Cervus canadensis (wapiti): 122445912
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Entry
122445912 CDS
T07554
Symbol
POLR2A
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
ccad
Cervus canadensis (wapiti)
Pathway
ccad03020
RNA polymerase
ccad03420
Nucleotide excision repair
ccad05016
Huntington disease
Brite
KEGG Orthology (KO) [BR:
ccad00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
122445912 (POLR2A)
09124 Replication and repair
03420 Nucleotide excision repair
122445912 (POLR2A)
09160 Human Diseases
09164 Neurodegenerative disease
05016 Huntington disease
122445912 (POLR2A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccad03021
]
122445912 (POLR2A)
03400 DNA repair and recombination proteins [BR:
ccad03400
]
122445912 (POLR2A)
Enzymes [BR:
ccad01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
122445912 (POLR2A)
Transcription machinery [BR:
ccad03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
122445912 (POLR2A)
DNA repair and recombination proteins [BR:
ccad03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
122445912 (POLR2A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_R
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
122445912
NCBI-ProteinID:
XP_043331375
LinkDB
All DBs
Position
1:complement(33324037..33344136)
Genome browser
AA seq
1970 aa
AA seq
DB search
MHGGGPPSGDSACPLRTIKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDP
RQGVIERTGRCQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVD
SNNPKIKDILAKSKGQPKKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKG
HGGCGRYQPRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEECFVLGMEP
RYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAA
HVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVD
FSARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYII
RDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWS
TFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQD
TLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHI
NCIRTHSTHPDDEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEM
GHDITRLFYSNIQTVINNWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKA
HNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKIN
ISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHA
MGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGES
VEFQNLATLKPSNKAFEKKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNELEREFERMR
EDREVLRVIFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELSKKL
VIVNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAI
AHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLT
VFLLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMP
DFDVARISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIR
IMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKI
IITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALER
ELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDVLM
EAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGLGAAGPTG
MFFGSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSPG
YSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSP
SYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP
TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS
YSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPT
SPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKY
SPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTS
PKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISPDDSDEEN
NT seq
5913 nt
NT seq
+upstream
nt +downstream
nt
atgcacgggggtggccccccctccggggacagcgcatgcccgctgcgcaccatcaagaga
gtgcagttcggagtcctcagtccggatgaactgaaacgaatgtctgtgacagagggtggc
atcaaatacccggagacaaccgagggaggccgccccaagctcggggggctgatggatccg
aggcagggagtgattgagaggacgggccgctgccaaacctgtgcaggaaacatgacggag
tgtcctggccactttggccacattgagctggccaagcctgtgttccacgttggcttcctg
gtcaagacaatgaaagttttgcgctgtgtctgcttcttctgctccaagttgcttgtggac
tctaacaacccgaagatcaaggacattttggctaagtccaaggggcagcccaagaagcgg
ctcacacacgtctatgatctctgcaagggcaaaaacatctgcgagggcggggaggagatg
gacaacaagtttggtgtggagcagcctgagggcgatgaagatttaaccaaagaaaagggc
catggtggctgcggacggtaccagccccggatccggcgctctggcctggagctatatgca
gaatggaagcatgtcaatgaggactctcaagagaagaagatcctgttgagccccgagcgg
gtgcacgagatctttaagcgcatctctgacgaggagtgcttcgtcctaggcatggagccg
cgctacgcccggcccgagtggatgatcgtcactgtgctgcctgtgcccccgctctccgtg
cggcccgctgttgtgatgcagggctctgcccgcaaccaggacgacctgacccacaaactg
gccgatattgtcaagatcaacaatcagcttcggcgcaatgagcagaatggcgcagctgcc
catgtcatcgccgaggacgtgaagctcctccagttccatgtggccaccatggtggacaat
gagctgcctggcttgcctcgtgccatgcagaagtctgggcgtccactcaagtccctgaag
cagcgattgaaggggaaggaaggccgtgtgcgtgggaacctgatgggcaagcgggtggac
ttctcagcccgcactgtcatcacccccgaccccaacctctccattgaccaagtcggcgtg
ccacgctccattgccgccaacatgacctttgcggagattgtcacccccttcaacattgac
agacttcaggaactagtgcgcagggggaacagccagtacccaggagccaagtacatcatc
cgggacaacggtgatcgcattgacctgcgtttccaccccaagcccagtgaccttcacctg
cagactggctataaggtggaacggcacatgtgtgatggggacattgttatcttcaaccgg
cagccaactttgcacaaaatgtccatgatgggtcatcgggttcgcatcctgccctggtcc
acttttcgcttgaatcttagtgtgacaactccgtacaatgctgacttcgatggggatgag
atgaacttgcacctgccacagtccctggagacacgggctgagatccaggagctggccatg
gtgccacgcatgattgtcaccccccagagcaatcgtccggtcatgggcattgtgcaggac
acattgactgcagtgcgcaaattcaccaagagggatgtcttcctggagcggggggaagtg
atgaacctcctgatgttcctgtccacgtgggacgggaaggtcccccagccagccatcctg
aagccccggcccctgtggacaggaaagcagatcttctccctcatcattcccggccacatc
aactgtatccgcacccatagcacccaccccgatgatgaggacagcggcccttacaagcac
atctctcctggggacactaaggtggtggtggagaatggcgagctgatcatgggcatcctg
tgtaagaagtctttgggcacgtcagctggctctctggtccacatctcttaccttgagatg
ggtcacgacatcactcgcctcttctactccaacattcagactgtcatcaacaactggctc
ctcattgagggtcataccattggcattggggactccatcgctgattctaagacttaccaa
gacattcagaacacgattaaaaaggccaagcaggatgtaatagaggtcatcgagaaggca
cataacaatgagctggagcccacaccagggaacaccctgcggcagacgtttgagaaccag
gtgaaccgcattctcaacgatgcccgagacaagactggctcctccgcccagaaatcactg
tctgaatacaacaactttaagtctatggtcgtgtctggggccaaaggttccaagatcaac
atctcccaggtcattgctgttgtcgggcagcagaacgtggagggcaagcggatcccattt
ggattcaagcaccggaccctgcctcacttcatcaaagatgactatgggcctgagagccga
ggctttgtggagaactcctacctggccggcctcacgcccaccgagttcttcttccatgcc
atggggggccgtgaggggctgatcgacacagctgtcaagactgctgagactggatacatc
cagcggcggctgataaagtctatggagtcggtgatggtgaagtacgacgccactgtgcgc
aactccatcaatcaggtggtgcagctgcgctatggcgaggatggcctggcgggcgagagt
gtcgagttccagaacctggccaccctcaagccttccaacaaggcctttgagaagaagttc
cgctttgattacaccaatgagagggccttgcggcgcaccctgcaggaggacctggtgaag
gatgtgctgagcaacgcacacattcagaatgagctagaacgagaattcgagcggatgcgt
gaggaccgggaggtgctcagagtcatcttcccaactggcgacagcaaggttgtcctcccc
tgcaacctgctgcgcatgatctggaacgctcagaagatcttccacatcaaccctcgcctt
ccctccgacctgcaccccatcaaggtggtagagggagttaaggagttgagcaagaagctg
gtgattgtgaatggggacgaccccctgagccggcaggcccaggagaacgccaccttgctt
tttaacatccacctgcggtccacgctgtgttcccgccgcatggccgaggagttccgactc
agtggagaggcttttgactggctgcttggagagatcgagtccaagttcaaccaagccatt
gcccatccgggggaaatggtgggagctctggctgcacagtccctaggagaacctgccacc
cagatgaccttgaacaccttccactatgctggtgtgtccgccaagaacgtgactctgggt
gtgccccgacttaaggagctcatcaacatttccaagaagccaaagaccccctcacttacc
gtcttcctactgggccagtctgctcgagatgcagagagagccaaggatattctgtgccgc
ttggaacacacaacattgaggaaggtgaccgccaacacggccatctactatgaccccaac
ccccagagcacagtggtggccgaggatcaagagtgggtgaatgtctactatgagatgcct
gactttgatgtggcccgaatctccccctggcttttgcgggtggagctggaccggaagcac
atgactgaccggaagctgaccatggagcagattgccgaaaagatcaatgctggttttggt
gacgacttgaattgcatctttaatgatgataacgcagagaagctggtgctccggatccgt
atcatgaacagtgatgaaaataaaatgcaagaggaggaagaggtggtggacaagatggac
gacgatgtcttcctgcgctgcatcgagtccaacatgctgacggacatgaccctgcagggc
atagagcagatcagcaaggtgtacatgcacttgccgcagaccgacaacaagaagaagatc
atcatcacagaggacggggagttcaaggccctgcaggagtggatcctggagacggacggt
gtgagcctgatgcgcgtgctgagtgagaaggatgtagaccctgtgcgcaccacatccaac
gacatcgtggagatcttcacggtgctgggcattgaggccgtacggaaggccctggagcgg
gagctgtaccacgtcatttccttcgatggttcctacgtcaattaccggcacttggctctc
ctgtgtgacaccatgacctgtcgtggccacttgatggccatcactcgacacggagtcaac
cgccaggacactggacctctcatgaagtgctcctttgaggaaacggtggatgtgctcatg
gaagcagctgcgcacggagagagtgaccccatgaaaggggtgtccgagaacatcatgctg
ggccagctggctccggctggcaccggctgttttgacctcctgctcgatgcggagaagtgc
aagtatggcatggaaatccccaccaatatccccggcctgggggctgccggacccaccggc
atgttcttcggctcagcccccagtcccatgggaggaatttctccagccatgacaccctgg
aaccagggcgcaaccccagcctacggcgcctggtctcccagtgttgggagcgggatgacc
ccgggagcagcaggcttctctcccagtgctgcctcagatgccagcgggttcagccctggc
tactccccagcctggtctcccacaccaggctccccgggctccccaggcccctcaagccca
tatatcccctccccagggggtgccatgtctcccagctactccccgacatcgcctgcctat
gagccccgctcccctggaggctacacaccccagagtccctcttactcccccacttcccct
tcctactcccctacttctccatcctactctccaaccagccccaactacagccccacgtca
cccagctactccccgacctctcccagctactcacccacttctcccagctattcacccacc
tcacccagctactcgcccacttccccaagctactcgcccacctctcccagctactcgccc
acatcacccagctactcgccgacatcacccagctactcgcccacctctcccagctactcg
cccacctctcccagctactcacccacatcacctagctactcacccacttcacccagctac
tcaccaacatctccaagctattcaccaacatcaccaagctactctccaacttctccaagt
tactcgcccaccagtcctaactattctccaaccagtcccaattacaccccaacatcaccc
agctatagcccgacgtcaccgagctactcacctactagtcccaactacacaccaacaagc
cccaactacagcccaacctctccaagctactctccgacttcacccagctactccccaacc
tcgccaagctactctccttcaagcccacgatacacaccacagtctcccacctacacccca
agctcacctagctacagccccagctcacccagctacagcccaacttcaccaaagtacacc
ccaaccagtccttcgtatagccccagctcaccagaatacacccccacctctcccaagtac
tcacctaccagcccaaaatattcacccacctcccccaagtactcacctaccagccctacc
tactcacctaccaccccgaaatactcacccacgtcgcctacttactcaccaacctctcct
gtctacaccccaacctcccccaagtattcacccaccagccccacctactcccccacctcc
cccaagtactcacccaccagccccacctattcccccacctcccccaaaggctctacttac
tcgcccacctcccccggctactcgcccaccagccccacctacagtctcaccagtccagcc
atcagcccggatgacagtgatgaggagaactga
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integrated database retrieval system
