Cervus canadensis (wapiti): 122443965 Help Entry 122443965         CDS       T07554                                  Symbol SPG11 Name (RefSeq) spatacsin isoform X1   KO K19026   spatacsin Organism ccad  Cervus canadensis (wapiti) Pathway ccad05014   Amyotrophic lateral sclerosis ccad05022   Pathways of neurodegeneration - multiple diseases Brite KEGG Orthology (KO) [BR:ccad00001]  09160 Human Diseases   09164 Neurodegenerative disease    05014 Amyotrophic lateral sclerosis     122443965 (SPG11)    05022 Pathways of neurodegeneration - multiple diseases     122443965 (SPG11)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03400 DNA repair and recombination proteins [BR:ccad03400]     122443965 (SPG11) DNA repair and recombination proteins [BR:ccad03400]  Eukaryotic type   DSBR (double strand breaks repair)    HR (homologous recombination)     Other HR factors      122443965 (SPG11) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  Spatacsin_C Motif Other DBs NCBI-GeneID:  122443965 NCBI-ProteinID:  XP_043328722 LinkDB All DBs Position 6:complement(96567943..96641011) Genome browser AA seq 2438 aa AA seqDB search MAAEERVLPVLLVPVPAEAAGRLGFRAQLHRDQAVLGSLTAAGSLHVLPLAPGGRGGGDC RLEGCFRQFVWEDSRHSGTPNDKPRLLALSENYELLIYEFNWEDGRCDATVLYSYSEETL QKLVEDQNISIFLLSLRILSFHDNTSLLFINKCVVLHVMFPERDTAIRPLSCFTLPLPAQ AVDRIIDTQLCRGILFVLSSLGWIYIFDIVDGRQIAHVDLALPQEDMCNEQQQEPAKSSS FTSLKVSQDLDVVVVVGVSNTAVALNLNLYFRQYPGHLLCEKTLQDIPIEGPQGIDEDDP VNSDYNMKLTKFSFRIDRSWKAQLSSLNETITSSEPEGPCCAPWYQDVSHPESPESGNCS ASVSDWAFIPQDVTCSPCDFPQQGPARTSDPGRVWKMMHLREQEESLELACVSVTGFTAL FTWAGERTGWTIVLWDLETQSTQCFLLGKKCVPVDSGGDRQPCLVLTESGLSLILFGLTQ EEFLNRLMIHGSASTVDSLCHLNGWGRCSIPIHALEVTEAGIENRQLDTVDFFLKSKENL LTPSSKSSVSDQFDHFASHLYLKHVEELTPALDLLCSAIRENDSETQSKHFSEQLLNLTL SFLNKQIKELFIHIEELDEHLQKGVDILTSYIDELRTFMIKFPWKLTDAIDEYDINENVP KVKESNIWETLSIEEVIANAILNNKIPEAQTFFRINSHSTQRLEELIRIGLDLVFDNLKK NNIEEASELLKNMGFNVKDQLLKICFYTTDKSIRDFLVEIFKEKNYFSEKEKRTVDFVHQ VEKFYSGHLQENMQIQSLPRYWIKEQDFSKHKSVLDPFLKYDHKDKLNKQDHRIVLNWAQ WWNQPTQESILLPRINPEGYSSYSPEALWRYLTARHDWPSIILWIGEFQTQSSHASLEQN KWPPLTVDVVDQNTCCDTYMRNEILDRLARNGIFLTSELEDFELFLARLNRVGGVMQDAL AVQNYRSKEGWDFHSHFILYCLEHSLQYLLYVYLDHYKLSPPNCPFLGKKELHEAHPWFE FLVQCRQVASNLTDPKLIFQASLANAQILIPSSQAGVSSMLLEGHTLLALAATMFAPGGV SQVVQNGENENSLKKVDPQLLKMALTSYPKLKAALFPQYTAPSVLPPDITLYHLIQSLLP FDPSRLFGWQSANTLAIGDAASQLPHFSSPDLVNKYAVVERLNFAYYLHHGRPSFAFGTF LVQELTKSKTPKQLIQKAGNEAYVLGLSCFHIPSIGAACVCFLELLGLDSLKLRVDMKVA NIILNYKCGNEDAQYNSIRESLAEKLSKLAVGERATIEELLVLLEEGIWNNLQQQEIESP TSTPNYRLSSESSSQWALVVQFCRLHNMKPSTSYLRECARANDWLQFIIHSQLHSHHPEE VKYLLQYFSPVVQDHLRLAFENLPSVSNSRMDSDQVCNMYSQELQRHKEEMTDFFQILLQ CSEVPNSWCWLLGEAVKQKAPILSVLASCLQDASAVSCLCVWIVASVEPCVAAEAVGPLQ DPVEGHIWGLEDLSVIWRTLLMRQKIRTLIRGFQLFFKDSPLLLMMEMYELCMFFKNYKE AEAKLVEFQQSLETLETAATRVPAAIPAPWLKEHVCFLLKLMLQQCSTQYELGRLLELFV GIEHLFSDGPDVKKLCVLSQILKDTSIAINRAIITSYSLENFQHECRSVLEKLETDGHFA LARRVAELAELPVDDLVIEEITQEMQTLKHIDQWSLKQARIDFWKKCHENFKKNSISSRA AASFFSAQALWAGERPAAGGPSSTEERHLLLSLAGHWLAREDPVPLEELEDLEKQIWLCR VAQHTLGGSQEEGEPRGPQQLSAGGELSFDGLASEFSFSNLAVLNTSKYLELDGLPSRDI CDNKLNWKEQASLNCLIGRLLDDGRVHEASRACRYFRFYNQDVTLVLHCRALASGEAGVD DLHPEILALLRSAELPEEEEQAGIPLRRVQSMSSLDGQSFVMPPLMDEVVTNLETLTSRC LHGKNYCRQVLCLYELAKELGCSYADVAAQDGEALLRAVLASQRPDRCKRAQAVISTQGL RPDTVAELVAEEVTRELLTPSEGTGHKQVFTPAEESQTFLQLTALCQDRTLVGMKLLEKI SSVPHGELSCTTELLILAHHCFTLTCHMEGIIRVLQAARLLTDNHLAPSEEYGLVVRLLT GIGRYNEMTYIFDLLHKKHYFEVLMRKKLDPSGTLKTALLDYIKRCRPGDSEKHNMIALC FSMCREIGENHEAAACIQLKLIESQPWEDSLKNGQQLKQLLLKALTLMLDAAESYAKDSC VRQALHCHRLTKLITLQIHFLNTGRNTMLINLSRHRLPDCIAALPRFYQASIVAEAYDFV PDWAEILYQQVILKGDFNYLEEFKQQRLLRPSIFEEISIKCKHHQPTDFVLKNLKKLLTY CEDIYLYYKLAYEHKLDVVNVLLKDPQTGCCLKDMLAG NT seq 7317 nt NT seq  +upstreamnt  +downstreamnt atggctgcggaggagcgggtgctgcccgttttgttggtgccggtccccgccgaggccgca gggcgcctggggttccgggcgcagctgcacagagaccaggcggtcctggggagtctgacg gccgcaggcagccttcacgtactccccttggcgccgggcggccgaggtgggggcgactgc cgcttggaaggctgttttcggcagtttgtatgggaggattctcgtcacagtgggacacca aacgacaagcccagactgcttgctcttagtgaaaattatgaacttctcatctatgaattt aattgggaagatggaagatgtgatgcaaccgttttgtatagctatagtgaggagacattg cagaagcttgttgaagatcaaaatatcagtattttcttattatctttgagaattctgtca tttcacgacaacacatcattattgttcatcaacaaatgtgttgtcctgcatgttatgttt cctgaaagagatactgcgattaggccactcagctgtttcacattacccttacctgcacag gcagtggacaggattattgacacgcagctctgcagaggaattctctttgttttgagtagt ttaggctggatctacatttttgacattgtggatggtagacaaatagctcatgtggattta gcacttcctcaagaagatatgtgtaatgagcagcaacaggagccagccaagagttcttca tttacttcactgaaagtgtctcaggacctggatgttgtagtggttgtgggcgtctccaat actgcagttgctcttaacttgaatttgtacttcaggcaatacccaggacacctgttatgt gaaaaaactctacaagacatccctattgaaggtccccaggggatagatgaagatgatcct gttaattctgactacaacatgaaactgaccaagttttccttccgaattgataggtcttgg aaagcccagctgtcatcactgaatgaaacaataacgagctccgagccggaaggtccctgc tgtgctccgtggtaccaggatgtttcacatccagagtcccccgaatctggtaactgcagt gccagtgtgtcagattgggccttcattccacaggatgtgacatgcagcccgtgtgatttt ccacagcaaggccctgccaggaccagtgatccaggaagagtgtggaaaatgatgcacctc agggaacaggaggagtcccttgagcttgcctgtgtgtctgtgacaggcttcactgcactg ttcacttgggcaggggaaaggacaggctggaccattgtcctgtgggacttggagacccag agcacgcaatgttttttgctgggcaaaaaatgtgttcctgtagacagtggtggagaccgg cagccgtgcctcgtcttgacagaaagtggactgtctctgattttgtttggtttgactcaa gaggaatttttaaacaggctgatgatccatggaagtgccagcactgtggactctctctgt catcttaatggttgggggcggtgttccatccccatacatgcgctagaggtaacagaggca ggtatagaaaaccgccagctggacacagtagatttctttttaaagagcaaagaaaatctt ttgactccatcctcaaaatcttctgtatctgaccagtttgatcactttgcatcccattta tatttaaaacatgtggaagagctgacaccagcgctggatttactttgctcagcaattaga gaaaatgattctgaaacccagagcaagcacttctcagaacagttacttaaccttacactg tctttccttaacaaacaaataaaggagctttttattcacattgaagagctagatgaacat ctacagaaaggagtggacattttgaccagctacattgatgaacttcgaaccttcatgatt aagtttccctggaagctaacagatgctatagatgaatatgatataaatgaaaatgtcccc aaagtaaaggagagcaatatatgggagacactcagcattgaggaagttattgccaatgcc attttaaacaacaaaataccagaggcacaaactttcttcaggattaacagtcattctact caaagacttgaggaactgattagaataggcctagatttggtctttgacaatttgaaaaaa aacaatatagaggaagcctctgagcttttgaagaatatgggctttaatgtaaaagaccag ttgctcaagatatgcttctatacaactgataaaagtatacgggactttctggttgaaatt tttaaagaaaaaaattatttttctgaaaaagagaaaaggactgtagactttgtgcatcaa gttgagaagttttattcaggacatttacaagaaaatatgcagatccagtctttacccaga tattggataaaggaacaagatttttccaagcacaagtctgttttggacccgttcctgaaa tatgatcataaagataaacttaacaagcaagatcatagaattgtgttaaattgggctcag tggtggaatcagccaacacaagaatccatccttctcccccggataaatccagaaggatat agctcgtattctcctgaagccctctggagatacctcacagcacgccatgattggcccagc attatcctgtggattggagaatttcagacccagagtagtcatgcttcacttgagcagaat aaatggccacctttgactgttgatgttgttgatcagaatacttgttgcgacacctacatg agaaatgaaattttagataggctggccaggaatggaatttttcttacatctgagttagaa gactttgaactcttccttgccagactgaaccgtgttgggggtgtgatgcaggatgccctc gctgttcaaaactataggtccaaagaaggttgggatttccactctcacttcattctctat tgtttggaacacagtctgcaatatcttctttatgtctatcttgaccattacaaacttagt cctccaaattgtccttttttgggaaaaaaagaattacatgaagctcacccttggtttgaa tttttagttcagtgtcgacaagttgccagtaatttaacagatcccaaactgatcttccag gctagccttgcaaatgctcagatcctgatccccagcagccaggccggggtcagcagcatg ctgctggaaggacataccctcctggcccttgctgcaacaatgtttgcccccgggggcgtc agccaggttgttcagaatggagaaaatgagaactctttgaagaaagtagatccccagcta ctgaagatggcattaacttcttacccaaagcttaaagctgctctgttcccacagtacacc gcccctagtgtcctgcctcccgatattacactctaccacctcattcagtcgctgttgccc tttgaccctagcagattgtttggctggcagtctgccaatacattggctataggagatgca gcgagtcagctcccacatttctctagccctgacctggttaataaatatgctgtagtagaa cgtctgaattttgcttattatttacatcatgggcggccatcatttgcatttggtactttt ctggttcaggaattaaccaagagcaagacccccaagcagctgatccagaaagcaggcaat gaagcctatgttttagggctctcctgcttccatataccttcgataggagccgcctgtgtg tgcttcttagaattgcttggtctcgacagcctcaagctcagagttgatatgaaagtggcc aatataattttgaactacaagtgcggaaatgaagatgctcagtacaactccatcagagag tctctagctgaaaaactgtctaaacttgctgtgggtgaaagggcaaccatagaagagttg cttgttctcttagaagaaggcatatggaacaaccttcagcagcaggaaatagagagcccc acgtccactcccaattacaggttatccagtgaatccagcagccagtgggcattagtggta cagttctgcaggctccacaatatgaaaccgagcacatcttaccttagagaatgtgccaga gcaaatgattggttacagtttattattcacagccagctccatagtcatcacccagaggag gtgaaatatcttctccagtatttcagccctgttgttcaggaccacttaagactggctttt gagaacttgccctcagtgtccaactccagaatggacagtgatcaagtctgcaacatgtac tcacaggaactccagagacacaaagaagagatgacagatttctttcagattctgcttcag tgttcagaggtgccaaactcctggtgctggctcctgggagaagcagtgaaacaaaaggcc ccaatccttagtgtcctggcctcatgtctccaggacgccagcgctgtctcttgcctctgt gtttggatcgtcgcctctgtggagccctgcgttgcagcggaagcagtgggaccccttcag gacccagtggagggccacatctggggcctggaggacctctctgtcatctggaggacgttg ctaatgaggcagaagatcaggactctcatcagaggtttccagcttttctttaaggattcc ccactactgttgatgatggagatgtatgaactctgtatgttcttcaagaattataaggag gctgaagctaaacttgtggagttccagcagagccttgaaactcttgagacagcagccaca agggtccccgctgccatccctgccccatggctgaaggagcacgtgtgttttcttttgaag ctcatgctgcagcagtgtagcacccagtatgagctggggaggctattagagctgtttgtt ggaatagaacatctcttctctgatggtccagatgtgaagaagctgtgtgtcctaagtcag attttgaaggatacctccatagccattaatcgtgcaattattactagctacagccttgag aattttcagcatgaatgtaggtcagttttggaaaaactggagacagacggacactttgct ttggccaggagggtagcagaactagctgagctacctgtggacgacttggtaattgaagag attacacaggaaatgcagaccttaaagcacattgaccagtggtccctgaaacaagcacga attgacttctggaaaaaatgtcatgagaattttaagaaaaattccatttccagcagagca gcagcttcttttttctcagcccaggccctgtgggcaggcgagcgccccgctgcagggggc cccagcagcaccgaggagcgccacctgctgctctcgctggcagggcactggctcgcccgg gaggacccggtgcctctggaggagctggaggacctggagaagcagatctggctctgtcgt gtcgcccagcacaccctcggggggagccaggaggaaggagagcccagagggcctcagcag ctctcagctggaggcgaactttcctttgatggcttagccagtgagttttcattctctaac ttggctgttctgaacacatcaaaatacttagaacttgatggccttccgtccagagacatt tgtgacaataaactgaactggaaggagcaggcgtccctaaactgtttgatcgggcgcctg ctggatgacggccgtgtgcacgaagcaagccgagcgtgccggtattttcgtttctataac caagatgtcaccttggtgttgcactgccgagcgctggcttcgggggaggctggtgtggac gacctgcacccagagatcctcgcgctcttacgaagtgctgagcttcctgaggaggaagag caggctggcatccccctgaggagagtccagagcatgtccagtctggacggtcagtcgttt gtgatgccgcccctcatggatgaagtggtgacgaacctggaaactctgacaagcaggtgc ctccacgggaagaactactgccggcaggtcctctgcctctacgagctcgccaaggagttg ggctgttcctacgcagatgtcgctgcccaggatggtgaggccctgctccgggctgtcttg gcctctcagcggcctgatcgatgcaagcgagctcaagccgtcatcagcacccagggcctc aggccagacacagtggctgagcttgtggctgaagaggtgacccgggagctgctgacgccg tcggagggaacaggacacaagcaggtgtttaccccagcagaggaaagccagacatttctt cagctgaccgctttgtgtcaagaccgcaccttggtgggcatgaagttgttggagaagatt tcctctgttccccacggggagctgtcttgcaccacagagctgctgatcctggctcatcac tgcttcacgctgacatgccacatggagggcatcatccgcgtcctgcaggccgcccggctg ctcaccgacaaccacttggcccccagtgaggagtacgggctggtggtgcgtctcctcact ggcatcggaaggtacaatgagatgacgtacatatttgatttgctgcataaaaagcactac tttgaagtgctcatgaggaagaagctggaccctagtggcaccctgaagacagccctgctg gactacatcaagcgctgccgccctggggacagcgagaagcacaacatgatcgcgctgtgt ttcagcatgtgccgggagatcggcgaaaaccacgaggcagctgcctgcatccaactgaaa ctgatcgagtctcagccctgggaggacagcctcaagaacgggcagcagctgaagcagctg ctgctgaaggccctgactctgatgctggacgcagcagagagttacgccaaggactcctgc gtgcgccaggccctgcactgccaccggctcaccaagctgatcacgctgcagattcacttt ctgaacactggccggaacacgatgctcatcaacctgagccgccacaggctgccggactgc atcgcggccctgcctcggttctaccaggcttctattgtggcagaggcctatgactttgtt cctgattgggctgaaattctgtatcaacaagtgattcttaaaggagactttaattacttg gaagaatttaagcagcaaaggttattaagacccagtatatttgaagagatttcaataaaa tgtaaacatcatcagcctacagactttgttctgaaaaacctgaagaagttactcacttat tgtgaagacatctacttgtattacaagctggcatacgaacacaaacttgatgttgtcaat gtgcttctgaaggaccctcagaccggttgctgtctaaaggacatgctagcaggttag

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