Cervus canadensis (wapiti): 122438102
Help
Entry
122438102 CDS
T07554
Symbol
COL1A2
Name
(RefSeq) collagen alpha-2(I) chain isoform X1
KO
K06236
collagen type I alpha
Organism
ccad
Cervus canadensis (wapiti)
Pathway
ccad04151
PI3K-Akt signaling pathway
ccad04510
Focal adhesion
ccad04512
ECM-receptor interaction
ccad04611
Platelet activation
ccad04820
Cytoskeleton in muscle cells
ccad04926
Relaxin signaling pathway
ccad04933
AGE-RAGE signaling pathway in diabetic complications
ccad04974
Protein digestion and absorption
ccad05146
Amoebiasis
ccad05165
Human papillomavirus infection
ccad05205
Proteoglycans in cancer
ccad05415
Diabetic cardiomyopathy
Brite
KEGG Orthology (KO) [BR:
ccad00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
122438102 (COL1A2)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
122438102 (COL1A2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
122438102 (COL1A2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
122438102 (COL1A2)
09150 Organismal Systems
09151 Immune system
04611 Platelet activation
122438102 (COL1A2)
09152 Endocrine system
04926 Relaxin signaling pathway
122438102 (COL1A2)
09154 Digestive system
04974 Protein digestion and absorption
122438102 (COL1A2)
09160 Human Diseases
09161 Cancer: overview
05205 Proteoglycans in cancer
122438102 (COL1A2)
09172 Infectious disease: viral
05165 Human papillomavirus infection
122438102 (COL1A2)
09174 Infectious disease: parasitic
05146 Amoebiasis
122438102 (COL1A2)
09166 Cardiovascular disease
05415 Diabetic cardiomyopathy
122438102 (COL1A2)
09167 Endocrine and metabolic disease
04933 AGE-RAGE signaling pathway in diabetic complications
122438102 (COL1A2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
ccad00536
]
122438102 (COL1A2)
Glycosaminoglycan binding proteins [BR:
ccad00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
122438102 (COL1A2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Motif
Other DBs
NCBI-GeneID:
122438102
NCBI-ProteinID:
XP_043318553
LinkDB
All DBs
Position
3:10649320..10686048
Genome browser
AA seq
1364 aa
AA seq
DB search
MLSFVDTRTLLLLAVTSCLATCQSLQEATARKGPSGDRGPRGERGPPGPPGRDGDDGIPG
PPGPPGPPGPPGLGGNFAAQFDGKGGGPGPMGLMGPRGPPGASGAPGPQGFQGPPGEPGE
PGQTGPAGARGPPGPPGKAGEDGHPGKPGRPGERGVVGPQGARGFPGTPGLPGFKGIRGH
NGLDGLKGQPGAPGVKGEPGAPGENGTPGQTGARGLPGERGRVGAPGPAGARGSDGSVGP
VGPAGPIGSAGPPGFPGAPGPKGELGPVGNPGPAGPAGPRGEVGLPGLSGPVGPPGNPGA
NGLPGAKGAAGLPGVAGAPGLPGPRGIPGPVGAAGATGARGLVGEPGPAGSKGESGNKGE
PGAVGQPGPPGPSGEEGKRGSTGEIGPAGPPGPPGLRGNPGSRGLPGADGRAGVMGPAGS
RGATGPAGVRGPNGDSGRPGEPGLMGPRGFPGSPGNIGPAGKEGPVGLPGIDGRPGPIGP
AGARGEPGNIGFPGPKGPTGDPGKAGEKGHAGLAGARGAPGPDGNNGAQGPPGPQGVQGG
KGEQGPAGPPGFQGLPGPAGTAGEAGKPGERGIPGEFGLPGPAGARGERGPPGESGAAGP
AGPIGSRGPSGPPGPDGNKGEPGVVGAPGTAGPSGPSGLPGERGAAGIPGGKGEKGETGL
RGDVGSPGRDGARGAPGAVGAPGPAGANGDRGEAGPAGPAGPAGPRGSPGERGEVGPAGP
NGFAGPAGAAGQAGAKGERGTKGPKGENGPVGPTGPVGAAGPSGPNGPPGPAGSRGDGGP
PGATGFPGAAGRTGPPGPSGISGPPGPPGPAGKEGLRGPRGDQGPVGRSGETGASGPPGF
AGEKGPSGEPGTAGPPGTPGPQGLLGAPGFLGLPGSRGERGLPGVAGSVGEPGPLGIAGP
PGARGPPGNVGNPGVNGAPGEAGRDGNPGNDGPPGRDGQPGHKGERGYPGNAGPVGTAGA
PGPQGPVGPTGKHGNRGEPGPAGAVGPAGAVGPRGPSGPQGIRGDKGEPGDKGPRGLPGL
KGHNGLQGLPGLAGHHGDQGAPGAVGPAGPRGPAGPSGPAGKDGRTGQPGAVGPAGIRGS
QGSQGPAGPPGPPGPPGPPGPSGGGYDFGFDGDFYRADQPRSPTSLRPKDYEVDATLKSL
NNQIETLLTPEGSRKNPARTCRDLRLSHPEWSSGYYWIDPNQGCTMDAIKVYCDFSTGET
CIRAQPEEIPVKNWYRNSKAKKHVWVGETINGGTQFEYNVEGVTTKEMATQLAFMRLLAN
HASQNITYHCKNSIAYMDEETGNLKKAVILQGSNDVELVAEGNSRFTYTVLVDGCSKKTN
EWEKTVIEYKTNKPSRLPILDIAPLDIGGADQEIRLNIGPVCFK
NT seq
4095 nt
NT seq
+upstream
nt +downstream
nt
atgctcagctttgtggatacgcggactttgttgctgcttgcagtaacttcctgcctagca
acatgccaatccttacaagaggcaactgcaagaaagggcccaagtggagatagaggacca
cgcggagaaaggggtccaccaggcccaccaggcagagatggtgatgacggcatcccaggc
cctcctggtccccctggccctcccggcccccctggtcttggcgggaactttgctgctcag
tttgatggaaaaggaggtggccctggaccaatggggctgatgggaccgcgcggccctcct
ggtgcctctggagccccgggccctcaaggtttccagggacctcctggtgagcctggtgaa
cctggtcagactggtcctgctggtgctcgtggcccacctggtcctcctggcaaggctggt
gaggatggtcaccctggaaaacctggacgacctggtgagagaggagttgttggaccacag
ggtgctcgtggttttcctggaactcctggactccctggcttcaagggcattaggggtcac
aacggtctggatggattgaagggacagcctggtgccccaggtgtgaagggtgaacctggt
gcccctggtgaaaatggaactccaggtcaaacgggagcccgtggtctccctggtgagaga
ggacgtgttggtgcccctggccccgctggtgcccgtggaagtgatggaagcgtgggtcct
gtgggccctgctggtcccattgggtctgctggccctccaggcttcccaggtgctcctggc
cccaagggtgaacttggacctgttggtaaccctggccctgctggtcccgcgggtccccgt
ggtgaagtgggtcttccaggcctttctggccctgttggacctcctggcaaccccggagcc
aacgggcttcctggtgcgaagggtgctgctggcctgcccggtgttgctggggctcccggc
ctccctggaccccggggtattcctggccctgtcggcgctgctggtgctactggagccaga
ggacttgttggtgagcctggcccagctggttcgaaaggagagagcggcaacaagggcgag
cctggcgctgttgggcagccaggtcctcctggtcccagtggcgaagaaggaaagagaggc
tccactggagaaattggacccgctggccccccagggcctcctgggctgaggggaaatcct
ggctcccgtggtctacccggagctgacggcagagctggtgtcatgggccctgctggtagc
cgtggtgcaactggccctgctggtgtgcgaggtcccaatggagattctggtcgccctgga
gagcctggcctcatgggaccccgaggtttcccaggttcccctggaaatattggcccagct
ggtaaagaaggtcccgtgggtctccctggaattgatggccgacctggacccattggccca
gctggagcaagaggagagcctggcaacattggattccctggacccaaaggccccactggt
gatcctggcaaagctggtgaaaaaggtcatgctggtcttgctggcgctcggggtgctccg
ggtcctgacggcaacaatggcgctcagggaccccctggaccacagggtgtccaaggtgga
aaaggtgaacaaggtcctgctggtcctccaggcttccagggtctgcctggccctgcaggc
acagctggtgaagctggcaaaccaggagaaaggggtatccctggtgaatttggtctccct
ggccctgctggtgcaagaggcgagcgtgggcccccaggggaaagtggcgctgctggacct
gctgggcctattggaagccgaggtccttctggacccccagggcctgatgggaacaagggc
gaacctggcgtggttggcgctccaggcactgctggtccatctggtcctagtggactccca
ggagagaggggtgcggccggcattcctggaggcaagggagaaaagggtgaaactggtctc
agaggtgacgttggtagccctggcagagatggtgctcgtggtgctcctggcgctgttggt
gctcctggccctgctggagccaatggggaccggggtgaagctggtcccgctggccctgct
ggccctgctggtcctcgcggtagccctggtgaacgtggtgaggttggtcccgctggcccc
aatggatttgctggtcctgctggcgctgctggtcaagctggtgctaaaggagagagagga
accaaaggacccaagggtgaaaatggtcctgtcggtcccacaggccccgttggagctgct
ggtccatctggtccaaatggcccacctggtcctgctggaagtcgtggtgatggagggccc
cctggggctactggttttcctggtgctgctggacggactggtccccctggaccctctggt
atctctggcccccctggcccccctggtcctgctggtaaagaagggcttcgtgggcctcgc
ggtgaccaaggtccagttggtcgaagtggagagacaggtgcctctggccctcctggcttt
gctggtgagaagggtccctctggagagcctggtactgctggacctcctggcaccccaggt
ccacaaggtcttcttggcgctcctggctttctgggtctcccaggctctcgaggtgaacgt
ggtctaccgggtgtcgctgggtctgtgggtgaacctggccctctcggcattgcaggccca
cctggggcccgtggtccccctggtaatgtgggtaatcctggcgtcaatggtgctcctggt
gaagctggtcgtgacggcaaccctggaaatgatggccccccaggccgcgatggtcaaccc
ggacacaagggggagcgtggttaccccggtaacgcaggtcctgttgggactgccggcgct
cccggtcctcaaggccccgtgggtcccaccgggaaacacggaaaccgtggtgagcctggc
cctgccggtgctgttggtcctgctggtgccgttggcccaagaggtcccagtggcccacaa
ggtatccggggagacaagggggagcctggtgataaggggcccagaggtcttcccggctta
aagggacacaatgggttgcaaggtctcccgggtcttgctggtcatcatggcgatcaaggt
gctcctggtgctgtgggccccgccggtcctaggggccctgccggtccttctggccctgct
ggcaaagacggtcgcactggacagcctggtgcagtcggacctgctggcattcgtggctct
cagggtagccaaggtcctgctggccctcctggtccccccggccctcctggacctcctggc
ccaagcggtggtggttacgattttggttttgatggagacttctacagggctgaccagcct
cgctcaccaacttctctcagacccaaggattatgaagttgatgctactctgaaatcgctc
aacaaccagattgagacccttcttactccagaaggctctaggaagaacccagctcgcaca
tgccgagacctgagactcagccacccggaatggagcagtggttactactggattgaccct
aaccaaggatgtactatggatgctatcaaagtatactgtgatttctctactggcgaaacc
tgcatccgggctcaacctgaagagatcccagtcaagaactggtacagaaattccaaggcc
aagaagcatgtctgggtaggagaaactatcaatggtggtacccagtttgaatataatgtt
gaaggagtaaccaccaaggaaatggctacccaactggccttcatgcgcctgctggccaac
catgcctctcagaacatcacctaccattgcaagaacagcattgcatacatggatgaggaa
acaggcaacctgaaaaaggctgtcattctgcaaggatccaatgatgtcgaacttgttgcc
gagggcaacagcagattcacttacactgttcttgtagatggctgctctaaaaagacaaat
gaatgggagaagacagtcattgagtataaaacaaacaagccatctcgcctgcctatcctt
gatattgcacctttggacatcggtggcgctgaccaagaaatcagattgaacattggccca
gtctgtttcaaataa
DBGET
integrated database retrieval system
