Cervus canadensis (wapiti): 122446478
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Entry
122446478 CDS
T07554
Symbol
TRUB1
Name
(RefSeq) probable tRNA pseudouridine synthase 1 isoform X1
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
ccad
Cervus canadensis (wapiti)
Brite
KEGG Orthology (KO) [BR:
ccad00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ccad03016
]
122446478 (TRUB1)
Enzymes [BR:
ccad01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
122446478 (TRUB1)
Transfer RNA biogenesis [BR:
ccad03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
122446478 (TRUB1)
Prokaryotic type
122446478 (TRUB1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
Pus10_C
RepB_primase_C
Motif
Other DBs
NCBI-GeneID:
122446478
NCBI-ProteinID:
XP_043332686
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All DBs
Position
8:complement(16157076..16188186)
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AA seq
351 aa
AA seq
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MAAAEAAAVVLSSSLKPDPAPVPESAGTAAATAATSSAMAAAAALAAAARTGSEATVSKP
ALATKLLSLSGVFAVHKPKGPTSAELLNRLKEKLLAEAGMPSPEWTKRKKQTLKIGHGGT
LDSAARGVLVVGIGRGTKMLTSMLSGSKRYIAIGELGKATDTLDSTGKVTEEKPYDKITQ
EDIEGILQKFTGNIMQVPPLYSALKKDGQRLSTLMKRGDVVEAKPARPVTVYSLSLQKFQ
PPFFTLDVECGGGFYIRSLVSDIGKELSSCANVLELTRTKQGPFTLEEHALPEDRWTIDD
IAQSLEQCSPLLPAELALKKSKPEESNEQVLSCEYITLNETKGEDDVIKTL
NT seq
1056 nt
NT seq
+upstream
nt +downstream
nt
atggcagctgctgaggcggcggcggtggtgttgtcgtcctctttgaaaccagacccagcc
ccagttcccgaaagtgcagggacagctgcagcaacggccgccacatcctcagcgatggct
gcagccgcggcgcttgcggccgcggccaggaccggatccgaagccacggtctccaagccc
gcgttggctactaagctgctgtcgctgagcggcgtgttcgctgtgcacaagcccaaaggg
cccacttcagccgagttgctgaatcggctgaaggagaagctgctggcagaagctggaatg
ccttctccagaatggaccaagaggaaaaagcagactttgaaaattgggcatggagggact
ctagacagtgcagcccgaggagtcctggtggttggaattggaaggggaacaaaaatgctg
accagtatgttatcagggtccaagagatatattgccattggggaactggggaaggctact
gacacgctagattctacagggaaagtaacagaagaaaaaccttatgataaaataacacaa
gaagatattgaaggcattctacagaaattcactgggaatataatgcaggtacctcccctc
tattctgcattaaagaaagatggccagagactttcaactttgatgaagagaggtgacgta
gtagaagcgaagcctgccaggccagttactgtatacagtctctcccttcagaaattccag
ccaccatttttcacactagatgtcgaatgtggaggaggtttttatatcagaagcttggtc
agtgacattggcaaagaactttcttcctgtgccaatgtgctagagctgacgcgcaccaaa
cagggacctttcaccctggaggagcatgccctgcccgaagacagatggacgattgatgac
atcgcacagtctctcgagcagtgctcacctcttctcccagcagagctggcacttaaaaaa
tcaaaacctgaggagtctaatgagcaagttttgagctgtgagtatataactctgaatgag
acaaagggagaagatgatgtaattaagacactttaa
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