Cervus canadensis (wapiti): 122445436
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Entry
122445436 CDS
T07554
Symbol
COL18A1
Name
(RefSeq) collagen alpha-1(XVIII) chain isoform X1
KO
K06823
collagen type XVIII alpha
Organism
ccad
Cervus canadensis (wapiti)
Pathway
ccad04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
ccad00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
122445436 (COL18A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ccad04147
]
122445436 (COL18A1)
00535 Proteoglycans [BR:
ccad00535
]
122445436 (COL18A1)
00536 Glycosaminoglycan binding proteins [BR:
ccad00536
]
122445436 (COL18A1)
Exosome [BR:
ccad04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
122445436 (COL18A1)
Proteoglycans [BR:
ccad00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
122445436 (COL18A1)
Glycosaminoglycan binding proteins [BR:
ccad00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
122445436 (COL18A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Endostatin
Collagen
DUF959
Collagen_trimer
Fz
Laminin_G_3
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
122445436
NCBI-ProteinID:
XP_043330528
LinkDB
All DBs
Position
7:22614021..22710387
Genome browser
AA seq
1831 aa
AA seq
DB search
MGSWLLAGDGWGSGRRSGLAPPPDSRGRLLLRGAHSPMAPDPSSRRRGHYGLLLLACCLS
AAQADLLSWLWPGNSAQPTAAPASKTPGSSPVWPTEDTTTHVAPRDAPTDWWKVSASPTT
PLQRPEAGQGQSPAGPTASTASLDLKEENIAGVGAKILNVAQGIRSFVQLWDDTKDTTPA
ESSARAGTPAPTTPTDPLSTAPAKGSARAGMPPPTDTTDPLSTPGPSSTPQDSGTTLQPS
TGALSSPDTQRTEAGTLPVPTQLPPSLGRPWFRESLVLPTPGRFSLSFGPTRGPPRGHQL
PLGRPLQLDGEGFLLAAARPGHQHPDDRRPTPPLPPLVMGSLGRHTALWALSSDSPAKLS
HVAISALTVDNGAWSPHVANSAGPGLANKSTLLGAGEPAATGQPVPTTAGRCLPLPPSLA
LCGHLGIRHSWWPNHLRHASREEVQAAVPAWGALLRTHCHRFLAWFFCLLLAPPCGPGLP
PGPPPCRQFCEALEDACWSRLDGRGLPLLCASLPAREDGHCVFIGPLAEGEVMEVGLQQL
LGEPPPWQVAVVHDPDVGPAYEFGEDGSGGGQAARGFLPSAFFQDFSLLVRVRPASARAG
VLFAVTDPAQAVVSVGVKLTAARGGRQHVQLLYTEPGDTHTRTAASFELPALDGRWTRLA
LSVDGAYARLFVDCKEVQGQPLAHSLHDLHLEPDARLFVAQAGGADPEKFQGLISELRLR
RDPRVSPRHCQDEDEDDDDDGASGDLGSGLVETQEHLREELGASLGPRLPEAPPVTSPPL
AGVGNEEDLRTEEVEESTTVSSLGAQTLPSLGTVSMWDKSVWSPGSSMEERGLKGQKGEP
GAQGPPGPIGPQGPAGPAIESHEGQPVSGPQGPPGPPGPPGKDGTPGRDGEPGDPGEDGK
PGDTGPQGFPGTPGDVGPKGEKGDPGIGPRGPPGPQGPPGPPGPSFKPDRLTFIDMEGSG
FGGDLESLRGPRGFPGPPGPPGVPGLPGEPGRFGMNSSDVPGPAGLPGVPGRDGLPGLPG
PPGPPGTPGKDGQPGLTGQKGSLGEAGAPGPKGSKGDPGPIGAPGEHGLAGAPGPAGPPG
PPGPPGPPGPGFAAGFDDMEGSGNVFWSTARGADGLQGPPGTPGVKGDPGAVGPPGSKGE
VGADGAPGLPGLPGGEGAAGPQGPKGEKGTRGEKGDPGKDGVGQPGLPGPPGPPGPVVYV
SEQDRVLASVPGPEGRTGFAGFPGPAGPKGDLGAKGQQGIPGPKGEKGEPGTFFGPDGRA
LTPAQKGAKGEPGFRGPPGPYGRPGHKGEIGFPGRPGRPGMNGLKGEKGEPGDASVGFGM
RGPPGPPGPPGPPGPPGTPVYDSNAFVDSGRPGPPGLPGHQGPSGPKGDKGDVGPPGPPG
QFPFDLLQLGAEMKGEKGDRGAAGQKGERGDPGGGGFFGSSVPGPPGPPGYPGIPGPKGE
SIRGQPGPPGPQGPPGIGYEGRQGPPGPPGPPGPPGPPSFPGPYRQTISVPGPPGPPGPP
GPPGSMGTSSGGSTGLGFQQVRVWATYQMLVEQVLQVPEGWLIYVADREELYVRVRNGFR
KVLLEAHVPLPHGTDNEVAVLQPPLVQLHEGNPYPRREAPHPTARSWRADDILANPPRLP
HPQPYPGAPHHGAYAHLRPVPPTASPSHTHHDFQPVLHLVALNSPQSGGLRGIRGADFQC
FQQARAAGLAGTFRAFLSSRLQDLYSIVRRADRATLPVVNLRDEVLFPSWEALFSGSEGQ
LKPGARIFSFDGRDVLQHPAWPQKSVWHGSDPSGRRLTESYCETWRTDTRAATGQASSLL
AGRLLEQKAAGCHNAFIVLCIENSFMTSSSK
NT seq
5496 nt
NT seq
+upstream
nt +downstream
nt
atggggagctggctgctggccggggatgggtgggggagcgggaggcggagcgggctggcc
ccacctcctgacagcagaggccgcctgctgctccgaggagcacacagccccatggctccc
gaccccagcagccgccgccgcggccactacggcctcctgctgcttgcctgctgcctctcg
gccgcccaggctgacctgctgtcctggctatggcccgggaacagtgcccagcccacagct
gcaccagcctccaagaccccgggcagctcacctgtgtggcccacagaggataccaccacg
cacgtggccccccgggatgctcccaccgactggtggaaagtctctgccagccccacaacc
cctctgcagaggccggaggcagggcagggccagagccccgctggccccacggcctccacc
gcgagcttggacctgaaggaggagaacatcgccggcgtcggagccaagatcctgaacgtg
gctcagggcatccggagcttcgtccagctgtgggacgacactaaggacaccacccctgcc
gagagctctgccagggcagggacgccagcccccacgacccccacagaccccctttctacc
gccccggccaagggctccgccagggcagggatgccgccccccacggacaccacggacccc
ctctccacccctggaccctccagcaccccccaggacagcgggaccaccctccagccgagc
accggggccctgagctctccagacacccagaggaccgaggccggcaccctgccagtgccc
acccagctgccgccctccctgggcagaccctggttcagggagtccttggtactgcctacc
ccaggtagattttctctttccttcgggccgacccgggggcctccccggggacaccagctg
cccctcgggcggcccctgcagctggacggtgaaggattcttgcttgcggcagcccgtccc
ggccaccaacaccctgacgaccgccggcccacgccgcctctacctcccctggtgatgggt
tccctgggcaggcacactgccctctgggctctctcctctgactcccctgccaagctgtct
cacgttgcaatctcggctctaactgtggacaatggtgcttggtctccccacgtggctaat
tctgcggggcctggtcttgctaacaagtccacactgcttggggctggtgagccggctgcc
actgggcagcctgtccccaccaccgctggccgctgcctgcccctgccaccctccctggcc
ctctgcggccacctgggcatcaggcactcctggtggcccaaccacctccgccacgcaagt
cgggaggaggtgcaggccgcggtcccagcctggggggcgctgctccggacccattgccac
cgcttcctggcctggttcttctgcctgctgctggcgcccccctgcgggcccggcctgcca
cccggcccaccaccctgtcgccagttctgtgaggccctggaggatgcatgctggagccgc
ctggacgggcgcgggctgccactcctctgtgcctcgctcccggcccgcgaggatgggcac
tgtgtgttcatagggccactggcagagggcgaggtcatggaggtggggctccagcagctg
ctcggggagcccccgccctggcaggtggccgtcgtgcacgaccccgacgtggggcccgcc
tatgagttcggcgaggacggcagcggtggaggccaggcggcccggggcttcctgcccagc
gcgttcttccaggacttctcgctgctggtgcgtgtgcggccggcctcagcgcgcgccggc
gtactctttgcggtcacagacccggcgcaggcggtggtctcggtgggcgtgaagctgacg
gcggcgcgtggggggcggcagcacgtgcagctgctgtacacggagcccggagacacccac
acgcgcacagccgccagcttcgagctgcccgcgctggatggtcgctggacacgcctggcg
ctcagcgtggatggcgcctacgccaggctctttgtggactgtaaggaggtccagggccag
cccctggcgcactcgctgcacgacctgcacctggagccggatgcccgcctcttcgtggcc
caggcgggcggagcggatcctgaaaagttccagggtctgatctcagagctgaggttgcgc
agggatcctcgggtgagcccccggcactgccaggacgaggacgaggacgacgatgatgat
ggggcatccggagacctgggcagcgggctcgtggagacccaggagcatctccgggaggag
ttgggcgcgtccctgggacccaggctccccgaggctcctccagtcacttctccacccttg
gccggagtcggcaacgaggaggatttaagaactgaggaagtagaggagtcaaccacggtg
tcttcgttaggagctcagaccctccccagcttgggcacggtcagcatgtgggacaagagt
gtttggagccctgggagcagcatggaagagcgaggcctgaaggggcagaagggagagccc
ggcgctcagggcccccccggccccatcggcccccagggtcctgcaggcccagccatagag
agccacgagggacagcctgtttccggaccacagggaccccctgggcccccgggacccccg
gggaaggacggcacccctggaagggatggtgagcccggtgatcctggcgaagacgggaag
cccggggacactgggccacagggcttcccaggaaccccaggagacgtgggccctaagggc
gagaagggggatcctggaatcggaccgaggggacccccaggaccccaggggcccccgggg
cccccagggccctccttcaaacccgacaggctgacctttatcgacatggagggctccggt
tttggaggcgacctggagagcctccgcggccctcgcggcttccctggccccccggggccc
cctggcgtcccaggcctgccgggagagccaggccgcttcgggatgaacagctcggatgtc
cctggacccgcaggcctgcccggcgtgcctggaagggatgggctgcctgggcttccgggg
cccccgggacccccaggtactccaggaaaagacggacaaccaggactgactggacagaaa
ggcagccttggtgaggcgggcgccccaggacccaagggcagcaagggagaccctggcccc
atcggcgctcctggggagcacggcctggcaggagcccctggacccgcaggcccgccaggg
ccacctggtccccccgggcccccaggcccaggattcgccgcgggatttgacgacatggaa
ggctctgggaacgtcttctggtcaacagcccgaggtgctgacgggctgcagggaccgcct
ggaacgcccggagtcaagggggatcctggagccgtggggccaccagggagcaagggagaa
gttggagcagatggagcacctgggctccccggcctcccgggcggagagggtgcagctgga
ccccagggaccaaaaggagaaaaagggactcggggagagaaaggagacccagggaaggat
ggagtggggcagccaggactcccgggaccccccggacccccagggcctgttgtctacgtg
tcggagcaggacagagtgctggcgagtgtgccaggccccgagggccgcacgggcttcgca
ggcttccctggaccagccgggccaaagggggacctgggcgccaaaggccagcagggcatc
ccgggacccaagggtgagaagggagagccgggtacattcttcggccccgatggcagagca
ctgacccccgcccagaaaggagccaagggtgagccaggcttccgaggacccccgggtcca
tacgggcggcccgggcacaagggagagatcggattccctggacggccggggcgtcccggg
atgaatggactgaaaggggaaaagggggagccaggggacgccagcgtgggattcggaatg
aggggtccacctggcccacctgggcctccggggcccccaggccctcctgggactcctgtc
tatgacagcaacgcatttgtggactctggccgccctggacccccgggattgccagggcat
caggggccttctggacccaagggtgacaaaggagacgtgggcccgcctggaccaccaggg
cagttcccgttcgacctcctccagctgggtgctgagatgaagggggagaagggggaccga
ggggccgctgggcagaaaggagaaaggggtgaccccgggggcggaggattcttcggttcc
agtgtgcctggcccccccggcccgcccggctacccggggattccgggccccaagggagag
agcatccgtggccagcccggccctccgggacctcagggaccccctggcattggctacgag
ggacgccaggggcctcctgggccccctgggcccccagggcccccagggcccccttccttt
cctggcccctacaggcagaccatcagtgttcctggcccaccaggcccacctgggccccca
gggccccctggatccatgggcacttcttcagggggatccactgggctgggcttccagcag
gtgagggtctgggccacgtaccagatgctggtggagcaggtgctgcaagtgccggagggc
tggctcatctacgtggccgacagggaggagctgtacgtccgggtccggaatggcttccgg
aaggttctgctggaggcccatgtgcccctcccccatgggacggacaacgaggtggccgtc
ttgcagccccccctggtgcagctgcatgagggtaatccctacccccgccgggaggccccc
cacccgacagcgcggtcctggcgggcggacgacatcctggccaaccccccgcgcctgccg
cacccccagccctaccccggcgcccctcaccatggcgcctacgcacacctccggccggtg
ccccccacggcctcgccctcccacacccaccacgacttccagccggtgctgcacctggtg
gcgctcaacagcccgcagtcgggcggcctgcgaggcatccgcggcgccgacttccagtgc
ttccagcaggcacgcgctgcggggctggccggcaccttccgcgcgttcctgtcctcgcgg
ctgcaggacctgtatagcatcgtgcgccgcgcagaccgcgccactctgccagtcgtcaac
ctcagggacgaggtgctgtttcctagctgggaggccttgttctcaggctccgagggccag
ctgaagcccggcgcccgcatcttctcctttgacggcagagatgtcctccagcatcccgcc
tggccccagaagagcgtgtggcacggctcagaccccagcgggcgccggctgactgagagc
tactgcgagacgtggcggacggacaccagggcggccacgggccaggcctcctcgctgctg
gcgggccggctgctggagcagaaagccgctgggtgccacaacgccttcatcgtcctctgc
atcgagaacagcttcatgacctcctcctccaagtag
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