Cervus canadensis (wapiti): 122442134
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Entry
122442134 CDS
T07554
Symbol
RC3H2
Name
(RefSeq) roquin-2 isoform X1
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
ccad
Cervus canadensis (wapiti)
Brite
KEGG Orthology (KO) [BR:
ccad00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ccad03000
]
122442134 (RC3H2)
04121 Ubiquitin system [BR:
ccad04121
]
122442134 (RC3H2)
Transcription factors [BR:
ccad03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
122442134 (RC3H2)
Ubiquitin system [BR:
ccad04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
122442134 (RC3H2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-RING_5
zf-CCCH
zf-RING_UBOX
zf-RING_2
zf-CCCH_4
Prok-RING_4
zf-C3HC4
zf_CCCH_4
zf-CCCH_UNK
zf-C3HC4_4
Xin
zf-C3HC4_2
Motif
Other DBs
NCBI-GeneID:
122442134
NCBI-ProteinID:
XP_043325423
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All DBs
Position
5:complement(89206591..89256112)
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AA seq
1189 aa
AA seq
DB search
MPVQAAQWTEFLSCPICYNEFDENVHKPISLGCSHTVCKTCLNKLHRKACPFDQTAINTD
IDVLPVNFALLQLVGAQVPDHQSVKLSNLGENKHYEVAKKCVEDLALYLKPLSGGKGVAS
LNQSALSRPMQRKLVTLVNCQLVEEEGRVRAIRAARSLGERTVTELILQHQNPQQLSANL
WAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKTSIG
HVVQLLYRASCFKVTKRDEDSSLMQLKEEFRSYEALRREHDAQIVHIAMEAGLRISPEQW
SSLLYGDLAHKSHMQSIIDKLQSPESFAKSVQELTIVLQRTGDPANLNRLRPHLELLANI
DPNPDAVSPTWEQLENAMVAVKTVVHGLVDFIQNYSRKGHETPQPQPNSKYKTSMCRDLR
QQGGCPRGTNCTFAHSQEELEKYRLRNKKINATVRTFPLLNKVGVNNTVTTTAGNVISVI
GSTETTGKIVPSTNGISNAENSVSQLIPRSTDSTLRALETVKKVGKVGTNGQNAAGPSAE
SVTENKIGSPPKTPVSNVAATSAGPTNAGTELNSLPPKSSPFITRVPVYPQHSENIQYFQ
DPRTQIPFEVPQYPQTGYYPPPPTVPAGVAPCVPRFVRSNNVPESSLPPASMPYADHYST
FSPRDRMNSSPYQPPPPQPYGPVPPVPSGMYAPVYDSRRIWRPPMYQRDDIIRSNSLPPM
DVMHSSVYQTSLRERYNSLDGYYSVACQPPSEPRTTVPLPREPCGHLKTSCEEQIRRKPE
QWAQYHTQKAPLVSSTLPVATQSPTPPSPLFSVDFRTDFSESVSGTKFEEDHLSHYSPWS
CGTIGSCINAIDSEPRDVIANSNAVLMDLDSGDVKRRVHLFETQRRTKEEDPIIPFSDGP
IISKWGAISRSSRTGYHTTDPVQATASQGSATKPISVSDYVPYVNAVDSRWSSYGNEATS
SAHYIERDRFIVTDLSGHRKHSSTGDLLSIELQQAKSNSLLLQREANALAMQQKWNSLDE
GRHLTLNLLSKEIELRNGESDYTEDAADTKPDRDIELELSALDTDEPDGQGEQIEEILDI
PLGISSQNDQLLNGTAVENGHPVQQHQEEPLEQSRQSLGEDHVILEERKTILPVTSCFSQ
PLPVSISNASGLPITTSVSVGNLILKTHVMSEDKNDFLKSVANGKMVNS
NT seq
3570 nt
NT seq
+upstream
nt +downstream
nt
atgcctgtgcaggcagctcaatggacagaatttctgtcctgtccaatctgctataatgaa
tttgatgagaacgtgcacaaacccatcagtttaggttgttcacacactgtttgcaagacc
tgcttgaataaacttcaccgaaaagcttgtccttttgaccagactgccatcaacacagac
attgatgtgcttcctgtcaacttcgcacttctccagttagttggagcccaggtaccagat
catcagtcagtcaagttaagtaatttaggtgagaacaaacactatgaggttgcaaagaaa
tgtgttgaagatttggcgctctacttaaaaccactaagtggaggtaaaggtgtagctagt
ttgaaccagagtgcactgagccgtccgatgcagaggaaactggtgacgcttgtaaactgt
cagctggtggaggaggaaggccgtgtaagggccatccgagccgcgcgctccctgggagag
aggacggtgacggagctgatactgcagcaccagaaccctcagcagctgtctgccaacctg
tgggccgccgtcagggctcgggggtgccagtttctagggccagctatgcaagaagaggct
ttgaagttggtgttgctggcattagaagatggttctgctctctcaaggaaagttctggta
ctttttgttgtgcaaagactagaaccaagatttcctcaggcatcgaaaacaagtattggt
catgttgtgcaactactgtatcgagcttcttgttttaaggttaccaaaagggatgaagac
tcttccctgatgcagctaaaggaggaattccgcagttatgaggctttacgcagagaacat
gatgcccaaattgttcatattgctatggaagcaggactccgtatttcacctgagcagtgg
tcctcacttttgtatggtgacttggcgcataaatcacacatgcagtcgatcattgataag
ctgcagtctccagaatcctttgcaaagagtgttcaggaattgacaattgttttgcaacga
acaggtgacccagctaacttaaatagattgaggcctcacttagagcttcttgcaaacatc
gaccctaacccagatgctgtttcaccaacttgggaacagctagaaaatgcaatggtagct
gttaaaacagtggttcatggcctagtggacttcatacaaaattatagtagaaaaggccat
gagacacctcagcctcagccaaacagcaaatacaagaccagcatgtgtcgagatttgcga
cagcaaggagggtgtccgcgaggaacaaattgtacttttgcccattctcaggaagagctt
gaaaagtatcgattaaggaacaaaaagatcaatgcaactgtaagaacgtttcctcttcta
aataaagttggtgtaaacaacactgtcacaaccacagccggaaatgtcatttctgtcata
ggaagtactgaaacaacggggaaaattgttccaagtacaaatggaatttcaaatgcagaa
aacagtgtttcccagctaattccacgtagtactgacagtacattaagagctctggagact
gtgaagaaggtggggaaggttggcaccaatggtcagaatgctgctgggccttctgcagag
tctgtaactgaaaataaaattggctctccacctaagactcctgtaagtaatgtagcggct
acctcagctgggcccactaatgctggaacagagctgaattctctgcctccaaaatccagc
ccatttatcactagagtaccagtatatcctcagcattctgaaaacattcagtattttcaa
gatccaaggactcagataccctttgaagtcccacagtacccacagactggatactaccca
ccacctccaacggtaccagctggtgtggctccctgtgttcctcgctttgtgaggtccaat
aatgttccagagtcctccctcccacctgcttccatgccatatgccgatcattacagtaca
ttttcccctcgagatcgaatgaattcttctccttaccaacctcctcctccgcagccgtat
ggaccagttcctccagtaccttctggaatgtatgctcctgtgtatgacagcaggcgcatc
tggcgcccacctatgtaccaacgagatgacattattagaagcaattctttacctccaatg
gatgtgatgcactcgtctgtgtatcagacgtctttacgggaaagatataactcattagat
gggtattattcagtggcttgtcagccaccgagcgagccaaggacaactgtgcctttacca
agggaaccttgtggtcatttgaagaccagttgcgaggagcagataagaagaaagccagag
cagtgggcacagtaccacactcagaaagcacctcttgtttcttcaactcttcctgtggca
acacagtcaccaacaccaccttctcctctattcagtgtagactttcgtactgatttctct
gaaagtgtgagtggcacaaaatttgaagaggatcatctttcccattattctccctggtct
tgtggcaccatcggttcttgtataaatgctattgattcagagcccagagatgttattgct
aattcaaatgcggtattaatggacctggatagtggggatgttaagagaagagtgcattta
tttgaaactcagagaaggacaaaagaagaagatccaataattccttttagtgatggacct
atcatctcaaaatggggtgcgatttctagatcttcccgtactggttaccataccacggac
cctgtccaggccactgcttcccaaggaagtgcaaccaagcccatcagtgtatcagattat
gtcccttatgtcaatgctgttgattcaaggtggagttcatatggtaatgaggctacatca
tcagcacattatattgaacgggacagattcattgttaccgatttatctggtcatagaaag
cattccagtaccggagatcttttgagcattgaacttcagcaggccaagagtaactcattg
cttcttcagagggaggccaatgctctggctatgcaacaaaagtggaattccctggatgaa
ggccgtcacctcacgttaaatcttctaagcaaggaaattgaactgagaaatggagagagt
gattatacagaagatgcagctgatactaagcctgatagggatattgagttagagctgtca
gcacttgatactgatgaacctgatggacaaggtgaacagattgaagagatcctggacata
ccgcttggtatcagttctcaaaatgatcagttgctgaatggaacagcagtagagaatggg
catccagtccagcagcaccaagaggagcctctggagcagagcagacagagtttaggtgaa
gaccatgtgattctggaagagcgaaaaacaattctgccggtaacttcttgctttagccag
ccactcccagtgtccatcagcaatgcgagtggcctacccatcaccacatctgtcagtgtt
ggcaacctcattctgaaaactcatgttatgtctgaagataaaaacgactttttaaaatct
gttgcaaatgggaagatggttaatagctga
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