KEGG   Cervus canadensis (wapiti): 122442032
Entry
122442032         CDS       T07554                                 
Symbol
SDC1
Name
(RefSeq) syndecan-1
  KO
K06257  syndecan 1
Organism
ccad  Cervus canadensis (wapiti)
Pathway
ccad04512  ECM-receptor interaction
ccad04514  Cell adhesion molecule (CAM) interaction
ccad04820  Cytoskeleton in muscle cells
ccad05144  Malaria
ccad05205  Proteoglycans in cancer
ccad05418  Fluid shear stress and atherosclerosis
Brite
KEGG Orthology (KO) [BR:ccad00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    122442032 (SDC1)
   04514 Cell adhesion molecule (CAM) interaction
    122442032 (SDC1)
 09140 Cellular Processes
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    122442032 (SDC1)
 09160 Human Diseases
  09161 Cancer: overview
   05205 Proteoglycans in cancer
    122442032 (SDC1)
  09174 Infectious disease: parasitic
   05144 Malaria
    122442032 (SDC1)
  09166 Cardiovascular disease
   05418 Fluid shear stress and atherosclerosis
    122442032 (SDC1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:ccad04131]
    122442032 (SDC1)
  09183 Protein families: signaling and cellular processes
   04090 CD molecules [BR:ccad04090]
    122442032 (SDC1)
   00535 Proteoglycans [BR:ccad00535]
    122442032 (SDC1)
Membrane trafficking [BR:ccad04131]
 Exocytosis
  Calcium ion-dependent exocytosis
   Acrosomal exocytosis proteins
    122442032 (SDC1)
CD molecules [BR:ccad04090]
 Proteins
  122442032 (SDC1)
Proteoglycans [BR:ccad00535]
 Cell surface proteoglycans
  Syndecan family (transmembrane HSPG)
   122442032 (SDC1)
SSDB
Motif
Pfam: Syndecan Romo1
Other DBs
NCBI-GeneID: 122442032
NCBI-ProteinID: XP_043325238
LinkDB
Position
5:74575276..74599809
AA seq 312 aa
MRRAALWLWLCALALRLQPALPHSVAVNMPPEDQDGSGDDNDNFSGSGAGALPDITSSQI
PSTWKDLGPLTTTATAPEPTSPDAIAASTTVLPTREQPEGGGPVLLAEAEPGLTAQEKEA
FHPPSKTTLHPTAHRVSTARATTAPGPATSHPHRDVQPDHHETSAPTGRGHLEPHTPHME
DGGPPATENAAGEDPSTQVPVVEGSGEQDFTFDVSGENAAGAAVEPGSRNGAPGDPEATG
ATGASQGLLDRKEVLGGVIAGGLVGLIFAVCLVGFMLYRMKKKDEGSYSLEEPKQANGGA
YQKPTKQEEFYA
NT seq 939 nt   +upstreamnt  +downstreamnt
atgaggcgcgcggcgctctggctgtggctctgcgcgctggcgctgcgcctacagccggcc
ctcccgcacagtgtggccgtaaacatgccccctgaagatcaggatggctctggggatgac
aatgacaacttctctggctcgggcgcaggtgctctgccagatatcacctcgtcacagata
ccctccacctggaaggacctggggcctctgacgaccacagccacggctccagagcccacc
agcccagacgccatcgccgcctccaccaccgtcctgccaaccagagagcagcctgagggg
ggcgggccggtgctcctggcagaggcggagcctggcctcaccgcccaggagaaggaggcc
ttccacccacccagcaagaccacgctgcacccgaccgctcaccgggtgtccacagccaga
gccaccacagccccgggacccgccacctcccatccccacagggacgtgcagcccgaccac
catgagacctcagctcccacaggccggggccatctggagccgcacacgccccacatggag
gatggaggtcctcctgccactgagaacgcggctggggaggacccctccacccaggtccca
gtggtagagggctctggggagcaggacttcacctttgacgtgtccggggagaacgcagcc
ggggccgcggtggaacctggctcacggaacggggccccaggggatcctgaggccacaggg
gctacgggggcctcgcagggcctcctggaccggaaggaagtgctgggaggggtcattgct
ggaggcctcgtggggctcatctttgccgtgtgcctggtgggtttcatgctgtaccggatg
aagaagaaggacgagggcagctactccttggaggagccaaagcaagccaatggcggggcc
taccagaagcccactaagcaggaggagttctacgcctga

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