGAGEPHELLGAPTLVYE
SSASASVTAAALEALLCPSATVTQVCSNPPCETHETGTTHTPTTATSGGAAGQPEGGQQP
PTSRPCETHQTASTGTTMSVSLGALLPDATPSHRTLESSLEVAVPPAVAPQPGASLLTPF
PTQRVCSNPPCETHETGTTHTATTVTSNMSSNQDPPPPAGDQGEVESTQGDSVNIASSSP
ITTTVSSTLTRAVTTVTQSTPVPGPSVPKISSVTETAPGALTTEVPIPATITVTIANTET
SDMPFSAVDILQPPEELQASPGPRQQLPPRQLLQPASAPLVGDSAEVLSASQSPELQAAV
DLSSTGDPSSGQEPASSAVVATVVVQPPPPTQSEVDQLSLPQELMAEAQAGTTTLMVTGL
TPEELAVTAAAEAAAQAAATEEAQALAIQAVLQAAQQAVMAGTGEPMDTSEAAAAVTQAE
LSHLSAEGQEGQATTIPIVLTQQELAALVQQQQLQEAQAQQQQHHLPTEALAPADSLNDP
TIESNCLNELAGAVPSTVGLLPPTATESLAPSNTFVAPQPVVVASPAKLQAAATLTEVAN
GIESLGVKPDLPPPPSKAPVKKENQWFDVGVIKGTNVMVTHYFLPPEDAVPTDDDSGTVP
DYNQLKKQELQPGTAYKFRVAGINACGRGPFSEISAFKTCLPGFPGAPCAIKISKSPDGA
HLTWEPPSVTSGKIIEYSVYLAIQSAQAGGETKSSTPAQLAFMRVYCGPSPSCLVQSSSL
SNAHIDYTTKPAIIFRIAARNEKGYGPATQVRWLQETSKDSSGAKPASKRPMSSPEMKSA
PKKSKADGQ
NT seq
6150 nt
NT seq
+upstream
nt +downstream
nt
atggcttcggccgtgtcagccgccaactcgccagcggtgctcttgcagccccgctggaag
cgagtggtgggctggtcgggtccagtgccccggccccgccacggccaccgcgccgtggcc
atcaaggagctcatcgtggtgtttggcggcggcaacgaggggatagtggacgagctgcac
gtgtacaacacggcgaccaaccagtggttcatcccggctgtgagaggggacatccctcct
ggatgtgcagcctatggcttcgtgtgcgatgggacacgcctgcttgtgttcggagggatg
gtggaatatgggaagtacagcaacgacctctacgagctccaggcaagccggtgggaatgg
aagagactgaaagcaaagacgcccaaaaatgggcctcctccgtgtcctcgacttgggcac
agtttctcccttgtgggcaacaaatgttacctgtttgggggtctggccaatgatagtgag
gaccccaagaacaacattccgaggtacctgaatgacttatacatcctggaactgcggccg
ggctctggagtggtagcctgggacattcccatcacttatggtgtcctgcccccaccccga
gagtctcacactgcagtggtttacaccgagaaagacaacaagaagtccaagctggtgatc
tatggagggatgagtggctgcaggctgggggacctctggaccctggatatcgagactttg
acgtggaataagcccagcctcagcggggtggcacctcttcctcgaagtctccactcggcc
acgaccataggaaacaaaatgtacgtgtttggtggctgggtgcccctcgtcatggatgac
gtcaaagtggccacacacgagaaggagtggaagtgtaccaacaccctggcttgtctcaac
ctggataccatggcttgggagaccatcctgatggatacgctggaagacaatattccccgg
gcccgtgctggccactgcgcagtagccatcaatacccgcctttacatttggagtgggcgt
gacggctaccgaaaggcctggaacaaccaggtctgctgcaaggacctttggtacctggaa
acagaaaagccaccacctccagcccgggtacagctggtgcgagccaacactaactccctg
gaggtgagctggggggccgtggcgacagccgacagttaccttctgcagctccagaaatat
gacattcctgccacggctgccactgccacctcccccacacccaatccagtcccgtctgtg
cctgccaaccctcccaagagccctgccccagcagcagccgcacctgccgtgcagccgctg
acccaagtaggcatcacgctcctgccccaggctgctgccgcgcccccgaccaccaccacc
atccaggtcttgccgacggtgcctggcagctcaatctccgtgcccgccgcagccaggact
caaggtgtcccggctgtgctgaaagtgactggtcctcaggctaccacgggaaccccgtta
gtcaccatgcgacctgccagccaggctgggaaagcccccgtgaccgtgacctcccttccc
gcaggcgtgcggatggttgtgcctacacagagcgcccaggggacggtcattggcagcagc
ccacagatgagtggtatggctgcgttggcagccgcggctgctgccactcagaaaatccct
ccttcctcggcacccacggtcctgagtgtcccggctggcaccaccatcgtcaaaaccgtg
gccgtaacgccgggcaccaccacgctcccagccactgtgaaggtggcctcctcaccagtc
atggtgagcaacccagctactcgcatgctgaagactgcagctgcccaggtggggacctct
gtctcttctgccgccaacacgtctactcgtcccatcatcactgtacacaagtctgggact
gtgacagtggcccagcaagcccaggtggtgaccacagtggtgggtggggtcaccaagacc
atcaccctggtgaagagccccatttcggtcccaggaggcagtgctctgatttccaatctg
ggcaaagtgatgtcagtggtccagaccaaaccggttcagacttcggcagtcacaggccag
gcgtctacaggcccagtgactcagatcatccagactaaaggacccctgccagccgggacc
atcctgaagctggtgacgtctgcagatggcaagcctactaccatcatcacaaccacgcag
gccagcggggcagggactaagcctaccatcctgggcatcagcagtgtgtcccccagcacc
accaaacccggcaccacgactatcattaagaccatccccatgtcggctatcatcacacag
gcgggcgccacgggtaggggccttccccggtgtgctggggagaaagcaggcgtgactagc
agtgccggcatcaagtcgcccatcaccattatcaccaccaaggtgatgacttctggaact
ggagcccccgccaaaatcatcacagccgttcccaaaatcgctacgggccacgggcagcaa
ggagtgacccaggtggtgctgaagggcgcacctggccagccaggcaccatcctccgcact
gtgcctatggggggcgtccgcctggtcactcccgttactgtctctgctgtcaagccggct
gtcaccacactggttgtcaagggcaccacaggcgtcacgaccctgggcacagtgacaggc
accgtctccaccagcctggccggagctgggggccatagcaccagcgcctcgctggccacg
cccatcaccacgttgggcaccatcgccaccctctcaagccaggtgatcaaccccactgcc
atcaccgtgtcagcagcacagacaacgctgacagcggccgctgggctcaccacgcccacc
atcaccatgcagcctgtctcccagcctacccaggtgactctgatcacagccccaagtgga
gtggaggcccagcctgtgcacgacctcccagtgtccattctggcctctcctactacggaa
cagcccacggccacggtcaccatcgctgattcgggccagggtgatgtgcagcccggcact
gtgaccctggtgtgctccaacccgccgtgtgagacccacgagacgggcaccaccaacaca
gccaccaccactgtcgtcgctaatctgggggggcacccccagcccacccaagtgcagttc
gtctgcgacagacaggaggccactgctgctcttgtgacctccacggtgggccagccgaat
ggcagcgtcgttcgtgtctgctccaacccgccatgcgagacccacgagaccggcaccacc
agcacagccaccaccgccatgtccggcatcggaggcgggccacggcgagacatccggctc
gcctgcgcggccaccaccattcccactgtagtccgggtcagcgtggctgctggggcgtca
gagggagcccaggtttccatcaagcccgcatgccaaacccgtcagacgagcgcaaccagc
accaccatgactgtgatggccaccggggccccgtgctcagccggcccgctcctcagacca
agcgtggcccttgaggccgctggccgtggtgccactctcttacagctggggcccctgagt
gcccaggtcaggcccagtggcgaggaagggtccctcgccagcctgggcccactggtgtcc
gtggggcgccagctggaggtgcatcacacgcacacgaccaatacggccactgtggcccgc
tctgccatgggtgccggggagccccacgagctgctgggggcccccacactggtgtatgaa
agctcagccagcgcctctgtgactgccgcggctctggaggcactgctgtgcccctcagcc
accgtgacccaggtctgctccaaccccccgtgtgagacccacgagacgggtaccacccac
acacccaccacggccacgtccggaggggctgcaggccagccagagggtgggcagcagcct
cccaccagccggccctgtgagacgcaccagaccgcttccactggcacgaccatgtccgtc
agcttgggcgccctgctcccagatgccaccccctcccacaggaccctggagtccagcctg
gaggtggcggtgccgcccgcagtcgccccccagcccggcgcttcattgctcactcctttc
ccgacgcaaagggtgtgctccaacccgccctgtgagacgcacgagacaggcaccacacac
acggccaccactgtcacctccaacatgagttccaatcaagaccccccaccacctgccggc
gaccagggagaggtggagagtacccagggtgacagtgtgaatatcgccagttccagtccc
atcacgacaacagtgtcctccacgctgacacgggctgtgaccaccgtgacacagtccacg
ccagtcccaggcccttcggtgccgaagatctcatctgtgactgagactgccccaggggct
ctgaccaccgaagtccccatcccggccacgattacagtgaccatagccaacacagaaact
tctgacatgcccttctctgctgttgacatcctgcagcccccagaggagctccaggcctcg
ccagggccgcgccagcagcttccgccacggcagctcctgcagcctgcctccgcgcccctg
gtgggggactccgccgaggtcctgtcagcctcccagagccctgagctccaggccgccgtg
gatctgagcagtacaggggacccgtcttcaggccaggagcctgccagctcggctgtggtg
gccactgtggtggtccagccaccgccacccacccagtctgaagtagaccagttgtccctc
ccccaagagctgatggctgaggcccaggcgggcaccaccaccctcatggtgacagggctc
accccagaggagctggcagtgactgctgctgctgaagcggctgcacaggccgcagccaca
gaggaggcccaggccctggccatccaggccgtgctccaggccgcacagcaggctgtcatg
gcaggcactggggagccgatggatacttcagaggcggccgcggcagtgacgcaggcagag
ctgagccacctgtcagccgagggccaggaaggccaggcaaccaccatccccatcgtgctg
acacaacaggagctggccgccctggtgcagcagcaacagctccaggaggcgcaggcccag
cagcagcagcaccacctgcccacagaagcgctggcccctgccgacagcctcaatgaccca
accatcgagagcaactgcctcaatgagctggccggagctgtgcccagcaccgtgggcctg
ctgccccccacggccaccgagagcctggccccgtccaacacattcgtggccccccagccg
gtcgttgtggccagccctgcaaagctgcaggccgcggccaccctgacggaagtggccaat
ggcattgaatccctgggcgtgaagccagacctgccaccgccacctagcaaagcccctgta
aagaaggagaaccagtggtttgacgtgggggtcattaagggtaccaatgtgatggtgaca
cactatttcctgccacccgaagatgctgtcccaactgatgatgactcgggcaccgtgccc
gactacaaccagctaaagaagcaggagctgcagccaggcaccgcatataagttccgcgtc
gccgggatcaatgcctgcggccgggggcccttcagtgagatctcagcctttaaaacatgt
ctgcctggcttcccgggggccccgtgtgccattaaaatcagcaaaagtccagacggtgct
cacctcacttgggagccgccctctgtgacctccggcaagatcatcgagtactcagtgtac
ctggccatccagagcgcgcaggctggcggcgagaccaagagctcgaccccggcgcagctg
gccttcatgcgggtgtactgtgggcccagcccctcctgcctcgtgcagtcctccagcctc
tccaacgcccacattgactacaccaccaagcccgccatcatcttccgcattgccgcccgc
aatgagaagggctatggcccagccacccaagtcaggtggttgcaagaaaccagtaaagac
agctctggcgccaagccggccagcaagcggcccatgtcgtctccggaaatgaaatccgcg
ccaaagaaatcgaaggcagacggtcagtga
DBGET
integrated database retrieval system