Cervus canadensis (wapiti): 122440360
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Entry
122440360 CDS
T07554
Symbol
XAB2
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
ccad
Cervus canadensis (wapiti)
Pathway
ccad03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ccad00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122440360 (XAB2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccad03019
]
122440360 (XAB2)
03041 Spliceosome [BR:
ccad03041
]
122440360 (XAB2)
Messenger RNA biogenesis [BR:
ccad03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
122440360 (XAB2)
Spliceosome [BR:
ccad03041
]
Complex B
Other components
Prp19-related factors
122440360 (XAB2)
Complex C
122440360 (XAB2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
TPR_12
TPR_2
TPR_8
Suf
TPR_19
ARM_TT21
TPR_15
ARM_TT21_C
TPR_1
TPR_NPHP3
Motif
Other DBs
NCBI-GeneID:
122440360
NCBI-ProteinID:
XP_043322422
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All DBs
Position
4:90556349..90565331
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AA seq
855 aa
AA seq
DB search
MVVMARLSRPERPDLVFEEEDLPYEEEIMRNQFSVKCWLRYIEFKQGAPKPRLNQLYERA
LKLLPCSYKLWYRYLKARRAQVKHRCVTDPAYEDVNNCHERAFVFMHKMPRLWLDYCQFL
MDQGRVTHTRRTFDRALRALPITQHSRIWPLYLRFLRSHPLPETAVRGYRRFLKLSPESA
EEYIEYLKSSDRLDEAAQRLATVVNDERFVSKAGKSNYQLWHELCDLISQNPDKVQSLNV
DAIIRGGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAIRTVMTVRDFTQVFDSYA
QFEESMIAAKMETASELGREEEDDVDLELRLARFEQLISRRPLLLNSVLLRQNPHHVHEW
HKRVALHQGRPREIINTYTEAVQTVDPFKATGKPHTLWVAFAKFYEDNGQLDDARVILEK
ATKVSFKQVDDLASVWCECGELELRHENYDQALRLLRKATALPARRAEYFDGSEPVQNRV
YKSLKVWSMLADLEESLGTFQSTKAVYDRILDLRIATPQIVINYAMFLEEHKYFEESFKA
YERGISLFKWPNVSDIWSTYLTKFIARYGGRKLERARDLFEQALDGCPPKYAKTLYLLYA
QLEEEWGLARHAMAVYERATRAVEPAQQYDMFNIYIKQAAEIYGVTHTRSIYQKAIEVLS
DEHAREMCLRFADMECKLGEIDRARAIYSFCSQICDPRTTGAFWQTWKDFEVRHGNEDTI
REMLRIRRSVQATYNTQVNFMASQMLKVSGSATGTVSDLAPGQSGMDDMKLLEQRAEQLA
AEAERDQPSRAQSKILFVRSDASREELAELAHQANPEEIELGEDEDEDEMDLEPNEVRLE
QQSVPAAVFGSLKED
NT seq
2568 nt
NT seq
+upstream
nt +downstream
nt
atggtggtgatggcgcggctctcgaggcccgagcggccggaccttgtcttcgaggaagag
gacctcccctatgaggaggaaatcatgcggaaccagttctccgtcaagtgctggctccgc
tatatcgagttcaagcagggggcccccaagcccaggctcaatcaactgtatgagcgggcg
ctcaagctgctgccctgcagctacaaactctggtaccgctacctgaaggcccgccgggca
caggtgaagcatcgctgtgtgaccgaccccgcctatgaagatgtcaacaactgccatgag
agggcctttgtgttcatgcacaagatgccccggctgtggctggattactgccagttccta
atggaccagggacgtgtcacgcacacgcgccgaactttcgaccgggccctccgggcgttg
cccatcacccagcactctcgcatttggcccctgtacctgcgcttcctgcgctcacacccc
ctgcctgagactgccgtgcggggctaccggcgcttcctcaagctgagccctgaaagtgct
gaggagtatatcgagtacctcaagtcaagcgaccggctggatgaggcggcgcagcgcctg
gccaccgtagtgaacgacgaacgcttcgtgtcaaaggccggcaagtccaactaccagctg
tggcacgagctctgtgacctcatctcccagaaccctgacaaggtgcagtctctcaacgtg
gacgccatcatccgcgggggtctcacccgcttcaccgaccagctgggcaagctctggtgc
tcgctggccgactactacatccgtagcggtcacttcgagaaggctcgggacgtgtatgag
gaggccatccggactgtgatgactgtgcgggacttcacccaggtgttcgacagctacgcc
caattcgaggagagtatgattgcagcgaagatggagaccgcctcggagctggggcgggag
gaggaggacgacgtagacctggagctgcgcctggcccgcttcgagcagctcatcagccgg
cggcccctgctcctcaacagcgtcctgctgcgccagaacccgcaccacgtgcacgagtgg
cacaagcgtgtggccctgcaccagggccgcccccgggagatcatcaatacgtacacggag
gctgtgcagacggtggaccccttcaaggccaccggcaagccccacacgctgtgggtcgct
ttcgccaagttttacgaggacaacgggcagctggacgatgcccgcgtcatcttggaaaaa
gccaccaaggtgagcttcaagcaggtggacgacctggccagcgtgtggtgcgagtgtggc
gagctggagctccggcacgagaactacgaccaggccttgcgacttctgcggaaggcgaca
gcactgcctgcccggcgcgctgaatacttcgatggctcagagcctgtgcagaaccgtgtg
tacaagtctctgaaggtgtggtccatgctggccgacctggaggagagcctcggcaccttc
cagtccaccaaggcagtgtatgatcgcatcctggacctgcgcatcgctacgccacagatc
gtcattaactacgccatgttcctggaggagcacaagtactttgaggagagcttcaaggca
tatgagcgcggcatctcgttgttcaagtggcccaacgtgtcggacatctggagtacttac
ctgacgaagttcattgcccgctacgggggccgcaagctggagcgggcacgcgacctcttt
gagcaggcgctggatggctgccctcccaaatacgccaagacgctgtacctgctgtacgcc
cagctggaggaagagtggggcctggcgcggcacgccatggcagtgtacgagcgcgccacc
agggccgtggagcccgcgcagcagtacgacatgttcaacatctacatcaagcaggcggcg
gagatctacggcgtcacccacacccgcagcatctatcagaaggccattgaggtgctgtct
gatgagcatgcccgggagatgtgcctgcggtttgctgacatggagtgcaagctcggggag
atcgaccgcgcccgggccatatacagcttctgctcgcagatctgcgacccccggacgacc
ggtgccttctggcagacgtggaaggacttcgaggtccggcatggcaacgaggacaccatc
cgggagatgctgcggatccgccgcagtgtgcaggccacatacaacacacaggtcaacttc
atggcctcacagatgctcaaggtgtcgggcagcgccacaggcaccgtgtccgacctggca
cccgggcagagcggcatggatgacatgaagctactggagcagcgtgccgagcagctggcg
gcggaggctgagcgggaccagccctccagggcccagagcaagatcctgttcgtgaggagt
gacgcctctcgggaggagctggctgagctggcccatcaggccaacccggaggagattgag
ctgggagaagacgaggatgaggatgagatggacctggagcccaacgaggtgcgcctggag
cagcagagcgtgccagccgctgtgttcgggagcctgaaggaagactga
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