Cervus canadensis (wapiti): 122447688
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Entry
122447688 CDS
T07554
Symbol
PRPF8
Name
(RefSeq) pre-mRNA-processing-splicing factor 8
KO
K12856
pre-mRNA-processing factor 8
Organism
ccad
Cervus canadensis (wapiti)
Pathway
ccad03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ccad00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122447688 (PRPF8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ccad03041
]
122447688 (PRPF8)
Spliceosome [BR:
ccad03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
122447688 (PRPF8)
Complex C
U5 SnRNP specific factors
122447688 (PRPF8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
122447688
NCBI-ProteinID:
XP_043334318
LinkDB
All DBs
Position
1:37588352..37620878
Genome browser
AA seq
2335 aa
AA seq
DB search
MAGVFPYRGPGNPVPGPLAPLPDYMSEEKLQEKARKWQQLQAKRYAEKRKFGFVDAQKED
MPPEHVRKIIRDHGDMTNRKFRHDKRVYLGALKYMPHAVLKLLENMPMPWEQIRDVPVLY
HITGAISFVNEIPWVIEPVYISQWGSMWIMMRREKRDRRHFKRMRFPPFDDEEPPLDYAD
NILDVEPLEAIQLELDPEEDAPVLDWFYDHQPLRDSRKYVNGSTYQRWQFTLPMMSTLYR
LANQLLTDLVDDNYFYLFDLKAFFTSKALNMAIPGGPKFEPLVRDINLQDEDWNEFNDIN
KIIIRQPIRTEYKIAFPYLYNNLPHHVHLTWYHTPNVVFIKTEDPDLPAFYFDPLINPIS
HRHSVKSQEPLPDDDEEFELPEFVEPFLKDTPLYTDNTANGIALLWAPRPFNLRSGRTRR
ALDIPLVKNWYREHCPAGQPVKVRVSYQKLLKYYVLNALKHRPPKAQKKRYLFRSFKATK
FFQSTKLDWVEVGLQVCRQGYNMLNLLIHRKNLNYLHLDYNFNLKPVKTLTTKERKKSRF
GNAFHLCREVLRLTKLVVDSHVQYRLGNVDAFQLADGLQYIFAHVGQLTGMYRYKYKLMR
QIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAAGWRVWLFFMRGITPLLERWLGNLLARQF
EGRHSKGVAKTVTKQRVESHFDLELRAAVMHDILDMMPEGIKQNKARTILQHLSEAWRCW
KANIPWKVPGLPTPIENMILRYVKAKADWWTNTAHYNRERIRRGATVDKTVCKKNLGRLT
RLYLKAEQERQHNYLKDGPYITAEEAVAVYTTTVHWLESRRFSPIPFPPLSYKHDTKLLI
LALERLKEAYSVKSRLNQSQREELGLIEQAYDNPHEALSRIKRHLLTQRAFKEVGIEFMD
LYSHLVPVYDVEPLEKITDAYLDQYLWYEADKRRLFPPWIKPADTEPPPLLVYKWCQGIN
NLQDVWETSEGECNVMLESRFEKMYEKIDLTLLNRLLRLIVDHNIADYMTAKNNVVINYK
DMNHTNSYGIIRGLQFASFIVQYYGLVMDLLVLGLHRASEMAGPPQMPNDFLSFQDIATE
AAHPIRLFCRYIDRIHIFFRFTADEARDLIQRYLTEHPDPNNENIVGYNNKKCWPRDARM
RLMKHDVNLGRAVFWDIKNRLPRSVTTVQWENSFVSVYSKDNPNLLFNMCGFECRILPKC
RTSYEEFTHKDGVWNLQNEVTKERTAQCFLRVDDESMQRFHNRVRQILMASGSTTFTKIV
NKWNTALIGLMTYFREAVVNTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPK
ELGGLGMLSMGHVLIPQSDLRWSKQTDVGITHFRSGMSHEEDQLIPNLYRYIQPWESEFI
DSQRVWAEYALKRQEAIAQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRVRT
DFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILEHTLFKGTYFPTWEG
LFWEKASGFEESMKWKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGI
FMHGKIPTLKISLIQIFRAHLWQKIHESIVMDLCQVFDQELDALEIETVQKETIHPRKSY
KMNSSCADILLFASYKWNVSRPSLLADSKDVMDSTTTQKYWIDIQLRWGDYDSHDIERYA
RAKFLDYTTDNMSIYPSPTGVLIAIDLAYNLHSAYGNWFPGSKPLIQQAMAKIMKANPAL
YVLRERIRKGLQLYSSEPTEPYLSSQNYGELFSNQIIWFVDDTNVYRVTIHKTFEGNLTT
KPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLAKWKTAEEVAALIRSLPVEEQPKQ
IIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACLKVEKFGDLILKATEPQMVLFNLY
DDWLKTISSYTAFSRLILILRALHVNNDRAKVILKPDKTTITEPHHIWPTLTDEEWIKVE
VQLKDLILADYGKKNNVNVASLTQSEIRDIILGMEISAPSQQRQQIAEIEKQTKEQSQLT
ATQTRTVNKHGDEIITSTTSNYETQTFSSKTEWRVRAISAANLHLRTNHIYVSSDDIKET
GYTYILPKNVLKKFICISDLRAQIAGYLYGVSPPDNPQVKEIRCIVMVPQWGTHQTVHLP
GQLPQHEYLKEMEPLGWIHTQPNESPQLSPQDVTTHAKIMADNPSWDGEKTIIITCSFTP
GSCTLTAYKLTPSGYEWGRQNTDKGNNPKGYLPSHYERVQMLLSDRFLGFFMVPAQSSWN
YNFMGVRHDPNMKYELQLANPKEFYHEVHRPSHFLNFALLQEGEVYSADREDLYA
NT seq
7008 nt
NT seq
+upstream
nt +downstream
nt
atggccggagtatttccttaccgagggccgggtaacccggtgcctggccctctagccccg
ttgccagactacatgtcggaggagaagctgcaggagaaagcccgaaaatggcagcaattg
caggccaagcgctatgcggaaaagcggaagtttggatttgtggatgcacagaaggaagac
atgcctccagaacatgtcaggaagatcatccgagaccatggagacatgaccaacaggaag
tttcggcatgataaaagggtgtacttgggtgccctcaagtacatgccgcatgcagtcctc
aagctcctggagaacatgcctatgccttgggagcagattcgggatgtgcctgtgctgtac
cacattaccggagccatttcctttgtcaatgagatcccctgggtcattgaacctgtctac
atctcccagtgggggtcaatgtggattatgatgcgtcgggaaaaaagagacaggaggcat
ttcaagaggatgcgtttccccccttttgatgatgaggagccacctttggactatgctgac
aatatcctcgatgttgagccactggaagccattcagctagagctggaccctgaggaggat
gcccctgtgttggactggttctatgaccaccagccattaagggatagccggaagtatgta
aatggttccacttatcagcgctggcagttcacattgcctatgatgtctactctctaccgc
ctggccaatcagctcttgacagacttggttgatgacaattacttctatctgtttgatctg
aaggctttttttacatccaaggcacttaatatggccattcctggaggccccaaatttgag
cctcttgtccgagacatcaacctacaggatgaagactggaatgaattcaatgacattaac
aagatcatcatccggcagcctatccgcaccgagtacaagatcgcgtttccttacctgtac
aacaacctgccgcaccacgtgcacctcacctggtaccacactcctaatgttgtgttcatc
aaaactgaggatcctgatttgccagctttctactttgaccctttgatcaacccaatttcc
cacagacactctgtcaagagccaggaaccattgccagatgatgatgaggagtttgagctc
ccagagtttgtggagccctttctgaaggacacacccctctacacagacaatacagccaat
ggcatcgccctgctctgggccccccggcccttcaacctacgctctggtcgcactcgccgg
gccctagacatcccccttgttaagaactggtatcgggagcattgtcctgctgggcagcct
gtgaaagtgagggtttcctaccagaagctgcttaagtactatgtgctgaatgccctgaag
caccggcccccgaaagcccaaaagaagaggtatctattccgatccttcaaagccaccaaa
ttcttccagtctaccaagctggattgggtggaggtggggctacaggtttgccgccagggc
tacaacatgctcaacctcctcattcaccgtaagaacctcaactatttgcacctggattac
aacttcaaccttaaacctgttaagacgctcaccaccaaggaaagaaagaaatctcgtttt
ggaaatgctttccacctgtgtcgagaagttctgcgtttaactaagctggtggtggacagt
catgtgcaatatcgattgggcaatgtggatgccttccagctggcagacgggttgcagtat
atcttcgcccatgtggggcagctgacgggcatgtaccgctacaaatacaagttgatgcgg
cagattcgtatgtgcaaggacctgaagcacctaatctattaccgcttcaacacgggtcct
gtagggaagggccctggctgtggcttctgggctgctggctggcgggtctggctgtttttc
atgcgtggcatcacccctttgctggagcgatggctgggcaatctcctggcccggcagttt
gaaggccggcactcaaagggggtggccaagacagtaacaaagcagcgagtggagtcgcat
tttgaccttgaacttcgggccgctgtgatgcatgatatcctggacatgatgcctgagggg
atcaagcagaacaaggcccggaccatcctgcagcacctcagcgaggcctggcgctgctgg
aaggccaacattccctggaaggtccctgggctgccaacaccgatagagaatatgattctt
cggtatgtgaaggccaaggcggactggtggaccaacactgcccactacaaccgagaacgc
atccgccgcggggccactgtagacaaaactgtgtgcaaaaagaacctgggccgcctgact
cggctctacctgaaggcagaacaggagcggcagcacaactacctaaaggacggtccttac
atcacagcagaggaagctgtggcagtgtataccactactgtgcattggctggaaagccgt
agattctcgcccatccccttccccccgctctcctacaagcatgacaccaagttgctgatc
ttggctttggagcggctcaaggaagcttacagtgtgaagtctcggttaaaccagtcccag
agggaggagctaggcctgatcgagcaggcctatgacaacccccatgaggcgctgtcccgc
atcaagcgtcacctcctcacacagagagcctttaaagaagtgggcattgagttcatggac
ctctatagccaccttgtgccagtgtatgatgtggagccactggagaagatcactgatgcc
tacctggaccagtacctgtggtacgaagctgacaagcgccgcctgtttccaccctggatc
aagcctgcagacacagaaccgccgcctctgcttgtttacaagtggtgccaaggcatcaat
aacctgcaggatgtgtgggagacaagcgagggcgagtgcaatgtcatgctggagtcacga
tttgagaagatgtatgagaagattgacttgaccttgctcaataggctgctgcgtctcatt
gtagaccacaatatagctgactacatgacagccaagaacaacgtcgttatcaattacaag
gacatgaaccatacaaattcatatgggatcatcagaggcctgcagtttgcctctttcatt
gtacagtactatggcctggtgatggacttgcttgtgttggggttgcaccgagccagtgag
atggccgggccacctcagatgccaaatgattttctcagtttccaagacatagccaccgag
gctgcccaccccatccgtctcttctgcagatacattgatcgcatccatattttcttcagg
ttcacagcagatgaggctcgggacctgatccagcgttacctgacagagcaccctgacccc
aataacgaaaacatcgttggctacaataacaagaagtgctggccccgagacgcccgcatg
cgcctcatgaagcatgatgtcaacctgggtcgggcagtgttctgggacatcaagaaccgc
ctgccgcgctcagtgacgacagtccagtgggagaacagcttcgtgtccgtgtacagtaag
gacaaccccaacctgctgttcaacatgtgtggctttgagtgccgcatcctgcctaagtgc
cgaaccagctatgaggagttcacccacaaggatggggtctggaacctacagaacgaggtt
actaaagagcggacggctcagtgtttcctgcgtgtggatgatgagtcaatgcagcgcttc
cacaaccgcgtgcgtcaaattctgatggcctccggctccaccaccttcacgaagattgtg
aataagtggaacacagctcttattggccttatgacatactttcgagaggctgtggtaaac
acccaggagctcctggacttgctggtgaagtgtgagaacaagatccagacacgaatcaag
attggcctcaactccaagatgccgagtcgattcccccctgtcgttttctacacccctaag
gagttgggtggacttggcatgctctcaatgggccatgtgctcattccccagtctgacctc
aggtggtccaagcagacagatgtaggtatcacacacttccgttcaggaatgagccacgaa
gaagaccagctgattcccaatttgtatcgctacatacagccatgggagagtgagttcatt
gattctcagcgggtctgggctgagtatgcactcaagagacaagaggccattgctcagaac
agacgactgaccctagaagatctggaagattcatgggatcgtggcattcctcgaatcaac
actctgttccagaaggacaggcacacactggcttatgataagggttggcgtgttcgaact
gactttaaacagtaccaggttttgaagcagaaccctttctggtggacacaccagcggcat
gatgggaagctctggaacctgaacaactaccgtactgacatgatccaggccctgggcggc
gtggaaggcattctcgaacacaccctcttcaagggcacttacttccctacctgggagggg
cttttctgggagaaggccagtggttttgaggagtccatgaagtggaagaagctcaccaat
gctcagcgatcaggattgaaccagattcccaatcgtagattcaccctctggtggtcccca
accatcaaccgagccaacgtgtacgtgggctttcaggtgcagctggacctgactgggatc
tttatgcatggcaagatccccacgctgaagatctctctcatccagatcttccgagctcac
ctgtggcagaagatccacgagagcatcgttatggacttgtgtcaggtatttgatcaggaa
ctggatgcactggaaattgagacagttcagaaggagacaatccacccccgaaagtcctat
aagatgaattcttcctgtgcagatatcctgctgtttgcatcctataagtggaatgtctcc
cggccctcattgctggctgactctaaggatgtgatggatagcaccaccactcagaagtat
tggattgacatacagttgcgctggggggactatgattcccatgacattgagcgttatgcc
cgggccaagttcttggactacaccacagacaacatgagtatctacccttcacccactggt
gtgctcattgccattgacctggcatataacctgcatagtgcctatggaaactggttcccc
ggcagcaagcctctcatacagcaggccatggccaagatcatgaaggcaaatcctgccttg
tatgtgttacgtgaacggatccgtaaggggctgcagctctattcatctgagcccactgag
ccctatctgtcctctcagaactacggtgagctcttctccaaccagattatttggtttgtg
gatgacactaatgtctacagagtgactatccataagacctttgaaggaaacttgaccacc
aagcccatcaatggggccatcttcatcttcaacccacgcacagggcagctgtttctcaag
ataattcacacatctgtgtgggctggacagaagcgtttggggcagttggctaaatggaag
acagctgaggaggtggctgccctgatccggtctctgcccgtggaggagcagcccaagcag
atcattgtcactaggaaaggcatgctggatccactggaggtgcacttgctggacttcccc
aatattgtgattaaaggatcagagctccagctccccttccaggcttgcctcaaggtggag
aagtttggggatctcatccttaaagccactgagccgcagatggttctctttaacctctat
gatgactggctcaagactatctcatcttacacggccttctcccgcctcatcctgattctg
cgcgccctgcacgtgaataacgaccgcgcaaaggtgatcctgaagccagacaagactacg
atcacagaaccgcaccacatctggcccactctgactgatgaggagtggatcaaggtggag
gtgcagctcaaggaccttatcttggctgactacggcaagaaaaacaatgtgaatgtggca
tcgctgacacagtcagaaattcgggacatcatcctggggatggagatctcagcaccatca
cagcagcggcagcagatcgctgagattgagaagcagaccaaggaacagtcgcagctgact
gcaacccagactcgcactgtcaacaagcatggtgacgaaatcatcacctctaccaccagc
aactatgagacccagactttctcctctaagactgaatggagggtcagggccatctctgcc
gccaacctgcacctaaggaccaatcacatctatgtttcatctgatgacatcaaggagact
gggtacacctatatccttcccaagaacgtgcttaagaagtttatctgcatatctgacctt
cgggcccagattgcaggatacctgtatggggtgagcccaccagacaacccccaggtgaag
gagatccgctgcatcgtgatggtgccacagtggggcacgcaccagacggtgcacctgcct
ggccagctgccccagcacgagtacctcaaggagatggaacctttaggttggatccacact
cagcccaacgagtctccccagctgtcaccccaggatgtcaccacccatgccaagatcatg
gctgacaacccatcttgggatggcgagaagaccattatcatcacctgcagcttcacgcca
ggctcctgcaccctgacagcctacaagctgactcccagtggctatgaatggggccgccag
aacacagataagggcaacaaccccaagggctacctaccctcgcactatgagagggtccag
atgctactgtcggatcgcttccttggcttctttatggtccctgcccagtcctcgtggaac
tacaacttcatgggtgtccggcatgatcccaacatgaagtacgagctgcagctggcaaac
cccaaagagttctaccacgaggtgcaccggccctcccacttccttaacttcgctctcctg
caggagggcgaggtctactctgcggaccgagaggacctctatgcgtag
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integrated database retrieval system
