Cervus canadensis (wapiti): 122442949
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Entry
122442949 CDS
T07554
Symbol
YTHDC2
Name
(RefSeq) 3'-5' RNA helicase YTHDC2
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
ccad
Cervus canadensis (wapiti)
Brite
KEGG Orthology (KO) [BR:
ccad00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ccad03041
]
122442949 (YTHDC2)
Enzymes [BR:
ccad01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
122442949 (YTHDC2)
Spliceosome [BR:
ccad03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
122442949 (YTHDC2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YTH
HA2_C
Helicase_C
OB_NTP_bind
R3H
DEAD
HA2_N
Ank_2
AAA_19
nSTAND3
AAA_22
Ank
ATPase
PhoH
AAA_16
AAA_7
UvrD-helicase
AAA_29
T2SSE
ABC_tran
SRP54
AAA_23
Motif
Other DBs
NCBI-GeneID:
122442949
NCBI-ProteinID:
XP_043326564
LinkDB
All DBs
Position
6:1980736..2045431
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AA seq
1429 aa
AA seq
DB search
MSRPSSVSPRPPAPGGGGGGPAPCGPGGGGRAKGLKDIRIDEEVKIAVNIALERFRYGDQ
REMEFPSSLTSTERAFIHRLSQSLGLVSKSKGKGANRYLTVKKKDGSETAHAMMTCNLTH
NTKHAVRSLIQRFPVTNKERTELLPKTERGNVFAVEAENREMSKTSGRLNNGIPQIPVKR
GESEFDSFRQSLPVFEKQEEIVKIIKENKVVLIVGETGSGKTTQIPQFLLDDCFKNGIPC
RIFCTQPRRLAAIAVAERVAAERRERIGQTIGYQIRLESRVSPKTLLTFCTNGVLLRTLM
AGDSTLSTVTHVIVDEVHERDRFSDFLLTKLRDLLQKHPTLKLILSSAALDVNLFIRYFG
SCPVIYIQGRPFEVKEMFLEDILRTTGYTNKEMLKYKKEKQREEKQQTTLTEWYSAQENT
FKPESQRQRAIPNVTEEYDLLDDGGDAVFSQLTEKDVNCLEPWLIKEMDACLSDIWLHKD
VDAFAQVFHLILTENVSVDYRHSETSATALMVAAGRGFSSQVEQLISMGANVHSKASNGW
MALDWAKHFGQTEIVDLLESYSASLEFGNLDESSLVQTNGSDLSAEDRELLKAYHHSFDD
EKVDLDLIMHLLYNICHSCEAGAILIFLPGYDEIVGLRDRILFDDKRFADNAHRYQVFML
HSNMQTSDQKKVLKNPPAGVRKIILSTNIAETSITVNDVVFVIDSGKVKEKSFDALNFVT
MLKMVWISKASAIQRKGRAGRCRPGICFRLFSRLRFQNMLEFQTPELLRMPLQELCLHTK
LLAPVNCAIADFLMKAPEPPPALIVRNAVQMLKTIDAMDAWEDLTELGYHLADLPVEPHL
GKMVLCAVVLKCLDPILTIACTLAYRDPFVLPTQASQKRAAMLCRKRFTAGTFSDHMALL
RAFQAWQKARSDGWERAFCEKNFLSQATMEIIIGMRTQLLGQLRASGFVRARGGGDIRDV
NTNSENWAVVKAALVAGMYPHLVHVDRENIVLAGPKEKKVRFHPTSVLSQPQYKKIPPAN
GQTAAVQALPTDWLIYDEMTRAHRTANVRCCSAVTPVTVLVFCGPARLASSALQEPSSFR
ADGIPNDSSDSEMEDRTTANLATLKLDEWLSFKLEPEAASLLLQLRQKWHSLFLRRMRAP
SKPWSQVDEATIRAIIAVLSTEEQSAGLQQPSGIGQRPRPMSSEELPLASSWRSNNSRKS
SADTEFSDESTTAERVLMKSPAPALHQPQKYKDRGILHPKRSTEDRSDQSSVKSTDSSNY
PSPCASPSPPSSGKGSKSPSPKPNMPIRYFIMKSSNLRNLEISQQKGIWSTTPSNERKLN
RAFWESSVVYLVFSVQGSGHFQGFSRMSSEIGREKSQDWGSAGLGGVFKVEWIRKESLPF
QFAHHLLNPWNDNKKVQISRDGQELEPQVGEQLLQLWERLPLGEKTTTD
NT seq
4290 nt
NT seq
+upstream
nt +downstream
nt
atgtctaggccgagcagcgtctccccgcggccgccggctcccggtgggggcgggggcggc
cccgcgccctgtggccctgggggcggcggccgtgccaaggggctgaaggacattcgtata
gacgaggaggtgaagattgcagtcaatatcgctctggagcgcttccgctatggggaccag
agagaaatggaattcccttcttctttgaccagtacagaaagagcctttattcatcgattg
agtcagtctcttggtttggtttctaaaagtaaaggaaagggagcaaatagatacctaact
gtgaagaagaaagatggatcagaaacagctcatgcaatgatgacctgtaatttgactcat
aatacaaaacatgctgttaggagcctaattcagagatttcctgtcaccaataaagagcgt
actgaacttctgcctaaaacagaaagaggaaatgtgtttgctgttgaagctgaaaatcgg
gaaatgagcaagacaagtgggcgactcaacaatggcatacctcagattccagtaaaaaga
ggagaatctgaatttgattctttcagacaatctctgccagtgtttgaaaaacaagaggaa
attgttaaaataattaaggaaaataaagtagttttgattgtcggagaaactggatctgga
aagactacacagattcctcagttccttttagatgattgctttaaaaatggtattccctgc
cgtatattttgtactcaaccaagacgattagcagctattgctgtggctgaaagagttgct
gcagagaggagagaaaggattggtcaaacaattgggtatcagattcgtttagaaagcagg
gtttctccaaagacacttctgacattttgcaccaatggggtactgcttcgtacactgatg
gcaggagatagtacattgtcaactgtgacgcatgttattgtggatgaagtacatgaaagg
gatcgatttagtgattttttacttacaaagttaagagatttactgcagaagcacccaact
ttgaaactaattctttctagtgctgccttagatgtaaatctttttattagatattttggg
agctgtccagtgatatatatacagggaagaccatttgaagtaaaagaaatgtttttggaa
gacattttaagaactactggatatacaaacaaagaaatgttaaaatacaaaaaggaaaaa
cagcgagaggaaaaacaacaaaccacacttacagaatggtactcagctcaagagaatact
ttcaagcctgaatctcagagacagagagctatcccaaatgtgactgaagagtatgattta
ttggatgatggtggtgacgctgtcttcagtcagctgacagaaaaagatgtgaattgcctt
gaaccatggttaataaaggaaatggatgcttgtctttctgacatatggctgcataaagat
gttgatgcctttgctcaggtctttcaccttattttaactgaaaatgttagtgttgattat
agacacagtgaaaccagtgcaacagctctgatggttgctgcaggacgaggtttctcaagt
caagtagaacagttaattagcatgggagccaatgttcacagtaaagcatcaaatggctgg
atggctttagattgggctaaacactttggtcagactgaaattgtggatcttctagaatct
tacagtgcttctttggaatttggaaatctggatgaaagctctttggttcaaacaaatggg
agtgatctcagtgcagaagacagagagcttctgaaagcttatcaccatagttttgatgat
gaaaaagtagacttggatttgattatgcatcttctatacaatatctgccatagttgtgaa
gctggtgcaatactgatttttctacctggatatgatgaaattgttggtctgagggatcgc
atcctgtttgatgacaagcggtttgctgataatgcacatagatatcaagtctttatgctt
cattcaaatatgcaaacatctgatcaaaagaaggtattaaaaaacccacctgcaggtgtt
cgaaaaataatcctttctaccaatattgctgaaaccagcatcacagtcaatgatgttgtc
tttgttattgattctggtaaggtgaaagagaaatcctttgatgcactgaattttgttaca
atgttaaaaatggtatggatttccaaagctagcgccatacaacgaaaaggcagggcaggg
cgatgcagacctggaatttgtttccggctgttcagtagacttcgattccagaatatgttg
gaatttcagactccagagcttttgaggatgccattacaggaactgtgtttacatacaaag
cttttagccccagttaattgtgctattgctgatttccttatgaaagctcctgaacctcca
ccagctttaattgtaagaaatgctgtacaaatgcttaagacaatagatgcaatggatgca
tgggaagatctcactgaacttgggtatcatttggctgacttgccagtagagccacatctt
ggtaaaatggtcctgtgtgctgttgttttgaagtgtctggatcccatccttacaattgcc
tgcacactagcttatcgagatccttttgtcctgccaactcaggcctctcagaaacgtgca
gctatgctttgtaggaaacgtttcactgcaggaaccttcagtgaccacatggcacttctc
agagcattccaggcatggcagaaagctcgaagtgatgggtgggaacgagccttttgtgag
aagaattttctttcacaggctaccatggaaataatcattggcatgagaactcagttgctt
ggtcagcttagagcgtcaggttttgtgagagcaagaggtggtggtgacattcgagatgtt
aacacaaattctgagaattgggctgttgttaaagctgcattggttgcaggcatgtatcct
cacttagttcatgtggacagagagaatatagtattggcagggccaaaggagaaaaaagta
cggtttcatcccacttcagttctcagtcagcctcaatataaaaagattcctccagctaat
ggtcaaactgcggcagtccaggcactgcccacagattggctcatttacgatgagatgacc
agagcccacagaacagccaacgtcagatgctgctcagcagtgacgcccgtcactgtgctg
gtgttctgtgggccggcgaggctggcgagcagcgctcttcaggaaccttcatctttccgt
gctgatggtattcctaatgacagtagcgatagtgagatggaagacaggactactgctaat
ttggcaactttaaaacttgatgagtggctcagtttcaaactagagccagaggcagccagt
ttattgctgcaacttagacagaagtggcacagcttatttttacgtcgaatgagagctcca
tccaaaccttggtctcaagttgatgaagctactataagagcaattatagctgttttaagc
actgaagaacagtctgcaggcttacaacagccatctgggattggccaaaggccaagacct
atgtcttcagaagaacttcctttggcatcatcttggaggtcaaataatagtaggaaaagt
tcagcagatactgaattttctgatgagtctactactgcagaaagagtactgatgaaatct
ccagctccagcactacaccaacctcagaagtataaagatagaggaattttgcatcctaaa
cgaagcactgaggaccggtcagatcaatcttctgtgaaatctacagacagcagtaattat
ccaagcccttgtgctagtccttctcctccatcctcaggaaagggctcaaaatctccttca
ccaaaaccaaacatgcctattcgatacttcataatgaagagtagcaatctgagaaacctt
gaaatttctcaacagaagggtatctggtccacaactcctagtaatgagcggaagctaaat
cgagccttttgggaaagcagcgtggtttacttggtattttctgttcaaggatctggacat
ttccagggattttctagaatgtcttctgagataggaagagagaagagtcaggattggggc
tcagctggactaggaggagtgtttaaggtggagtggatacggaaagaaagtcttccgttt
cagtttgcacaccatttactcaatccttggaatgacaacaagaaagtccagataagcaga
gatgggcaggaactagaacctcaggttggtgaacagttgctccagttatgggaacgcctt
ccgctgggagaaaaaaccacaactgattaa
DBGET
integrated database retrieval system