Cervus canadensis (wapiti): 122441362
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Entry
122441362 CDS
T07554
Symbol
SNRNP200
Name
(RefSeq) U5 small nuclear ribonucleoprotein 200 kDa helicase
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
ccad
Cervus canadensis (wapiti)
Pathway
ccad03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ccad00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122441362 (SNRNP200)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ccad03041
]
122441362 (SNRNP200)
Enzymes [BR:
ccad01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
122441362 (SNRNP200)
Spliceosome [BR:
ccad03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
122441362 (SNRNP200)
Complex C
U5 SnRNP specific factors
122441362 (SNRNP200)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
WHD_SNRNP200
DEAD
Helicase_PWI
ResIII
Helicase_C
BRR2_plug
AAA_22
AAA_30
PhoH
SWI2_SNF2
DUF603
Motif
Other DBs
NCBI-GeneID:
122441362
NCBI-ProteinID:
XP_043323727
LinkDB
All DBs
Position
5:complement(2337675..2362586)
Genome browser
AA seq
2136 aa
AA seq
DB search
MADVTARSLQYEYKANSNLVLQADRSLIDRTRRDEPTGEVLSLVGKLEGTRMGDKAQRTK
PQMQEERRAKRRKRDEDRHDINKMKGYTLLSEGIDEMVGIIYKPKTKETRETYEVLLSFI
QAALGDQPRDILCGAADEVLAVLKNEKLRDKERRKEIDLLLGQTDDTRYHVLVNLGKKIT
DYGGDKEIQNMDDNIDETYGVNVQFESDEEEGDEDVYGEVREEASDDDMEGDEAVVRCTL
SANLVASGELMSSKKKDLHPRDIDAFWLQRQLSRFYDDAIVSQKKADEVLEILKTASDDR
ECENQLVLLLGFNTFDFIKVLRQHRMMILYCTLLASAQSEAEKERIMGKMEADPELSKFL
YQLHETEKEDLIREERSRRERVRQSRMDTDLETMDLDQGGEALAPRQVLDLEDLVFTQGS
HFMANKRCQLPDGSFRRQRKGYEEVHVPALKPKPFGSEEQLLPVEKLPKYAQAGFEGFKT
LNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIY
IAPMRSLVQEMVGSFGKRLATYGITVAELTGDHQLCKEEISATQIIVCTPEKWDIITRKG
GERTYTQLVRLIILDEIHLLHDDRGPVLEALVARAIRNIEMTQEDVRLIGLSATLPNYED
VATFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQ
VLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPY
GFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGR
WTELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQLPIESQMVSKLPDM
LNAEIVLGNVQNAKDAVNWLGYAYLYIRMLRSPTLYGISHDDLKGDPLLDQRRLDLVHTA
ALMLDKNNLVKYDKKTGNFQVTELGRIASHYYITNDTVQTYNQLLKPTLSEIELFRVFSL
SSEFKNITVREEEKLELQKLLERVPIPVKESIEEPSAKINVLLQAFISQLKLEGFALMAD
MVYVTQSAGRLMRAIFEIVLNRGWAQLTDKTLNLCKMIDKRMWQSMCPLRQFRKLPEEVV
KKIEKKNFPFERLYDLNHNEIGELIRMPKMGKTIHKYVHLFPKLELSVHLQPITRSTLKV
ELTITPDFQWDEKVHGSSEAFWILVEDVDSEVILHHEYFLLKAKYAQDEHLITFFVPVFE
PLPPQYFIRVVSDRWLSCETQLPVSFRHLILPEKYPPPTELLDLQPLPVSALRNSAFESL
YQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQNSEGRCVYIT
PMEALAEQVYMDWYEKFQDRLSKKVVLLTGETSTDLKLLGKGNIIISTPEKWDILSRRWK
QRKNVQNINLFVVDEVHLIGGENGPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKDV
AHWLGCSATSTFNFHPNVRPVPLELHIQGFNISHTQTRLLSMAKPVYHAITKHSPKKPVI
VFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYL
HEGLSPLERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYP
IYDVLQMVGHANRPLQDDEGRCVIMCQGSKKDFFKKFLYEPLPVESHLDHCMHDHFNAEI
VTKTIENKQDAVDYLTWTFLYRRMTQNPNYYNLQGISHRHLSDHLSELVEQTLSDLEQSK
CISVEDEMDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKVRGLIEIISNAAEYENIPI
RHHEDNLLRQLAQKVPHKLNNPKFNDPHVKTNLLLQAHLSRMQLSAELQSDTEEILSKAI
RLIQACVDVLSSNGWLSPALAAMELAQMVTQAMWSKDSYLKQLPHFTSEHIKRCTDKGVE
SVFDIMEMEDEERNALLQLSDSQIADVARFCNRYPNIELSYEVVDKDAIRSGGPVVVLVQ
LEREEEVTGPVIAPLFPQKREEGWWVVIGDAKSNSLISIKRLTLQQKAKVKLDFVAPATG
AHNYTLYFMSDAYMGCDQEYKFSVDVKEAETDSDSD
NT seq
6411 nt
NT seq
+upstream
nt +downstream
nt
atggcggatgtaaccgcccgtagcctgcaatacgagtacaaagcgaactcgaatcttgtc
ctccaagctgaccgctctctcattgaccggacccgccgggatgaacccacaggagaagtg
ctatccctggttgggaagctggagggcacccggatgggagataaggctcaacgaaccaaa
ccacagatgcaagaggaaagaagagctaagcgaagaaagcgtgatgaggaccggcacgac
atcaacaagatgaagggttatactctgctctcagagggcatcgacgagatggtgggcatc
atctataagcccaagaccaaggagacccgggagacttatgaagtgctgctcagtttcatc
caggctgcccttggggaccagccacgtgatatcctttgtggggcagcagatgaagttctc
gctgttctaaagaatgaaaagcttcgggacaaggaaaggagaaaggagattgatctgctg
ctgggtcagacagatgataccagataccatgtgctagtaaacttgggcaaaaagatcaca
gactatggtggagacaaggagatccagaatatggacgacaacattgatgagacatatggt
gtgaatgtacagtttgagtctgatgaggaggaaggtgatgaagatgtgtacggggaggtt
cgtgaagaggcatctgacgatgacatggaaggggatgaggccgtggtgcgctgcaccctc
tcagctaaccttgtggcctcaggggaactgatgagttccaagaagaaggatctgcaccct
cgggacattgatgccttttggcttcagcggcagctcagtcgcttctacgatgatgccatt
gtgtcacagaagaaggcagatgaggtgttggagattttgaagacagccagcgacgaccgg
gagtgtgagaaccagctggttctgctccttggtttcaatacttttgattttatcaaggtg
ttgcggcaacacaggatgatgattttgtactgtaccttgctggccagcgcacagagtgaa
gccgagaaggagaggatcatgggaaagatggaggctgacccagagctgtccaagttcctc
taccagctgcacgaaacggagaaggaggatctgatccgggaggaacggtcccgcagagag
cgagtgcgtcagtcccggatggacacggacctggaaaccatggatctggaccagggcgga
gaggcactggctccgcggcaggttctggacttggaggaccttgtatttacccaggggagc
cactttatggccaacaagcgctgccagcttcctgacgggtccttccggcgccagcgcaag
ggctacgaagaggtgcacgtgcctgccctgaagcccaagcccttcggctctgaagaacaa
cttcttccagtggagaagctgcccaagtatgcccaggctggctttgagggcttcaaaaca
ctgaatcggatccagagtaagctctaccgtgccgccctggagacggatgaaaatctgctg
ctctgcgctcctacaggtgccgggaagaccaacgtggctctgatgtgtatgctccgggag
atagggaagcacattaacatggacggcaccatcaacgtggatgacttcaagatcatctac
atcgcccccatgcggtctctggtgcaggagatggtgggcagttttggaaaacgcctggcc
acatacggcatcactgttgcggagctgactggcgaccaccagctgtgtaaggaggagatc
agtgccacccagatcatcgtctgcacccccgagaagtgggacatcattacccgcaagggc
ggggaacgcacctacacccagctcgtgcggctcatcatcctggatgagatccatcttctc
cacgatgacagaggtcctgtcctggaagcgttggtggccagggccatccggaacattgaa
atgacccaggaggacgtccgcctcattggccttagcgccaccctccccaactacgaagat
gtggctacctttctacgtgtagatcctgccaagggcctcttctactttgacaacagcttc
cgcccagtgcctctagaacagacgtatgtgggcatcacggagaagaaagccatcaagcgt
ttccaaatcatgaatgaaattgtttatgagaaaatcatggaacatgctggaaaaaatcag
gtactggtgtttgtgcactcccggaaggagaccgggaagacagccagggccatccgggac
atgtgcctggagaaggacacgctgggtctgtttctgagagagggctcagcctccacagag
gtcctccggacagaagctgagcagtgcaagaacctggagctgaaggacctgctgccctat
ggctttgctattcatcacgcgggcatgaccagagttgaccggacgcttgtagaggacctt
ttcgctgataaacacattcaggttttagtttccacagcaaccctggcttggggtgtgaat
ctccctgcccacactgtcatcatcaaaggcacccaggtgtacagtccggagaaggggcgc
tggactgaactaggagcactggacatcctgcaaatgctgggacgagcgggaagacctcag
tacgacaccaagggcgaaggcatcctcatcacctctcacggagagctgcagtactacctg
tcactcctcaaccagcagcttcccattgagagccagatggtgtccaagctgcccgacatg
ctcaacgcggagatcgtgctggggaacgttcagaatgcaaaggatgcagtgaactggctg
ggttacgcctacctgtatatccgaatgctccggtccccgaccctctatggcatctctcac
gatgacctcaagggagacccactgctagaccagcgccgattggatctggttcataccgct
gctttgatgctggataagaacaacctggtcaagtacgacaagaagacgggcaacttccag
gtgacagaactgggccgtatagccagccactactacatcaccaatgataccgtgcagacc
tacaaccagctgctgaagccgacccttagcgagattgagctcttcagagtcttctcgttg
tcctcagagttcaagaacatcaccgtgagagaggaggagaagctggagctgcagaagctg
ctggagagggtgcccatccccgttaaggagagcattgaggagcccagtgcaaagatcaac
gtgctcctgcaggctttcatctcgcagctgaagctggagggctttgcgctgatggctgac
atggtctatgtgacccagtcggctggccgcttgatgcgggccatctttgaaattgtcctg
aaccgaggctgggcgcagcttacagacaagaccctgaacctctgcaagatgatcgacaaa
cgcatgtggcagtccatgtgtcctctgcgccagttccggaagctccctgaggaggttgtg
aagaagatcgagaagaaaaacttcccctttgagcgtctgtacgacctgaaccacaatgag
ataggtgagctcatccgcatgcccaagatggggaagaccatccacaagtacgtccacctc
ttccccaagctggagctgtcagtgcacctgcagccaatcacgcgctccaccctgaaggtg
gagctgaccatcacacccgacttccagtgggacgagaaggtccacggctcgtcggaggcc
ttctggattctcgtggaggacgtggacagcgaggtgatcctgcaccacgagtacttcctg
ctcaaggccaagtatgcccaggacgagcacctcatcacgttcttcgtgcccgtctttgag
ccactgccccctcagtacttcatccgtgtggtgtccgaccgctggctttcttgtgagacc
cagctgcccgtctctttccggcacctgatcctgccagagaagtacccgcccccaaccgag
ctgctagaccttcagcctttgcctgtgtctgccctgagaaacagtgcctttgagagcctc
taccaggataagtttcctttcttcaaccccatccagacccaggtgttcaacactgtgtac
aacagcgacgacaatgtgtttgtgggggcccccacgggcagcgggaagaccatctgtgcg
gagttcgccatcctgcggatgctgctgcaaaactcagagggccgctgtgtctacatcacc
cccatggaggccctggccgaacaggtatacatggactggtatgagaagttccaggatagg
ctcagcaagaaggtggtgctcctgacaggggagaccagcacggacctgaagctcttgggc
aaaggcaacatcatcatcagcacgcccgagaagtgggacatcctctcccggcggtggaag
cagcgcaagaatgtgcagaacatcaacctcttcgtggtggacgaggtccacctcatcggg
ggcgagaatgggcctgtcctggaggtcatctgttcccggatgcgctacatctcctcccag
attgagcggcccatccgcatcgtggctctcagctcttcgctctccaacgcgaaggatgtg
gcccactggctgggctgcagcgccacctccaccttcaatttccacccaaatgtgcgcccc
gtgcccttggagctgcacatccagggcttcaacatcagccacacgcagactcgcctgctg
tccatggccaagcccgtgtaccatgccatcaccaagcactcgcccaagaagcctgtcatc
gtcttcgtgccctcccgcaagcagacgcgcctcaccgccatcgacatcctcaccacgtgt
gcggccgacatccagcgccagaggtttctgcactgcaccgagaaggacctgatcccgtac
ctggagaagctgagtgatagcacgctcaaggagacgctgctgaacggggtgggctacctg
cacgaggggctcagccccctggagcggcgcctggtggagcagctcttcagctcaggggcc
atccaggtggtggtcgcttctcggagtctctgctggggcatgaatgtggccgcccacctg
gtgatcatcatggacacccagtactacaacggcaagatccacgcgtacgtggattacccc
atctacgacgttctgcagatggtgggccatgccaaccgccctctgcaggatgatgagggg
cgctgcgtcatcatgtgccagggctccaagaaggatttcttcaagaagttcttgtatgag
cctttgccggtggagtctcacctggaccactgtatgcatgaccacttcaatgccgagatc
gtcaccaagaccatcgagaacaagcaggacgctgtggactacctcacctggaccttcctg
taccgccgcatgacccagaaccccaattactacaacctgcagggcatctcccatcgtcac
ctgtctgaccacttgtcggagctcgtggagcagaccctcagtgacctggagcagtccaag
tgcatcagtgttgaggatgagatggacgtggcgcccctgaacctgggcatgatcgccgcc
tactattatatcaactacaccaccatcgagctcttcagcatgtccctgaacgccaagacc
aaggtgcgagggctcatcgagatcatctccaacgcggccgagtacgagaacatccccatc
cggcaccacgaagacaacctcctgcggcagctggcccagaaggtcccccacaagctgaat
aaccctaagttcaacgacccgcacgtcaagaccaacctgcttctgcaggctcacctgtcc
cgcatgcaactgagcgctgagctgcagtcggacactgaggagatcctcagcaaggccatc
cggctcatccaggcctgtgtggacgtcctctccagcaatggctggctcagcccggccctg
gcggccatggagctggcccagatggtcacccaggccatgtggtccaaggactcctacctg
aaacagctgccgcacttcacctccgagcacatcaagcgttgcacagacaagggggtggag
agtgttttcgacatcatggaaatggaggatgaagagcgcaacgccttgctccagctgtca
gacagccagatcgcggacgtggcccgcttctgtaaccgctaccccaacattgaactgtcc
tacgaggtggtggacaaggatgccatccgcagtggcgggccagtcgtggtgctggtgcag
ctggagcgggaggaggaagtcacgggccctgtgatcgcgcctctcttcccgcagaaacgt
gaagagggctggtgggtggtgatcggagacgccaagtccaacagtctcatctccatcaag
aggctgaccctgcagcagaaggccaaggtgaaactcgactttgtggccccggccactggc
gcccacaactacaccctgtacttcatgagtgacgcttacatgggatgtgaccaggagtac
aaattcagcgtggatgtgaaagaagccgagacagacagtgactcagactga
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integrated database retrieval system
