Cervus canadensis (wapiti): 122437274
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Entry
122437274 CDS
T07554
Symbol
ATG16L1
Name
(RefSeq) autophagy-related protein 16-1 isoform X1
KO
K17890
autophagy-related protein 16-1
Organism
ccad
Cervus canadensis (wapiti)
Pathway
ccad04136
Autophagy - other
ccad04140
Autophagy - animal
ccad04621
NOD-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
ccad00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
122437274 (ATG16L1)
04136 Autophagy - other
122437274 (ATG16L1)
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
122437274 (ATG16L1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ccad04131
]
122437274 (ATG16L1)
03029 Mitochondrial biogenesis [BR:
ccad03029
]
122437274 (ATG16L1)
Membrane trafficking [BR:
ccad04131
]
Autophagy
Autophagosome formation proteins
Atg12 conjugation proteins
122437274 (ATG16L1)
Others
Specific organelles associated proteins
Auto phagosome
122437274 (ATG16L1)
Mitochondrial biogenesis [BR:
ccad03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
122437274 (ATG16L1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATG16
WD40
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
WDR55
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_EML
WD40_MABP1-WDR62_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_WDR75_1st
Beta-prop_TEP1_C
Beta-prop_WDR90_POC16_2nd
Beta-prop_SCAP
WD40_MABP1-WDR62_1st
Beta-prop_DCAF4
Beta-prop_EIPR1
Beta-prop_RIG_2nd
WD40_RFWD3
eIF2A
WDR90_beta-prop_4th
ANAPC4_WD40
Beta-prop_IFT140_1st
Beta-prop_IFT122_1st
Beta-prop_WDR19_1st
CCDC93_CC
DUF2332
Vma22_CCDC115
HTH_6
APEH_N
PALB2_WD40
Fez1
Phage_GPO
Motif
Other DBs
NCBI-GeneID:
122437274
NCBI-ProteinID:
XP_043317952
LinkDB
All DBs
Position
2:107525102..107568073
Genome browser
AA seq
623 aa
AA seq
DB search
MSSGLRTAVFPRWKRHISEELRRRDRLQRQAFEEIILQYNKLLEKSDLHSVLAHKLQAEK
HDVPNRHEISPGHDGSWNDSQLQEMAQLRIKHQEELTELHKKRGELAQLVIDLNNQMQQK
DKEMQMNEAKIAEYLQTISDLEAECQELRTKLQDLERANQTLKDEYDALQITFTALEEKL
RKTSEENQELVTRWMAEKAQEANRLNAENEKDSRRRQARLQKELAEAAKEPLPVEQDDDI
EVLMDETSEHPEETSPVRAISRAATKRLSQPAGGLLDSITNIFGLSESPLLGHHSSDAAR
RRSVSSFPVPQDNVDPHPGASKEVRVPTTAVSVFDAHDGEVNAVQFSPGSRLLATGGMDR
RVKLWEVFGDRCELRGSLSGSNAGVTSIEFDSAGSYLLAASNDFASRIWTVDDYRLRHTL
TGHSGKVLSAKFLLDNARIVSGSHDRTLKLWDLRSKVCIKTVFAGSSCNDIVCTEQCVMS
GHFDKKIRFWDIRSESIVREMELLGKITALDLNPERTELLSCSRDDLLKIIDLRINAVRQ
TFSAPGFKCGSDWTRAVFSPDGSYVAAGAAEGSLYIWNVLSGKVEKVLSKYHSSSINAVA
WSPAGSHVVTVDKGSKAVLWSEY
NT seq
1872 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtcgggcctccgcaccgccgtcttcccgcgttggaagcgccacatctcagaggag
ctgagacgccgggaccggctgcagaggcaagcgttcgaggagattatcctgcaatataac
aagttgctggaaaagtcagatcttcattcagtgctggcccataagctacaagccgaaaag
catgacgtaccaaacagacatgagataagtcctggacatgatggttcatggaatgatagt
cagctgcaagaaatggcccagctgagaattaaacaccaagaagaactgactgaattgcac
aagaaacgtggggagttagcccagttggtgattgacctgaataaccaaatgcagcagaag
gacaaggaaatgcagatgaacgaagccaaaattgcagaatacctgcagaccatctctgac
ttggaggccgagtgccaggagctgcgcactaagcttcaggaccttgaaagagccaaccag
accctgaaggatgagtacgacgccctgcagatcaccttcaccgccctagaggagaagctg
cggaagacttccgaggagaaccaggagctggtcacgcggtggatggccgagaaagcccag
gaggccaaccgcctaaacgcggagaatgaaaaggactcaaggaggcggcaagcccggctg
cagaaggagctcgcagaagcagcgaaggagccgctgcccgttgagcaggatgatgacatt
gaagtcctcatggatgaaacctctgagcaccctgaggagacctctcccgtgcgagccatc
agcagagcggccactaagcgactctcgcagcctgctggaggccttctggattctatcact
aatatctttggtctgtccgagtctccccttttgggacatcactcttccgatgctgccagg
aggcgctctgtctcttcctttccagttccccaggataacgtggatcctcatcccggtgct
agtaaagaagtgagggtgccgacgactgcagtgtctgtctttgacgcgcacgacggggag
gtcaatgccgtgcagttcagcccgggctcccggctcctggccacgggaggcatggatcgc
agggtgaagctctgggaagtgtttggagacagatgtgagctcaggggctccctgtccggc
agtaatgcaggcgttacaagcattgaatttgatagtgctggatcttacctcttagcagcc
tcaaatgattttgcaagccgcatctggaccgtggatgactaccggttacggcacacgctc
acgggacacagtggcaaagtgctgtctgccaagttcctgctggacaacgcacgtatcgtt
tctggaagtcacgaccggaccctcaaactctgggatctacgcagcaaagtctgcataaag
acggtatttgcgggatccagctgcaatgacattgtctgcacagagcagtgtgtgatgagt
gggcattttgacaagaagattcgtttctgggacatccgatcagagagtatcgtccgagag
atggagctcttgggaaagatcactgccctggacttaaacccagagagaactgaactcctc
agctgctctcgagatgacctgctgaaaattattgacctacgaataaatgctgtcaggcag
acattcagtgcgccaggcttcaagtgtggctccgactggacgagagctgtgttcagccct
gacggcagttacgtggcagcgggtgcagccgagggctcgctgtacatctggaacgtgctg
tccgggaaagtggagaaggtcctctcaaagtatcacagctcgtccatcaacgcggtggcc
tggtcccccgccggctcccacgtggtcactgtggacaaaggaagtaaggccgtgctgtgg
tcggagtactga
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