Cervus canadensis (wapiti): 122439184
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Entry
122439184 CDS
T07554
Symbol
SOX30
Name
(RefSeq) transcription factor SOX-30 isoform X1
KO
K09271
transcription factor SOX15/30
Organism
ccad
Cervus canadensis (wapiti)
Brite
KEGG Orthology (KO) [BR:
ccad00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ccad03000
]
122439184 (SOX30)
Transcription factors [BR:
ccad03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
122439184 (SOX30)
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Gene cluster
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
Motif
Other DBs
NCBI-GeneID:
122439184
NCBI-ProteinID:
XP_043320208
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Position
4:39979422..40017378
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AA seq
765 aa
AA seq
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MERARPEQPPQQRQLPRATPPRPLRPAPPPLPVEGASFRAAAAEPCPSPPTPCAAAIATV
ASSCGEASASGVQPGARRLLQVKPEQMLLLPSGPPLPQAREEGAATSPAQARLLQLRPEL
LLLPPPPPASEGVPCRPELHPLQPRALHVKVEKQEPGSGLDLLAGPRRAVEACPKTSRTV
KAEGSGPLNSRRGDEKGKLEAEEIVSYAAKGGEGKTLAVLREGVIKTEAPERLREDCRLS
TEPASNGLAHGSKDVILTQPSSAFGPHQQDLRIPLTLHTVPPGARIQFQGPPPSELIRLT
KVPLTPVPIKMQSLLEPSVKIETKDVPLTVLPSDAGIPDTPFSKDRNGHVKRPMNAFMVW
ARIHRPALAKANPAANNAEISVQLGLEWNKLSEEQKKPYYDEAQKIKEKHREEFPGWVYQ
PRPGKRKRFPLSVSNVFSGTTQNIISTNPTTIYPYRSPTYSVVIPSLQNTITHPVGDSPP
TIQLPTPAVQRPSPITLFQPSVSSTAQVAVQAPSLPLRPALPPQRFAGPSQVDTHRLHSG
VNRSVKRPTPVSLESTNRIPTSASPAHSRFATSTIQPPKEYPSVSTCPRSTPISQAPIPH
SHVYQPPPLGHPAALFGTPPRFSFHHPYFLPGPHYFPSSTCPYSRPPFGYGNFPSSMPEC
LGYYEDRYQKHEAMFSALNRDYPFRDYPDERAHSEDSRSCENMDGTSCYNSHSHSGEEYL
NPMPQLDIGALENVFTAPTSTPSSIQQVNVTDSDEEEEEKVLRNL
NT seq
2298 nt
NT seq
+upstream
nt +downstream
nt
atggagagagccaggccggagcagccgcctcagcagcgccaactgccgcgggcgaccccg
ccgcgcccgctgcgccctgctccgcccccgctgcccgtcgagggcgcctccttccgggca
gcggccgcggagccctgtccgtcgccgcccaccccgtgcgcggccgccattgcgaccgtc
gcctcgtcgtgtggggaagcctcggcgtcgggcgtacagccaggggcacgacggctgctg
caggtgaaaccggagcagatgttactgctgccatccgggccaccactgcctcaggcccgg
gaggaaggcgccgccacctctcccgcgcaggcgcggctgctgcagctgaggcccgagctg
ctcctgctgccgccgccgccccccgcgtctgagggcgtcccctgcaggcctgagttgcac
ccgttgcagccccgagcgttgcacgttaaggtggagaagcaggagccgggatccggcttg
gatctgttggctgggcctcggagggccgtcgaggcgtgcccgaaaacctccaggacagtg
aaggcagaaggctccgggcccctcaacagccgccgaggggacgagaagggcaagttggag
gcggaggagatagtgagctacgcagcaaaaggcggagaaggcaaaaccctggcagtcctc
agagaaggagtcatcaaaacggaggcgcctgagagacttcgagaggactgcaggctcagt
acagagcccgcgtccaatggtctggcccatggcagcaaggatgtcatcctgacccagccg
tccagtgcctttgggccacatcagcaagacctcaggatccctttgactcttcacaccgta
ccccccggggcccggatccagtttcagggacctccaccttcagagctgatacgattgacc
aaggtcccgttgacaccagtgcctattaaaatgcagtccttattggagccttctgtaaaa
attgaaaccaaagatgtcccgctcacggtgctaccctcagatgcaggaataccagatact
cccttcagtaaggacagaaatggtcatgtgaagcgacccatgaatgcatttatggtttgg
gcaaggatccaccggccagcactagccaaagctaacccagcagccaacaatgcagaaatc
agtgtccagctcgggttagaatggaacaaacttagtgaagaacaaaagaaaccctattat
gatgaagcacaaaagattaaagaaaagcacagagaggaatttcctggttgggtttatcaa
cctcgtccagggaagcgaaaacgcttccctctaagcgtttccaatgtattttctggtacc
acacagaatatcatctctacaaatccaacaacaatttatccttatcgctcacctacctac
tctgtggtaattcccagcctacagaacaccatcactcatccagttggtgactctccaccg
accatccagctgcccacacctgcagtccagcgtccaagccccatcacgcttttccagccc
agcgtctccagtactgcccaggtggctgtccaggctccaagtctgcccctccgcccagca
ctcccaccccagcgctttgctgggccctcccaagtggacactcatcggctgcattctgga
gtcaatcgctctgtgaagagacccactcctgtttctctggagagcaccaacaggattccg
actagtgcaagtcctgcccattccagatttgcaacctcaaccatccaacctcccaaggag
tatcccagcgtttccacttgtcccagaagtactccaatttcccaggctcctattccacac
tcacacgtctaccagcccccaccccttggccatccagctgcattgtttgggacaccaccg
cgattctcttttcatcacccttactttctacctggacctcactacttcccatcaagcacg
tgcccttacagtcggcctccctttggctatggaaattttccaagttcaatgccagaatgc
cttggttattatgaagacaggtaccaaaaacacgaggctatgttttcagctttaaataga
gactatccttttagagactacccagatgaacgcgctcacagcgaagattctcgaagttgt
gagaacatggatgggacttcttgctataacagtcatagccacagtggggaagaatactta
aatcccatgcctcagctggacattggagccttggagaatgtcttcacagctccgacatca
actccctctagtatccagcaagtcaatgtcactgacagtgatgaggaggaagaagaaaaa
gtgctcaggaatttataa
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