Cervus canadensis (wapiti): 122452760
Help
Entry
122452760 CDS
T07554
Symbol
COL15A1
Name
(RefSeq) collagen alpha-1(XV) chain isoform X1
KO
K08135
collagen type XV alpha
Organism
ccad
Cervus canadensis (wapiti)
Pathway
ccad04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
ccad00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
122452760 (COL15A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
ccad00535
]
122452760 (COL15A1)
Proteoglycans [BR:
ccad00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
122452760 (COL15A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
122452760
NCBI-ProteinID:
XP_043342336
LinkDB
All DBs
Position
14:complement(9552619..9653876)
Genome browser
AA seq
1369 aa
AA seq
DB search
MAPRRDAQYWRLLLLLSTSALLPGVTRTRSATGLAAQGHLDLTELIGVPLPSSVSFVTGY
GGFPAYSFGPGANVGRPARTLIPSTFFRDFAISVRVKPSSPRGGALFAITDAFQKVIYLG
LRLSGVEDGRQRVILYYTEPGSQVSREAAAFLVPVMTHRWSYFAVVVQDEEVTLLVDCEE
HGRVPFPRSSQALTFEPSAGIFVGNAGATGLERFTGSVQQLIIHPDPRTPEEMCEAEESS
ASGETSGLQETDEIAEILEAVTYTQAPSKEAKVEPIHTPPTPSPASEDAELSGEPVPEGT
TEASDLTAAPHSSSEQGSGEILNGTVETVETVEGSPATDTGSGDGAFLHVTEEGPYTEDL
AATAAAGEAKVPVSTAGEAEASGVPTGGLTLSMSTEDPGEGVTLGPENEEGSAAAAAGEA
EEPVSIARGAEAGSVPTGGLTLPVPTQDPGEAVTLSPISEEGSTTTASVPLGTFEEEEAS
GVPTDDLAFVTPTAAPERGVTSGPGDEDIAAATTEEPLTAAAADALGSGPPEGPPLPSPS
VAAEGGAPPGEAEEWFPGPTGPAGPTEPTVGAEAEGSGLGWGLDVGSGSGDLVHSEELLR
GPPGPPGPPGLPGIPGKPGTDVFMGPPGSPGEDGPTGEPGPPGPEGKPGLDGASGLPGMK
GEKGARGPNGSVGEKGDPGNRGLPGPPGKNGQVGAPGVMGPPGPPGPPGPPGPGCTTGLG
FEDTEGSGSIRHLHEPLSGPTASRGPKGEKGDQGPKGARGMDGASIVGPPGPRGPPGRIE
VLSSSLTNITQGFMNLSDIPELIGPPGPEGMPGLPGFPGPRGPKGDTGVPGFPGLKGEQG
EKGEPGAILTGDVPLERLRGQKGEPGEHGTPGPMGPKGPPGHKGEFGLPGRPGRPGLNGL
KGAKGDQGVMIPGPPGLPGPPGPAGPPGAVINIKGAVFPIPVRPHCKTPVGTTYSGNSEL
ITFHGVKGEKGSWGLPGSKGEKGNPGPQGPPGPPVDPAYLRHFLSSWKGENGDRGLKGEK
GDSNSGFPGFPVSGPPGLPGSPGLVGQKGEAVVGPQGPPGAPGLPGPPGFGTPGSPGPPG
PPGPPGPPAILGAAVALPGPPGPPGQPGLPGSRNLVTTFSNMDDMLQKAHLVIEGTFIYL
KDSTDFFIRVRDGWKKLQLGELIPIPDDSPPPPALSSNPHQPQLSLASISNVNYGRPALH
LVALNTPFSGDIRADFQCFQQARAAGLLSTYRAFLSSHLQDLSTVVRKAERYSLPIVNLK
GQVLFNNWDSIFSGHGGQFNTHVPIYSFDGRDVMTDPSWPQKVVWHGSSTHGVRLVDQYC
EAWRTADTAVMGLASPLNTGKILDQKAYSCANRLIVLCIENSFMTDARK
NT seq
4110 nt
NT seq
+upstream
nt +downstream
nt
atggcgcccaggagggacgcacagtactggcgcctgcttctgctgctttccacctccgcg
cttctccccggggtcactcggacccgctccgcgacagggctggctgcccagggccacctg
gacctcacggagctcatcggtgtcccgctgccgtcgtccgtgtccttcgtcaccggctat
ggtggcttcccagcctacagctttgggcctggtgccaacgtcgggcgtcctgccaggacc
ctcatcccgtccaccttcttcagggacttcgccatcagcgtgagggtgaagcccagcagc
ccccgaggcggtgcgctctttgccatcacggacgccttccagaaggtcatctatctgggc
ctgcggctctcgggcgtggaggacggccgccagcgggtcatcctctactacacggagccc
ggctcccaggtgtcccgcgaagccgctgccttcctggtgcccgtgatgacccacaggtgg
agctactttgctgtggtcgtccaggacgaggaagtgaccctcctcgtggactgtgaggag
cacggccgcgtcccctttccgaggtcctcccaggccttgaccttcgagcccagcgcggga
atctttgtgggcaatgcaggagctacggggctggagagattcactggctccgtgcagcag
ctcatcatccaccctgaccccaggactcccgaggagatgtgtgaagctgaagaatcctcg
gcatctggagagaccagcgggctccaggagacagatgaaatagctgagatcttggaagcg
gtcacctacactcaagccccatctaaagaagcaaaagttgaacccatacacacacctcca
actccatcccctgcctctgaggatgcagagctttccggtgagcctgtacctgaagggacc
acggaagccagcgacttgactgctgccccgcacagcagctctgagcaagggtctggtgag
atcctgaatggcacagtggagacagttgagactgtggaaggttccccggctacagacact
ggctcaggggatggggccttcctgcatgtcactgaagagggtccatacacagaagatttg
gcagccacagcagcagcaggggaggccaaggtgcccgtcagcactgctggggaagcagag
gccagcggtgtgcccaccgggggactgaccctctccatgtccaccgaggaccccggggag
ggcgtcactctcggtccagaaaacgaagaaggctcggcagcagcagcagccggggaggcc
gaggagcccgtcagcattgccaggggagcagaagccggcagcgtgcccaccgggggactc
accctccctgtgcccacccaggaccctggagaagcggtcactctgagtccaatcagtgaa
gaaggctctacaacaacagcatctgtgccgctcggcacttttgaggaagaagaggccagc
ggggtccccaccgatgacctggctttcgtcacacccacagcggcccccgagcgaggggtc
acttctggtcctggtgacgaagacatcgcagcagccacgacagaggagccccttacagcg
gctgcggcagacgcgctgggcagcggcccccctgaggggcccccgctcccctcaccctcg
gtagccgctgaaggaggggcccctccgggtgaagctgaggagtggtttcctggccccact
ggacctgctgggcctactgaacccacggtgggagcagaggctgagggctccggcctgggc
tggggcctggatgtcggctctggctctggtgacctggtgcacagtgaggagctgctaaga
ggtcctccaggtcccccaggcccacctggcttacctgggatcccaggaaaaccaggaact
gatgttttcatgggaccccctggatctcctggagaagatggacccactggtgaacctggt
cccccgggccctgagggaaagcctggacttgatggagcctctggccttcctggaatgaaa
ggggagaagggagctagaggacctaatggctcagttggtgaaaagggtgatcccggcaac
agaggcttaccaggacccccagggaaaaatggacaagttggtgctcctggggtcatggga
cccccagggcctcctggaccccctgggcccccaggccctggatgcacaacaggacttgga
tttgaggacaccgagggctcaggcagcatcaggcacttacatgagcccctctctgggccg
acggcttcacgtggtcccaaaggagaaaaaggagaccagggacctaagggtgccagaggg
atggacggagccagcattgtggggccccccgggcccagggggccgccggggcgcatcgag
gtcctgtctagttctttgaccaacatcacccaaggattcatgaatctctcggacattcct
gagctcatcgggcctccgggccccgagggcatgcctgggctgccaggattcccgggcccg
agaggtccaaaaggtgacactggcgtccctggatttccaggactaaaaggagaacagggt
gagaagggagagccgggtgccatcctgacaggggatgttcctctggaaaggctgaggggc
caaaagggtgaacctggagagcatggaaccccgggaccaatgggacccaaaggaccacca
ggacacaaaggagaatttggcctccctgggcgacctggtcgcccaggactgaatggcctc
aaaggcgccaaaggagatcaaggggtcatgatcccgggtccacctggcctacctggtcct
ccaggccccgcaggaccaccgggagctgtgattaacatcaaaggagctgtcttcccgatt
ccagtccggccacactgcaaaacccctgttggtaccacatattctgggaattcagaactc
atcacttttcatggtgttaaaggagaaaaaggatcctggggccttcctggctccaaagga
gaaaaaggcaacccggggccccagggaccaccaggccctcctgtggatccagcttacctg
aggcactttctgagcagctggaagggggaaaatggcgacaggggactcaaaggagaaaag
ggagactccaacagcggcttccctggcttccctgtgtcggggccaccgggcctgccaggc
agcccaggtctggtgggccagaaaggggaagccgttgtcgggccacagggacccccaggt
gctcctggcctgcctgggccacccggctttgggacacctggttcccctgggccaccagga
cccccgggaccaccaggacctccagctatcctaggagcagctgtggcccttccaggccca
cctggccctccaggacaaccagggcttcccggatccagaaacctggttacaacgtttagc
aacatggatgacatgttacagaaagcacatttggtcatagaagggactttcatctacctg
aaggacagcaccgactttttcattcgggtcagagatggttggaaaaaattacagctggga
gaactgattcccattccggacgacagccctcctccccctgcgctttccagcaatcctcat
cagcctcaactttcgctggcatctatttcaaatgtcaattacggcagacctgcactacac
ttggttgctctgaacacgccgttttctggggacattcgagctgatttccagtgcttccag
caggccagggctgcaggactgttgtccacctaccgagcattcttatcctcccatttgcaa
gatctctccacagttgtaaggaaagcagagagatatagccttccaatagtgaacctcaag
ggtcaagtactttttaataattgggactcaattttttctggccacggaggtcagttcaat
acacacgttccaatatattcctttgatggccgagatgtaatgacagatccttcctggccc
cagaaggtcgtctggcacggctccagcacccacggagtccgtcttgtggaccagtactgt
gaagcgtggagaaccgccgacacggcagtcatgggcttggcctccccactgaacacgggg
aagattctggaccagaaagcatacagctgtgctaaccggctaattgtgctgtgtatcgaa
aacagtttcatgacagatgcgaggaagtaa
DBGET
integrated database retrieval system
