Cervus canadensis (wapiti): 122445243
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Entry
122445243 CDS
T07554
Symbol
XRN1
Name
(RefSeq) 5'-3' exoribonuclease 1 isoform X1
KO
K12618
5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
ccad
Cervus canadensis (wapiti)
Pathway
ccad03008
Ribosome biogenesis in eukaryotes
ccad03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccad00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
122445243 (XRN1)
09123 Folding, sorting and degradation
03018 RNA degradation
122445243 (XRN1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccad03019
]
122445243 (XRN1)
03009 Ribosome biogenesis [BR:
ccad03009
]
122445243 (XRN1)
03016 Transfer RNA biogenesis [BR:
ccad03016
]
122445243 (XRN1)
03036 Chromosome and associated proteins [BR:
ccad03036
]
122445243 (XRN1)
Messenger RNA biogenesis [BR:
ccad03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
122445243 (XRN1)
mRNA degradation factors
5'-3' decay
5' exonucleases
122445243 (XRN1)
Ribosome biogenesis [BR:
ccad03009
]
Eukaryotic type
Pre-60S particles
RNases
122445243 (XRN1)
Transfer RNA biogenesis [BR:
ccad03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
122445243 (XRN1)
Chromosome and associated proteins [BR:
ccad03036
]
Eukaryotic type
Gene silencing
piRNA pathway
122445243 (XRN1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_N
XRN_M
XRN1_D2_D3
XRN1_D1
SH3_12
Dicer_dimer
Motif
Other DBs
NCBI-GeneID:
122445243
NCBI-ProteinID:
XP_043330144
LinkDB
All DBs
Position
7:4357182..4467152
Genome browser
AA seq
1740 aa
AA seq
DB search
MGVPKFYRWISERYPCLSEVVKEHQIPEFDNLYLDMNGIIHQCSHPNDDDVHFRISDDKI
FTDIFHYLEVLFRIIKPRKVFFMAVDGVAPRAKMNQQRGRRFRSAKEAEDKIKKAIEKGE
TLPAEARFDSNCITPGTEFMARLHEHLKYFVNMKISTDKSWQGVTIYFSGHETPGEGEHK
IMEFIRSEKAKPDHDPNTRHCLYGLDADLIMLGLTSHEAHFSLLREEVRFGGKKTQRVCA
PEETTFHLLHLSLMREYIDYEFSALKDKITFKYDIERIIDDWILMGFLVGNDFIPHLPHL
HINHDALPLLYGTYITILPELGGYINESGHLNLPRFEKYLVKLSDFDREHFSEVFVDLKW
FESKVGNKYLNEAAGVAAEEAKNFKEKKKSKGQENSICWAALDKNGEEVVTSKDNLEEEM
EDDDLFETEFRQYKRTYYMTKMGVDVVSDDFLADQAACYVQAIQWILHYYYHGVQSWSWF
YPYHYAPFLSDIRNISTLKIHFELGKPFKPFEQLLAVLPAASKNLLPACYQHLMTSDDSP
IIEYYPPDFKTDLNGKQQEWEAVVLIPFIDEKRLLEAMETCNHSLKKEERKRNQHSECLM
CWFDSNTEFTYPSPWPEKFPPVERCCARYKIISLDAWRIDISKNKITKVDQKALYFCGFP
TLKHIKHKFFLKKSGVQVFQQSSRGENMMLEILVNAESDELSVENIASSVLGKSVFVNWP
HLEEARVVGVSDGETKFYLEEPPGTQKLYLGRTAPPSKVVHLGDKEQCNWTKEVQGISEY
YLRRKGIIINETSAVVYGQLLTGRKYQINQNGEVRLEKQWSKQVLPFVYQTVVKDIRAFD
SRFSSIKTLDDLFPPRSMVFMLGTPYYGCAGEVQDSGDVITEGRIRVVFSIPCEPNLDAL
IQNQHKYSIKYNPGYVLASRLGVSGYLVSRFTGSIFIGRGSRRNPHGDHKANVGLNLKFN
KKNEEVPGYTKKVGNEWMYSSAAEQLLAEYLERAPELFSYIAKNSQEDVFYEDDIWPGEN
ENGAEKVQEIITWLKGHPVSTLSRSSCDLQILDAAIVEKIEEEIEKCKQRKNNKKVRVTV
KPHLLYRPLEQQHGVIPDRDAEFRLFDRVVNVRENFSVPVGLRGTIIGIKGANREADVLF
EVLFDEEFPGGLTIRCSPGRGYRLPTSALVNLSHGSRSETGNQKLTAIVKPQPAVNHYSS
NSSVSSGHLRGLNHSPQSLFVPTQVPARDDDEFCNIWQSLQGSGKVQHFQPLLQEKGAVL
PQEISQVTQHHKTGFNDNSVKQRKHEPHRKFKEECKSPKTESRSQKMSNRQTFGGPAKCN
IKLLKRNESSEVSENQKVVTGHPSAVDKPNPGIENFLASLNISKESEIQSSHHEEPPSEE
QLSPQSFAMKGTRMLKEILKIDSSDSMDRKSEMKQFGNDVTVSSSRRDEYGSSSQPKQNK
KLTSYMNKPHSASEYHSVQSMDSVCWPTGQIPPVSTPVTELSRICSLVGMPQPDFSFLRT
PQTMTVCQVKLSNGLLVHGPQCHSENEAKEKAALFAIQQLGSLGVNFPLPPRIFPSYPPA
VPPGTIPPVFPQPTGWDHYGSNLALGAANIMPSSSHLFGSVPWGPPMPVPGKPFHHTPYA
GTMPMAGGMPAGVHNQFIPLQVTKKRVANKKNFENKEAQSYQVTPLHTSQSASSDVTKGI
PQETSSASLPSSQIPQPASSFQVAAASPGHSMPHQKSAPSSSRRKSRKLAVNFGVSKPSE
NT seq
5223 nt
NT seq
+upstream
nt +downstream
nt
atgggagtccccaagttttaccgatggatctcggagcgatatccctgcctcagcgaagtg
gtgaaggagcatcagattcctgaatttgataacttatacctggatatgaatggaattata
catcagtgttcccatcctaatgatgatgatgttcacttcagaatttcagatgataaaatc
ttcactgatatttttcactacttggaggtgttgttccgcattattaagcccaggaaagta
ttcttcatggctgttgatggtgtggctcctcgagcaaagatgaaccaacagcgtgggagg
cgttttaggtcagcaaaggaggctgaagacaaaattaaaaaggcaatagaaaaaggagaa
actcttcctgcagaggccagatttgattccaactgcattacaccagggactgaattcatg
gccaggttacatgaacatctgaagtactttgtaaatatgaaaatttctacagacaaatcg
tggcaaggagttaccatctacttctcaggccatgagactcctggagaaggagagcataaa
atcatggagtttatcagatccgagaaggcaaagccagatcatgatccaaacaccaggcac
tgtctttatggtttagatgctgacttgattatgcttggattaacaagtcatgaggcacat
ttctctcttttaagagaagaagttcgatttggtggcaaaaagactcaaagggtatgcgca
ccagaagaaaccacatttcacctcctacacttgtctttaatgagagagtatattgactat
gagttttcagcattaaaagacaagatcacatttaaatatgatattgaaaggataatagat
gattggattttgatgggatttcttgttggcaatgattttatccctcatctacctcattta
catattaatcatgatgcactgcctcttctttatggaacatatattaccatcctgccagaa
cttgggggttatattaatgaaagtgggcatctcaacttacctcgatttgagaaatacctt
gtgaaactatcagattttgatcgagaacacttcagtgaagtttttgtggacctcaagtgg
tttgaaagcaaagttggtaacaagtacctcaatgaagcagcaggtgttgcagcagaagaa
gccaagaacttcaaggaaaagaaaaaatcaaagggccaggaaaattccatatgttgggct
gctttagacaaaaatggagaagaagtggtaacttctaaggataatttagaagaagagatg
gaagatgatgacctatttgaaaccgagtttaggcaatataaaagaacatattacatgaca
aagatgggagttgacgtagtttctgatgactttctggctgatcaagctgcatgttatgtt
caggcgatacagtggattttgcattattactatcatggcgttcagtcctggagctggttt
tatccgtaccattatgcacctttcctgtctgatatccgcaatatcagtacactcaaaatc
cattttgaactgggaaaaccttttaagccatttgaacagcttcttgctgtacttccagca
gctagcaaaaatttactccctgcatgctaccagcatttgatgaccagtgacgactcgcca
attatagaatattatccacctgattttaaaactgacctaaatgggaaacaacaggaatgg
gaagctgtggtactaataccttttattgatgagaagcgattgttagaagccatggagaca
tgtaaccactccctcaaaaaagaagagagaaaaagaaatcaacatagtgagtgcctaatg
tgctggtttgacagcaacacagagttcacctacccctctccatggccagaaaagtttcct
cctgtagagcgatgctgtgcaaggtataaaataatatcattagatgcttggcgtatagat
ataagcaagaacaaaataaccaaggttgaccagaaggcattatatttctgtggatttcct
actttgaaacacattaaacacaaattttttttgaagaaaagtggggttcaagtattccag
caaagcagtcgtggagaaaacatgatgttggaaatcttagtgaatgctgagtcagatgag
cttagtgtagaaaatatagcttcgtcagtgcttgggaagtctgtctttgttaattggcct
catcttgaagaagctagagttgttggtgtatcagatggagaaactaagttttacttggaa
gaacctccaggaacacagaagctttatttgggaagaactgcaccaccgtctaaagtggtc
catctcggagacaaagaacaatgtaattggacaaaagaagtacaaggaatttcagaatac
tacctgagaagaaaaggaataataataaatgaaacatctgcagttgtatatggtcagtta
ctcacaggtcgtaaatatcaaataaatcaaaatggagaagtccgtctagagaaacagtgg
tcaaaacaagttcttccatttgtttatcaaaccgttgtcaaagacatccgagcttttgac
tcccgtttctccagtataaaaacattggatgacttgtttcctcctagaagtatggtcttt
atgctgggaacaccctactatggatgtgctggagaggttcaggattcaggggatgtgatt
acagaaggcagaattcgtgtggttttcagcattccatgtgaacccaatcttgatgcttta
atacagaaccagcataaatattctataaagtacaacccaggatatgtgttggccagtcgc
cttggagtgagtggataccttgtttcaaggtttacaggaagtatttttattggaagagga
tctaggagaaaccctcatggagaccataaagcaaatgtgggtttgaatctcaaattcaac
aaaaaaaatgaggaggtacctggatatactaagaaagttggaaacgaatggatgtattca
tctgcagcagaacagcttcttgcagagtacttggagagagctccagaactattcagttat
atagccaaaaatagccaagaggatgtgttctatgaagatgacatttggcctggagaaaat
gagaatggtgctgagaaagttcaagaaattattacttggctaaagggacatcctgtcagt
actttgtctcggtcttcttgtgatttacaaattctggatgcagctattgtagagaaaatt
gaagaagaaattgaaaagtgcaagcaaagaaagaataataagaaagttcgagtgacagtg
aagccccatttgctatacagacctttagaacagcaacatggggttattcctgatcgggat
gcagaatttcgtctctttgaccgtgttgtaaatgtgagagagaacttttccgttccagtt
ggccttcggggcaccatcataggaattaaaggggctaatagagaagctgatgtactattt
gaagtattatttgatgaagaatttcctggaggcttaacaataaggtgctcacctggtaga
ggttatcgactgccaacaagtgccttggtgaacctttctcatgggagtcgctctgaaact
ggaaatcagaagttgacagccattgtgaaaccacagccagctgtgaatcactatagctca
aattcatcagtttcatctgggcatttgcgaggcctgaaccattctcctcaatcacttttt
gttcctactcaagtacctgctagagatgatgatgaattttgtaacatttggcagtcctta
caaggatccggaaaggttcaacactttcagccactgctacaagagaagggtgcagttcta
cctcaagaaataagtcaagtaactcaacatcataaaactggctttaatgacaacagcgtt
aagcagagaaaacatgagcctcacagaaaatttaaagaagagtgtaagagtcctaaaact
gagagtcggtcacaaaaaatgtcaaataggcagacatttggagggcctgccaaatgtaat
attaagctactgaagagaaatgaaagttcagaagtctcagaaaatcaaaaggttgtgact
ggtcatccaagtgctgttgataagcctaatcctggaattgagaacttcttagcatccttg
aatatctccaaagaaagtgaaatacagtcatctcatcatgaagagcctccaagtgaagaa
cagttgtcaccacagtcatttgctatgaagggaactcggatgcttaaagaaattctaaaa
attgacagctctgacagtatggaccgtaagagtgaaatgaaacagtttggtaatgacgtc
actgtttcctctagtagaagagatgagtatggatcttcctcacaacctaaacaaaataag
aaattgacatcttatatgaacaagcctcacagtgctagtgagtaccatagtgttcagtct
atggacagtgtttgctggcctactggccagattcctcctgtgtctacaccagtaactgaa
ctttctcgaatttgttcccttgttggaatgccacaaccagatttctcctttctgagaaca
ccacagacaatgacagtttgccaggtaaaattatctaacggcttactggtacatgggcca
cagtgccattctgaaaatgaagccaaggaaaaagctgcactttttgctatacaacaattg
ggctccttaggagtgaatttccctttgcctccacgaatatttccaagttatcctccagcc
gtaccacctggaaccattcctccagtttttccccaacctactggctgggatcactatgga
agcaacttagcattgggggcagctaatatcatgccttcatcatctcatctctttggctca
gtgccatggggaccaccaatgccagttcctgggaagcccttccatcatacaccgtatgct
gggaccatgcccatggctgggggaatgccagctggtgtgcacaatcagttcatacctcta
caggtaactaaaaaaagagttgcaaacaaaaagaactttgagaataaggaggcccagagt
tatcaagtcaccccgcttcacactagccagtcagcatcttctgatgtcaccaaaggaatt
ccacaggagacttcatcagcttccttaccatcctctcagatccctcaacctgcatcttct
ttccaagttgcagctgcctccccaggccatagtatgcctcaccagaagtcggcaccaagc
tcttcaagaagaaaatcaagaaaactggctgtgaattttggcgtttctaaaccttctgaa
taa
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