Cervus canadensis (wapiti): 122449679
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Entry
122449679 CDS
T07554
Symbol
PATL1
Name
(RefSeq) protein PAT1 homolog 1 isoform X1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
ccad
Cervus canadensis (wapiti)
Pathway
ccad03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccad00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122449679 (PATL1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccad03019
]
122449679 (PATL1)
Messenger RNA biogenesis [BR:
ccad03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
122449679 (PATL1)
mRNA degradation factors
5'-3' decay
Decapping complex
122449679 (PATL1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
122449679
NCBI-ProteinID:
XP_043337504
LinkDB
All DBs
Position
11:complement(77019161..77046500)
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AA seq
816 aa
AA seq
DB search
MSGKLGDRKNAICTESHNEAIVLIGKSLEDCPLDEDEDAFQGLGEEDEEIDQFNDDTFGS
GAVDDDWQEAHERLAELEEKLPAAVNEQTGNGERDEMDLLGDHEENLAERLSKMVIENEL
EDPAIMRAVQTRPVLQPQPGSLNSSIWDGSEVLRRIRGPLLAQEMPTVSVLEYALPQRPP
QGPEDDRDLSERALPRRSTSPVIGSPPVKAVPIGTPPKQMAVPSFNQQPVQSCSIDFPPP
ETSSWKGRPMWKILCPKPVHVRPPMPPRYPAPYGERMSPNQLCSVPNSSLLGHPFPPSVP
PVLSPLQRAQLLGGAQLQPGRMSPSQFARVPGFVGSPLAAMNPKLLQGRVGQMLPPAPGF
RAFFSAPPPATPPPPQQHPPGPGPHLQNLRSQAPVFRPDTTHLHPQHRRLLHQRQQQSRS
QHRNLNGAGDRGGHRSSHQDHIRKDPYANLMLQREKDWVSKIQMMQLQSTDPYLDDFYYQ
NYFEKLEKLSAAEEVQGDGPKKERTKLITPQVAKLEHTYKPVQFEGSLGKLTVSSVNNPR
KMIDAVVTSRSEDDETKEKQVRDKRRKTLFIIEKTYSLLLDVEDYERRYLLSVEEERPAL
MDERKHKVCCMYDNLRGKLPGQERPSDDHFVQIMCIRKGKRMVARILPFLSTEQAADILM
TTARNLPFLIKKDAQDEVLPCLLSPFSLLLYHLPPVTVTSLLQQLMNLPQSAAAPAPSNP
HLCAVLQNKFGLSLLLVVLSRGEDLQSSDPASESAQSNPWTEVMFVATRELLRIPQTGLA
KPISIPTNLVSLFSRYVDRQKLNLLESKLQLVQGIR
NT seq
2451 nt
NT seq
+upstream
nt +downstream
nt
atgtcagggaaattgggggatagaaaaaatgccatctgtacagaaagtcataatgaagct
attgtgttgattggtaagtctttggaggattgtcctctggatgaagatgaagatgcattt
cagggcctgggagaggaggacgaagagattgatcaattcaatgatgatacatttgggtca
ggtgcagttgatgatgattggcaggaagcgcatgagcgcctggctgaactggaagagaag
ctgcctgcagcagttaatgaacaaaccggcaatggggaaagggatgagatggacttgttg
ggtgaccatgaggaaaatctggcagagaggctcagtaagatggtgattgaaaatgaactc
gaagacccagctatcatgagggcggtacagaccaggccagtgttgcaaccccaaccagga
agtctgaattccagcatctgggatggatccgaagttctgaggcgaatccgaggacccctg
cttgctcaggaaatgcctacagtgtctgtgttagaatatgccttgcctcagaggcccccc
cagggcccagaagacgatcgggacctttccgagcgtgcattaccaaggcggtccacctcg
cctgtcattgggagtcctcctgttaaagctgtccccataggcaccccacctaagcagatg
gctgtgcccagcttcaaccagcagcctgtgcagtcctgttccatagacttccctccacct
gaaaccagcagctggaaaggaaggccaatgtggaagattctgtgtccaaagcctgtccat
gttcggcccccaatgccaccacggtatcctgctccctatggtgagaggatgtctccaaac
cagctctgcagtgtcccgaactcctccctgctgggccaccctttcccccctagtgtccct
cctgtcctcagccccctccagagagcacagcttcttggaggagcgcagctacagcccgga
cggatgtctcccagccagtttgcacgggtccctggattcgtgggcagcccgcttgctgcc
atgaatcccaagctgttgcaagggcgagtcgggcagatgctccccccggcgccaggcttc
cgcgccttcttcagcgccccaccccccgctacaccgccacctccgcagcagcaccccccc
ggtccaggaccccacctgcaaaacctaagatcgcaggccccagtgtttagaccagacaca
acccaccttcacccacagcaccgccggctcctgcaccagaggcagcagcagagtagaagt
cagcatcggaatctcaacggtgcaggagacagagggggtcaccggagcagtcatcaggat
catatccgaaaggatccgtatgccaacctcatgctgcagcgagaaaaagactgggtctct
aaaatccagatgatgcaactgcaaagcactgatccctacctggatgatttttattaccag
aattactttgaaaaactggagaaactgtcagctgctgaagaagtgcaaggtgatggcccg
aaaaaggagcgtaccaagctcatcacgcctcaggtggccaagctggagcacacctacaag
ccagtgcagtttgagggctctttgggaaagctcactgtctctagtgtgaataatccccga
aaaatgattgatgctgttgtgacatctcggagtgaggatgatgagacaaaagaaaaacag
gttcgggacaaaagacgaaaaacccttttcataattgagaaaacctacagtttactgctt
gacgtggaggattacgaaaggcgttacctcctaagtgtggaagaagagcgacctgccctg
atggatgaaagaaagcacaaagtttgttgcatgtatgacaacttaagggggaaattgcct
ggacaggagaggccaagtgatgaccactttgtacagatcatgtgtatccgaaaggggaag
agaatggtggcccggattctgcctttcctctccacagagcaagcagctgacattctcatg
acaacagccaggaacctccctttcctcatcaagaaggacgcccaggatgaggtgctgcca
tgcctattgagtcccttctctctcctcctctaccatcttccaccagtgactgtcaccagc
cttctgcagcagctgatgaacctacctcagagcgcagcggccccagctccgtccaaccca
cacctctgtgctgtgctccagaacaagttcggcctgtcactgctcctcgtcgtcctgagc
cgcggggaagacctacagagctcagaccccgcttcagaatcggcgcaaagcaacccgtgg
acggaggtgatgttcgtggcaacccgagaacttttgcggattccccagacgggcctggcc
aagccaatctctatacccacaaacctagtatccctcttttctcgttatgttgaccgacag
aaactgaacttgctggagtcaaaactgcagctagttcaggggatacggtaa
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