Cervus canadensis (wapiti): 122435403
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Entry
122435403 CDS
T07554
Name
(RefSeq) TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
ccad
Cervus canadensis (wapiti)
Pathway
ccad03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
ccad00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
122435403
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccad03021
]
122435403
03036 Chromosome and associated proteins [BR:
ccad03036
]
122435403
Transcription machinery [BR:
ccad03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
122435403
Coactivators
SAGA/TFTC/STAGA complex
122435403
Chromosome and associated proteins [BR:
ccad03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
122435403
STAGA complex
122435403
TFTC complex
122435403
SAGA complex
122435403
SLIK complex
122435403
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_CDC20-Fz
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_CAF1B_HIR1
Beta-prop_EML_2
TFIID_NTD2
Beta-prop_TEP1_2nd
EIF3I
WDR55
WD40_MABP1-WDR62_2nd
Beta-prop_EML
Beta-prop_WDR75_1st
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_1st
Beta-prop_TEP1_C
ANAPC4_WD40
Beta-prop_RIG_2nd
Beta-prop_IFT122_1st
Beta-prop_IFT140_1st
WDR90_beta-prop_4th
Beta-prop_SCAP
Beta-prop_EIPR1
NBCH_WD40
Beta-prop_SPT8
WD40_RFWD3
Beta-prop_HPS5
RMC1_N
Beta-prop_DCAF4
Beta-prop_WDR19_1st
Beta-prop_Vps41
PEP5_VPS11_N
eIF2A
Beta-prop_WDR75_2nd
Ge1_WD40
WDR54
Beta-prop_DCAF12
Beta-prop_IFT122_2nd
Motif
Other DBs
NCBI-GeneID:
122435403
NCBI-ProteinID:
XP_043315484
LinkDB
All DBs
Position
X:complement(19418232..19421120)
Genome browser
AA seq
597 aa
AA seq
DB search
MEPFRTDQMQMSVSGYLKRRQYWGSDGPPKKIRRLSQNMQDMATSLAVQSESGCANTVSA
APGQADPQQYEVQFRRLRDFLMDSDSQHSHEVTPLLYPLFVYLHLDLVQNGPKTTAESFY
SRFHEMFLQNASQKDVIEQLQTTQTSQDIMSNFQLRAFLDSKYVVRLSEDSYNYLLHYLQ
SDNNTALCRVLTWHIHLDVQPAERMDSQLYASGDPSSGDPSSAGSSSGQGGGLESTDLPK
YILQKEEELEILQETIKCVQDGPPSLITIYSYAFYNTVQLLNTAEASPDSKLLAAGFDNS
CIKLWSLTSKKFKPNPHQVDASRIDLAYDIPEDDDEDKAAKELKVLQGHHGPVYGTRFLP
DSSALLSCSEDTSIRYWDLESFTNTVLYQGHTYPVWDLDISPHNLFFASASRDRTAKLWS
FDRTYPLRIYAGHLADVDCVKFHPNSNYLATGSTDKTVRLWSAQQGNSLRLFTGHHGPVR
CLAFSPNGKYLVSAGEDQLLKLWDLASGTLYKELQGHTDDITSVTFNPDSSLIASASMDN
SVRIWDINSKHSSTPADGSSSELLGVYTSQMSTVLNVQFMTCNLLLVTGITEEKQEH
NT seq
1794 nt
NT seq
+upstream
nt +downstream
nt
atggaaccgttccgcaccgaccagatgcagatgtccgtgtccggctacctcaaacgccgg
cagtactggggcagcgatggcccaccgaagaaaatccggcgactgtcacagaacatgcaa
gatatggctaccagcctcgcagtccagtcagaatctggttgtgccaacacagtgtctgca
gcccctggccaggcagacccccagcaatatgaagtacagttcagacggctgcgggatttt
ctcatggactctgactcccagcatagccacgaagtgacgcctctcctctaccctctcttt
gtctacctccatcttgacctggtccagaacggtccaaagaccacagcggaaagcttttac
agccgcttccatgaaatgtttctccagaacgccagccagaaggacgtcatcgagcagctc
cagaccacccagaccagccaagacatcatgtctaacttccagctgcgggccttcctggac
agtaagtacgtggttcgtctgtcagaagacagctacaactaccttctccactacctccag
agtgacaacaacaccgcgctttgcagagtcctcacctggcacatccacctggacgtgcag
cctgccgagaggatggactcccagctctacgccagcggcgacccctccagcggcgacccc
tccagcgccggctcctccagcggccagggtggcggcctggagtccaccgacctgcccaag
tacatcctgcagaaggaggaggagctggagatccttcaggagaccatcaagtgcgtccag
gatggccccccctccctcatcaccatctactcctacgccttctacaacactgtgcagctg
ctgaatacggcagaggcctccccggacagcaagctgctcgccgcgggctttgacaactcc
tgtataaaactgtggagtctgacttccaagaagtttaaacccaacccccatcaagtagac
gcgtcccgcatcgacttggcttatgatatccccgaggacgacgatgaggacaaggcagcc
aaggagctgaaggtcctgcagggacaccacggcccggtgtacggcaccaggttcctcccg
gacagctccgcgctgctctcctgctctgaagacacgtccatcaggtactgggacctggag
agcttcacgaacactgtgctgtaccagggccacacctacccagtgtgggacctggacatc
agcccgcacaacctgttctttgccagtgcatcccgtgaccgcaccgcgaagctgtggtca
tttgatcggacgtacccactgcgaatctacgccgggcacctggcggatgtggactgtgtt
aagttccaccccaattcaaactatttagccacgggctcgacagacaagacggtgcggctg
tggagtgcccagcaggggaactcgctgagactcttcacaggccaccacggccccgtgcgc
tgcttggccttttcccccaacggtaagtacttggtgtcggcgggcgaggaccagctgctg
aagctgtgggacctggcatctgggaccctttacaaagagctacagggccacacggatgac
atcaccagcgtcaccttcaacccggacagcagcctgatcgcctcagcatccatggataac
tcagtgcggatctgggacatcaacagcaagcacagcagcacgcccgccgatggctcgtcc
agtgagctcctgggcgtctacaccagccagatgagcactgtgctgaatgtgcagttcatg
acctgcaacctcctgctggtgaccggaatcacagaagaaaagcaggaacactga
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integrated database retrieval system
