Cervus canadensis (wapiti): 122439626
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Entry
122439626 CDS
T07554
Symbol
DDX42
Name
(RefSeq) ATP-dependent RNA helicase DDX42 isoform X1
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
ccad
Cervus canadensis (wapiti)
Pathway
ccad03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ccad00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122439626 (DDX42)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ccad03041
]
122439626 (DDX42)
Enzymes [BR:
ccad01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
122439626 (DDX42)
Spliceosome [BR:
ccad03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
122439626 (DDX42)
Complex B
122439626 (DDX42)
Complex C
U2 SnRNP specific factors
122439626 (DDX42)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
P-loop_SecA
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
122439626
NCBI-ProteinID:
XP_043320783
LinkDB
All DBs
Position
1:complement(14571240..14606276)
Genome browser
AA seq
947 aa
AA seq
DB search
MNWNKGGPGTKRGFGFGGFAISAGKKEEPKLPQQSHSAFGATSSSSGFGKSAPPQLPSFY
KIGSKRANFDEENAYFEDEEEDSSNVDLPYIPAENSPTRQQFHSKPVDSDSDDDPLEAFM
AEVEDQAARDMKRLEEKDKERKNVKGIRDDIEEEDDQEAYFRYMAENPTAGVVQEEEEDN
LEYDSDGNPIAPSKKIIDPLPPIDHSEIDYPPFEKNFYNEHEEITNLTPQQLIDLRHKLN
LRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTG
SGKTAAFIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAV
YGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQ
VRSIASHVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHS
GPSKWNWLTRRLVEFTSSGSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKV
ISDFKKKDIPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYT
LLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQNAWFRKSRFKGGKGKKLNIGGGGLGY
RERPGLGSENSDRGSNNNVMSNYEAYKPSTGAMGDRLTAMKAAFQSQYKSHFVAASLSNQ
KAGSSAAGASGWTSAGSLNSVPTNSAQQGHSSPDSPIASATKGIPGFGSTGNLSSAPVTY
PSAAAPGVNNTASGSNSREGTGGGNGKRERYTENRGGSRHSHGDSGNRHGDSPRHGDGGR
HGDGGRHGDGYRYPESSSRHTDSRRHADGHPHGENRHGGGGGRHGESRGASDGRNGESRK
ESCNRESKMDPKVDSPKVDKMDSKTDKTPDGFAVPEPPKRKKSRWDS
NT seq
2844 nt
NT seq
+upstream
nt +downstream
nt
atgaactggaataaaggtggccccggcactaagaggggctttggctttggaggttttgcc
atcagtgctggaaagaaggaggaaccaaagctcccacaacagtcccatagtgcctttggg
gcaaccagctcttcttctggctttggaaaatcagctccaccacagctcccttctttctac
aaaattggttctaaacgggccaacttcgatgaagaaaatgcatattttgaagatgaggaa
gaagattctagcaacgttgatttaccttacattcctgctgaaaactcacctacccgccag
caattccattccaagccagtagactctgacagtgatgatgatcccttagaggcattcatg
gctgaagtggaggatcaggcggctagagacatgaagaggctcgaagaaaaggacaaggaa
agaaaaaacgtaaagggtattcgagatgacattgaagaggaagatgaccaagaagcttat
tttcggtacatggcagagaatccaactgctggtgtggttcaagaggaggaggaagataat
ttggaatatgatagtgatgggaatccaattgcaccttccaaaaaaatcattgatcctctt
cctcccattgatcattcagagattgactatccaccatttgagaaaaatttttacaatgaa
catgaagagataaccaacctcaccccacagcagctaatagatctccggcataagctcaac
ctccgggtttctggtgctgcacctcctagaccaggaagtagttttgctcattttgggttt
gatgaacaacttatgcaccagattcggaaatctgagtacacacagcccactccaatacag
tgccagggtgtacctgtggcattaagtggtagagacatgattggtattgccaaaacaggc
agtgggaaaactgcagcctttatctggcccatgttgattcatataatggaccagaaagaa
ttggaaccaggtgatggaccaattgcagtgattgtgtgtcccactagggagctctgccag
cagatccatgcggaatgtaagcggtttgggaaagcatacaatcttcgatcagtggctgtg
tatggaggagggagcatgtgggaacaggccaaggcccttcaggaaggggcagagattgtt
gtttgtacaccaggtcgactgattgatcacgtgaagaagaaagctaccaaccttcagaga
gtctcctaccttgtgtttgatgaagcagatcgaatgtttgacatggggtttgagtaccag
gtgcggtccatagcaagtcatgtccgtcctgacagacagactctcttattcagtgcaact
tttcggaaaaagattgaaaagctggccagagacatcctgattgaccctattcgtgtggtg
cagggagatattggcgaggcaaatgaagatgtcactcagattgtggagattctccattct
ggacctagtaaatggaactggctcacccggcgtctagtggagtttacctcttcagggagt
gtcctcctgtttgttactaagaaagccaacgctgaagagctggccaataaccttaagcag
gagggtcataatcttggcctgctccatggtgacatggatcagagtgaaagaaacaaggtt
atttcagactttaagaaaaaggacatccccgtcctagtggccacagatgttgcagcccgt
ggtctggacattccttcaattaagactgtcattaactatgatgtggcacgagatattgac
acccatactcataggattggccgcacaggacgagccggtgagaagggcgtggcctatacc
ttgctgacacccaaggacagcaattttgctggtgaccttgttcggaacttggaaggagcc
aatcagcatgtttccaaggagctcctagatttggccatgcagaatgcctggtttcggaaa
tcccgcttcaaaggagggaaggggaaaaaactgaacattggtggaggaggcctgggctac
cgggagcggcctggccttggctctgagaactcggaccgaggaagtaacaacaatgtaatg
agcaattatgaggcctacaagccctccacgggagccatgggagaccggctgacggcaatg
aaagcggctttccagtcacagtacaagagtcactttgttgctgccagtttaagcaaccag
aaggctggaagctctgcggctggggcgagcggatggactagtgcagggagcttgaattca
gttccaactaattcagcccagcagggccacagcagtcctgacagccccattgccagcgcc
acgaagggtatcccaggctttggcagtactgggaacctcagcagtgccccagtgacctac
ccttctgccgccgctccgggcgtcaacaacacagcttcagggagtaacagccgagaaggg
actgggggtggcaatgggaaaagagagcgatatactgagaaccggggtggaagtcgtcac
agtcatggagatagtggcaatcggcatggcgatagtccacgtcatggagatgggggtcgc
catggagatgggggtcgccatggagatgggtaccgctacccagagagcagcagccgtcac
actgacagccgccgtcatgctgacggtcatcctcacggagaaaacaggcatggagggggc
ggaggccgacacggggagagccggggtgccagtgacggtcggaatggcgaaagcaggaag
gaaagttgtaatcgtgaaagcaagatggaccccaaggtggacagccccaaggtggacaag
atggacagcaagacagataagactcctgatggtttcgctgtccctgagccacccaagcgc
aagaaaagtcgatgggacagttag
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