Cervus canadensis (wapiti): 122443532
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Entry
122443532 CDS
T07554
Symbol
RORA
Name
(RefSeq) nuclear receptor ROR-alpha isoform X1
KO
K08532
RAR-related orphan receptor alpha
Organism
ccad
Cervus canadensis (wapiti)
Pathway
ccad04659
Th17 cell differentiation
ccad04710
Circadian rhythm
ccad05017
Spinocerebellar ataxia
ccad05321
Inflammatory bowel disease
Brite
KEGG Orthology (KO) [BR:
ccad00001
]
09150 Organismal Systems
09151 Immune system
04659 Th17 cell differentiation
122443532 (RORA)
09159 Environmental adaptation
04710 Circadian rhythm
122443532 (RORA)
09160 Human Diseases
09163 Immune disease
05321 Inflammatory bowel disease
122443532 (RORA)
09164 Neurodegenerative disease
05017 Spinocerebellar ataxia
122443532 (RORA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ccad03000
]
122443532 (RORA)
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
ccad03310
]
122443532 (RORA)
Transcription factors [BR:
ccad03000
]
Eukaryotic type
Zinc finger
Cys4 thyroid hormone receptor-like
122443532 (RORA)
Nuclear receptors [BR:
ccad03310
]
1. Thyroid hormone like
1F. RAR-related orphan receptor
122443532 (RORA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C4
Hormone_recep
Motif
Other DBs
NCBI-GeneID:
122443532
NCBI-ProteinID:
XP_043327720
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Position
6:45333995..46113809
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AA seq
543 aa
AA seq
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MSAGHMEPLMARDGSRRAGSCCSCCCGSGGGGAAAAEGAPGSDHPLSLRSPHRGLNDVFC
DRSDERRKIGGESESVDTSLKGLALAQIEIIPCKICGDKSSGIHYGVITCEGCKGFFRRS
QQSNATYSCPRQKNCLIDRTSRNRCQHCRLQKCLAVGMSRDAVKFGRMSKKQRDSLYAEV
QKHRMQQQQRDHQQQPGEAEPLTPTYNISANGLTELHDDLSNYIDGHTPEGSKADSAVSS
FYLDIQPSPDQSGLDINGIKPEPICDYTPASGFFPYCSFTNGETSPTVSMAELEHLAQNI
SKSHLETCQYLREELQQITWQTFLQEEIENYQNKQREVMWQLCAIKITEAIQYVVEFAKR
IDGFMELCQNDQIVLLKAGSLEVVFIRMCRAFDSQNNTVYFDGKYASPDVFKSLGCEDFI
SFVFEFGKSLCSMHLTEDEIALFSAFVLMSADRSWLQEKVKIEKLQQKIQLALQHVLQKN
HREDGILTKLICKVSTLRALCGRHTEKLMAFKAIYPDIVRLHFPPLYKELFTSEFEPAMQ
IDG
NT seq
1632 nt
NT seq
+upstream
nt +downstream
nt
atgtcagccggtcacatggagcctcttatggctcgggatggctctcggcgggcgggcagc
tgctgcagctgctgctgtggctcgggcggcggcggcgcggcggcggcagagggggctccg
gggtcggaccatccgctctccctgcgctctcctcaccgcggcttaaatgatgtattttgt
gatcgcagcgatgaaaggaggaagataggaggagaaagtgaatcagttgatacttcgcta
aagggtctggctttagctcaaattgaaattattccatgcaagatctgtggagacaaatca
tcaggaatccattacggtgtcattacatgtgaaggctgcaagggctttttcaggagaagt
cagcaaagcaatgccacctactcctgtcctcgtcaaaagaactgtttgattgatcgaacc
agtagaaaccgctgccagcactgtcgattacagaaatgccttgccgtggggatgtctcga
gatgctgtaaaatttggccgcatgtcgaaaaagcagagagacagcttgtacgcggaagta
cagaaacaccggatgcagcagcagcagcgagaccaccaacagcagcctggagaagccgag
ccgctgactcccacctataacatctcggccaacgggctcacggagcttcacgatgacctc
agcaactacattgacgggcacacccccgagggcagcaaggcagactctgccgtcagcagc
ttctatctggacatacagccttccccagaccagtcaggtcttgatatcaatggaatcaaa
ccagaacccatatgtgactacacaccagcgtcaggcttcttcccctactgctctttcacc
aatggagagacttccccaactgtgtccatggcagaactagaacaccttgcacagaatata
tctaaatcacacctggaaacttgccaatacttgagagaagagctccagcagataacgtgg
cagacctttctgcaggaggagattgagaattatcaaaacaagcagcgggaggtgatgtgg
caattgtgtgccatcaaaattacagaagctatacaatatgtggtggagtttgccaaacgc
attgatggatttatggaactatgtcaaaacgatcaaattgtgcttctcaaagcaggttct
ctagaggtggtatttatcagaatgtgccgtgcctttgactctcagaacaataccgtgtac
ttcgatgggaaatatgctagccccgatgtcttcaaatccttaggttgtgaagactttatt
agctttgtatttgaatttggaaagagtttatgttctatgcacctgactgaagatgaaatt
gcattattttctgcatttgtcctgatgtcagcagatcgttcatggctgcaggaaaaggta
aaaatcgaaaagctgcaacagaaaattcagctagctcttcaacatgtcctacagaagaat
caccgagaagatggaatactaacaaagctaatatgcaaggtgtctacattaagagcctta
tgtggacggcatacagaaaagctaatggcgtttaaagcaatatacccagacattgtgcga
cttcattttcctccattatacaaggagttgttcacttcagaatttgagccagccatgcag
attgatgggtaa
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