Cervus canadensis (wapiti): 122447945
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Entry
122447945 CDS
T07554
Symbol
PABPC1L
Name
(RefSeq) polyadenylate-binding protein 1-like isoform X1
KO
K13126
polyadenylate-binding protein
Organism
ccad
Cervus canadensis (wapiti)
Pathway
ccad03015
mRNA surveillance pathway
ccad03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccad00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
122447945 (PABPC1L)
09123 Folding, sorting and degradation
03018 RNA degradation
122447945 (PABPC1L)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccad03019
]
122447945 (PABPC1L)
03041 Spliceosome [BR:
ccad03041
]
122447945 (PABPC1L)
Messenger RNA biogenesis [BR:
ccad03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
122447945 (PABPC1L)
mRNA cycle factors
Stress granule specific factors
122447945 (PABPC1L)
Spliceosome [BR:
ccad03041
]
Complex C
Other components
Complex C specific factors
122447945 (PABPC1L)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RBD_DEAH11
RRM_10
RRM_5
SET_assoc
RRM_occluded
RRM_3
xRRM
Motif
Other DBs
NCBI-GeneID:
122447945
NCBI-ProteinID:
XP_043334664
LinkDB
All DBs
Position
10:71798745..71824401
Genome browser
AA seq
631 aa
AA seq
DB search
MGIKTQVSCHGVPPLCAAGASPEPYPGPGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVA
TRRSLGYAYINFQQPADAERALDTMNFEVIKGQPIRIMWSQRDPGLRKSGVGNIFIKNLE
DSIDNKALYDTFSTFGNILSCKVVCDEHGSRGFGFVHFETHEAAQNAISTMNGMLLNDRK
VFVGHFKSRREREVELGARAMEFTNIYVKNLHADVDEQRLQDLFSQFGKMLSVKVMRDDS
GHSRGFGFVNFEKHEEAQKAVVNMNGREVSGRLLYVGRAQKRVERQNELKRRFEQMKQDR
LTRYQGVNLYVKNLDDSIDDEKLRKEFSPYGVITSAKVMTEGGHSKGFGFVCFSSPEEAT
KAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQYMQRLSTMRALGGPIMGSFQQPASYF
LPAVPQPPAQAPYYGSGPPIQPAPRWTAQPPRLSSAYSPRASVVRPAAMSRRPLAPVGSS
RQVSTHVPHLVPHTPQVANIGTQTTGPGVTGCCTPSRPLLTHKYSTPAHCTDRVQEPAVR
VPGQEPLTASMLAAAPLHEQKQMIGERLFPLVYNVHAHLAGKITGMLLEIDNSELLLMLE
SPESLNAKVEEALAVLQAHQATEHMRGVNLC
NT seq
1896 nt
NT seq
+upstream
nt +downstream
nt
atggggatcaaaacccaggtctcttgccatggagtgccgcctctctgcgccgctggcgcc
agcccggagccctacccggggccaggcgacctgcacccggacgtgaccgaggccatgctc
tacgagaagttctcgcccgctggccccatcctgtccatccgcgtgtgccgcgacgtggcc
acccgccgctcgctgggttatgcctacatcaacttccagcagccagcggacgcggagcgg
gcactggacaccatgaactttgaggtgatcaaaggccagcccatccgcatcatgtggtcc
cagcgagacccaggacttcgtaagtcaggtgtgggcaacatcttcatcaagaacctggag
gactccattgataacaaggccttgtacgacaccttctccacctttgggaacatcctgtct
tgtaaggtggtgtgtgatgagcacggctcccgcggcttcggctttgtgcattttgagacc
cacgaggccgcgcagaatgccatcagcaccatgaacggaatgctgctgaatgaccgcaaa
gtcttcgttggccacttcaagtcccgacgggagcgggaggtggagctgggcgctcgggcc
atggagttcaccaacatctacgtgaagaacctccacgcggacgtggacgagcagcgcctg
caggacctcttctcccagtttgggaagatgctgagtgtcaaggtgatgagggatgacagc
ggccactcccgaggctttggctttgtcaacttcgagaagcatgaggaagcccagaaggct
gtggtgaacatgaacgggagggaggtgagcgggcggctgctctacgtgggccgggcccag
aagcgggtggagcggcagaatgagctgaagcgcaggtttgagcagatgaagcaggaccgg
ctgacccgttaccagggcgtgaacttgtatgtgaagaacctggatgactccatagatgat
gagaaactgaggaaagagttctctccctatggagtgatcaccagtgccaaggtgatgaca
gagggtggccacagcaaagggtttggctttgtgtgtttttcctctccagaagaggcgacc
aaggccgtgacagagatgaatgggcgcatcgtgggcaccaagccactgtatgtggcgctg
gcccagcgcaaggaagagcggaaggccatcctgaccaaccagtacatgcagcgcctctcc
accatgcgggccctgggcggccccatcatgggctccttccagcagcctgccagctacttc
ctgcccgctgtgccccagcctccagcccaggctccgtactatggctctggcccacccatc
cagcctgcccccaggtggacagcccagccacccagattgtcatccgcttactcgcccagg
gcctcggtggtccggccagcagccatgtctcggcgccccttggcccccgttggaagctcc
aggcaggtctccacccacgtgccacacctggtgccccacaccccgcaagtggccaacatt
ggtacccagaccacaggacccggtgtgacaggatgctgtacccctagcaggcctctcctg
acgcacaaatattccacgccagcacactgcactgatcgggtccaggagcccgccgtgcgt
gtccccggacaggagcccctgaccgcgtccatgctggccgcagcaccgctacatgagcag
aagcagatgatcggtgagcgtctcttcccccttgtctacaatgtccacgcccacttggcc
ggcaagatcaccggcatgctgctggagattgacaactcggagctgctgctcatgctggag
tcccccgagtccctcaatgccaaggtcgaagaggctctggcagtgctgcaggcccaccag
gccacggagcacatgcgaggagtgaacctgtgctga
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