KEGG   Cervus canadensis (wapiti): 122452479
Entry
122452479         CDS       T07554                                 
Symbol
COP1
Name
(RefSeq) E3 ubiquitin-protein ligase COP1 isoform X1
  KO
K10143  E3 ubiquitin-protein ligase RFWD2 [EC:2.3.2.27]
Organism
ccad  Cervus canadensis (wapiti)
Pathway
ccad04115  p53 signaling pathway
ccad04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:ccad00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    122452479 (COP1)
 09140 Cellular Processes
  09143 Cell growth and death
   04115 p53 signaling pathway
    122452479 (COP1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:ccad04121]
    122452479 (COP1)
Enzymes [BR:ccad01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     122452479 (COP1)
Ubiquitin system [BR:ccad04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    122452479 (COP1)
  Multi subunit type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     122452479 (COP1)
SSDB
Motif
Pfam: Beta-prop_WDR5 Beta-prop_IFT122_1st Beta-prop_THOC3 Beta-prop_WDR3_1st WD40 WD40_Prp19 WD40_CDC20-Fz Beta-prop_TEP1_2nd WD40_WDHD1_1st WD40_Gbeta Beta-prop_EML_2 Beta-prop_WDR3_2nd zf-C3HC4_2 Beta-prop_EIPR1 WDR55 Beta-prop_RIG_2nd Beta-prop_WDR36-Utp21_1st EIF3I Beta-prop_WDR19_1st Beta-prop_WDR36-Utp21_2nd zf-C3HC4 Beta-prop_TEP1_C zf-RING_2 Beta-prop_NOL10_N Beta-prop_CAF1B_HIR1 WD40_MABP1-WDR62_2nd zf-RING_UBOX Beta-prop_EML zf-C3HC4_3 Beta-prop_DCAF4 zf-RING_5 ASA1 DSE1_N Beta-prop_WDR90_POC16_2nd zf-C3HC4_4 Beta-prop_Aladin RING_XB3-XBAT31 WD40_RFWD3 Beta-prop_WDR35_TULP_N WD40_like Beta-prop_Vps41 WD40_MABP1-WDR62_1st Beta-prop_IFT140_1st zf-rbx1 zf-RING_10 PAC11 zf_C2H2_10 RING_ZNF598 zf-RING_11 Sina_RING C_GCAxxG_C_C
Other DBs
NCBI-GeneID: 122452479
NCBI-ProteinID: XP_043342060
LinkDB
Position
13:22529365..22743411
AA seq 735 aa
MSGSRQAGSGSAGTSPGSSAASSVTSASSSLSSSPSPPSVAASAAALGSGGAAQAAGSGG
LGGPARPVLVAAAVSGSGGGSGGGAVSAGLSRLSCAARPSAGVGGSSSSLSSGSRKRPLL
APLCNGLINSYEDKSNDFVCPICFDMIEEAYMTKCGHSFCYKCIHQSLEDNNRCPKCNYV
VDNIDHLYPNFLVNELILKQKQRFEEKRFKLDHSVSSTNGHRWQIFQDLLGTDQDNLDLA
NVNLMLELLVQKKKQLEAESHAAQLQILMEFLKVARRNKREQLEQIQKELSVLEEDIKRV
EEMSGLYSPVSEDSTVPQFEAPSPSHSSIIDSTEYSQPPGFSGSSQTKKQPWYNSTLASR
RKRLTAHFEDLEQCYFSTRMSRISDDSRTASQLDEFQECLSKFTRYNSVRPLATLSYASD
LYNGSSIVSSIEFDRDCDYFAIAGVTKKIKVYEYGTVIQDAVDIHYPENEMTCNSKISCI
SWSSYHKNLLASSDYEGTVILWDGFTGQRSKVYQEHEKRCWSVDFNLMDPKLLASGSDDA
KVKLWSTNLDNSVASIEAKANVCCVKFSPSSRYHLAFGCADHCVHYYDLRNTKQPIMVFK
GHRKAVSYAKFVSGEEIVSASTDSQLKLWNVGKPYCLRSFKGHINEKNFVGLASNGDYIA
CGSENNSLYLYYKGLSKTLLTFKFDTVKSVLDKDRKEDDTNEFVSAVCWRALPDGESNVL
IAANSQGTIKVLELV
NT seq 2208 nt   +upstreamnt  +downstreamnt
atgtctgggagccgccaggccggatcgggctccgccggcaccagcccgggctcctccgcg
gcctcctcggtgacttccgcctcctcgtccttatcctcttccccgtcgcccccttccgta
gcggcttcggcggcggcgctggggtccggcggggcggcccaggccgcgggctccggcggt
ctcgggggcccggcgcggcctgtgctggtggcggccgcggtgtccggcagcggcggcggg
agcggcggcggggcggtgtccgcgggcctgtcccggctcagctgcgcggccaggcccagc
gccggcgtaggagggagcagctccagcctaagcagcggcagcaggaagcgacctctgctc
gcccccctgtgcaacgggctcatcaactcctacgaagacaaaagcaacgacttcgtctgc
cccatctgctttgatatgatcgaagaagcatacatgacgaagtgtggtcacagcttttgc
tacaagtgtattcatcagagtttggaggataataatagatgtcccaagtgtaactatgtt
gtggataatattgaccatctgtatcctaatttcttggtgaatgagctcattctcaaacag
aagcaaagatttgaggaaaagaggttcaaattggaccactcagtgagtagcaccaatggc
cacaggtggcaaatatttcaggatttgttgggaactgaccaagataaccttgatttggcc
aatgtcaacctcatgctggagttactagtgcagaagaagaaacaactggaagcagaatca
catgcagcccaactacagatccttatggaattcctcaaggttgcaagaagaaataagaga
gagcaactggagcagattcagaaggagttaagtgttttggaagaggatatcaaaagagtg
gaagaaatgagcggcttatattctcctgtcagtgaggatagcacagtgcctcaatttgaa
gctccttctccatcacacagtagtattattgattccacagaatacagccaacctccaggt
ttcagtggcagttctcagacaaagaaacagccttggtataacagcacattagcatcaaga
cgaaaacgactcactgctcattttgaagacttagagcaatgttacttttctacaaggatg
tctcgtatctcagatgacagtcgaactgcaagccagttggatgaatttcaggaatgcttg
tccaagtttactcgatataattcagtaagacctttggctacattgtcatatgctagtgat
ctctataatggttccagcatagtttctagtattgaatttgaccgggattgtgactacttt
gcaattgctggggttacaaagaagattaaagtctatgaatatggcacagtcattcaggat
gcggtggatattcattaccctgaaaatgaaatgacctgcaattccaaaatcagctgtatc
agttggagtagttatcataagaacctattagccagcagtgattatgaaggcaccgtcatc
ctatgggatggattcacaggacagaggtcaaaggtctatcaggagcatgagaagagatgt
tggagtgttgactttaatttgatggatcctaaactcttggcttcaggttctgatgatgca
aaagtgaagctatggtctaccaacttggacaactcagtggcaagcatcgaggcgaaggcc
aacgtgtgctgtgtcaaattcagcccctcttccagataccatttggctttcggctgtgca
gatcactgtgttcactactatgatcttcgtaacactaaacagccaatcatggtattcaaa
ggacaccgaaaagccgtttcttatgcaaagtttgtgagtggtgaggaaattgtctctgct
tcaacagacagccagctaaagctgtggaatgtagggaagccatactgcctacgctccttc
aagggtcatatcaatgaaaaaaactttgtaggccttgcttccaatggagattatatagct
tgtggaagcgagaacaactctctttacctgtactataaaggactttctaagactttgcta
acttttaagttcgacacagtcaaaagtgttctggacaaagaccgaaaagaagatgacaca
aatgaatttgttagtgctgtgtgctggagggcacttccagatggggagtccaatgtgctg
attgctgctaacagtcagggtacaattaaggtgctagagttggtatga

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