KEGG   Cervus canadensis (wapiti): 122442371
Entry
122442371         CDS       T07554                                 
Symbol
RXRA
Name
(RefSeq) retinoic acid receptor RXR-alpha isoform X1
  KO
K08524  retinoid X receptor alpha
Organism
ccad  Cervus canadensis (wapiti)
Pathway
ccad03320  PPAR signaling pathway
ccad04148  Efferocytosis
ccad04151  PI3K-Akt signaling pathway
ccad04659  Th17 cell differentiation
ccad04919  Thyroid hormone signaling pathway
ccad04920  Adipocytokine signaling pathway
ccad04928  Parathyroid hormone synthesis, secretion and action
ccad04932  Non-alcoholic fatty liver disease
ccad04976  Bile secretion
ccad05160  Hepatitis C
ccad05200  Pathways in cancer
ccad05202  Transcriptional misregulation in cancer
ccad05207  Chemical carcinogenesis - receptor activation
ccad05216  Thyroid cancer
ccad05222  Small cell lung cancer
ccad05223  Non-small cell lung cancer
ccad05226  Gastric cancer
ccad05417  Lipid and atherosclerosis
Brite
KEGG Orthology (KO) [BR:ccad00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   04151 PI3K-Akt signaling pathway
    122442371 (RXRA)
 09140 Cellular Processes
  09141 Transport and catabolism
   04148 Efferocytosis
    122442371 (RXRA)
 09150 Organismal Systems
  09151 Immune system
   04659 Th17 cell differentiation
    122442371 (RXRA)
  09152 Endocrine system
   04920 Adipocytokine signaling pathway
    122442371 (RXRA)
   03320 PPAR signaling pathway
    122442371 (RXRA)
   04919 Thyroid hormone signaling pathway
    122442371 (RXRA)
   04928 Parathyroid hormone synthesis, secretion and action
    122442371 (RXRA)
  09154 Digestive system
   04976 Bile secretion
    122442371 (RXRA)
 09160 Human Diseases
  09161 Cancer: overview
   05200 Pathways in cancer
    122442371 (RXRA)
   05202 Transcriptional misregulation in cancer
    122442371 (RXRA)
   05207 Chemical carcinogenesis - receptor activation
    122442371 (RXRA)
  09162 Cancer: specific types
   05226 Gastric cancer
    122442371 (RXRA)
   05216 Thyroid cancer
    122442371 (RXRA)
   05222 Small cell lung cancer
    122442371 (RXRA)
   05223 Non-small cell lung cancer
    122442371 (RXRA)
  09172 Infectious disease: viral
   05160 Hepatitis C
    122442371 (RXRA)
  09166 Cardiovascular disease
   05417 Lipid and atherosclerosis
    122442371 (RXRA)
  09167 Endocrine and metabolic disease
   04932 Non-alcoholic fatty liver disease
    122442371 (RXRA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:ccad03000]
    122442371 (RXRA)
  09183 Protein families: signaling and cellular processes
   03310 Nuclear receptors [BR:ccad03310]
    122442371 (RXRA)
Transcription factors [BR:ccad03000]
 Eukaryotic type
  Zinc finger
   Cys4 hepatocyte nuclear factor 4-like
    122442371 (RXRA)
Nuclear receptors [BR:ccad03310]
 2. Hepatocyte nuclear factor 4 like
  2B. Retinoid X receptor (RXR)
   122442371 (RXRA)
SSDB
Motif
Pfam: Hormone_recep Nuc_recep-AF1 zf-C4 tRNA_bind_3
Other DBs
NCBI-GeneID: 122442371
NCBI-ProteinID: XP_043326067
LinkDB
Position
5:99914551..100006735
AA seq 483 aa
MRLHLLASLSGGGLAWRAGDRRWLADFSTQVNSSSLSSPAARSSMAAPSLHPSLGPSIGS
SLGSPGQLHSPISTLSSPINGMGPPFSVISSPMGPHSMSVPTTPTLGFGTGSPQLSSPMN
PVSSSEDIKPPLGLNGVLKVPAHPSGNMASFTKHICAICGDRSSGKHYGVYSCEGCKGFF
KRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRGKDRGEGE
VESTSSANEDMPVEKILEAELAVEPKTETYVEASVGLNPSSPNDPVTNICQAADKQLFTL
VEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHS
AGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYAS
LEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEAPH
QMT
NT seq 1452 nt   +upstreamnt  +downstreamnt
atgaggctgcacctgctggcctctctttcgggaggtggcctggcctggcgggcgggggac
cgtaggtggctggcagacttctccacgcaggtgaactcctcctccctcagctcacccgcg
gcgcgcagctccatggccgccccctcgctgcacccctccctggggcccagcatcggctcc
tcgctcggctccccgggacagctgcactcacccatcagcaccctcagctcgcccatcaac
ggcatgggcccgcccttctcggtcatcagctcccccatggggccgcactccatgtcggtg
cccaccacacccaccctgggctttggcaccggcagcccccagctcagctcgcccatgaac
cccgtcagcagcagcgaagacatcaagcccccgctgggcctcaatggtgtcctcaaagtg
ccggcccacccctcagggaacatggcgtccttcaccaagcacatctgtgccatctgtggg
gaccgctcctcaggcaagcactacggggtgtacagctgcgagggctgcaagggcttcttc
aagcggacggtgcgcaaggacctgacgtacacctgtcgcgacaacaaggactgcctgatc
gacaagcggcagcggaatcgctgccagtactgccgctaccagaagtgcctggccatgggc
atgaagcgcgaagccgtgcaggaggagaggcaacgcggcaaggaccggggagagggcgag
gtggagtcgaccagcagcgccaacgaggacatgcccgtggagaagatcctggaggccgag
ctggccgttgagcccaagaccgagacctacgtggaggccagcgtggggctgaaccccagc
tcgcccaacgaccctgtcaccaacatctgccaagcggctgacaagcagctcttcacgctg
gtggagtgggccaagcggatcccgcacttttccgagctgcccctggacgaccaggtcatc
ctgctgcgggcaggctggaacgagctgctcatcgcctccttctcgcaccgctccatcgcc
gtgaaggacggcatcctcctggccaccgggctgcacgtgcaccgcaacagcgcccacagc
gcgggcgtgggcgccatcttcgacagggtgctgacggagctggtgtccaagatgcgggac
atgcagatggacaagacggagctgggctgcctgcgcgccatcgtcctcttcaaccccgac
tccaaggggctctcaaacccagccgaggtggaggcgcttcgcgagaaggtctacgcgtcc
ctggaggcgtactgcaaacacaagtaccctgagcagccaggaaggttcgccaagctgctg
ctgcgcctgcccgccctgcgctccatcggcctcaagtgcctggagcacctcttcttcttc
aagctcatcggggacacgcccatcgacaccttcctcatggagatgctggaggccccgcac
cagatgacttag

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