Cervus canadensis (wapiti): 122452913
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Entry
122452913 CDS
T07554
Symbol
FDFT1
Name
(RefSeq) squalene synthase isoform X1
KO
K00801
farnesyl-diphosphate farnesyltransferase [EC:
2.5.1.21
]
Organism
ccad
Cervus canadensis (wapiti)
Pathway
ccad00100
Steroid biosynthesis
ccad01100
Metabolic pathways
Module
ccad_M00101
Cholesterol biosynthesis, FPP => cholesterol
Brite
KEGG Orthology (KO) [BR:
ccad00001
]
09100 Metabolism
09103 Lipid metabolism
00100 Steroid biosynthesis
122452913 (FDFT1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01006 Prenyltransferases [BR:
ccad01006
]
122452913 (FDFT1)
Enzymes [BR:
ccad01000
]
2. Transferases
2.5 Transferring alkyl or aryl groups, other than methyl groups
2.5.1 Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
2.5.1.21 squalene synthase
122452913 (FDFT1)
Prenyltransferases [BR:
ccad01006
]
Terpene biosynthesis
Squalene/phytoene synthase
122452913 (FDFT1)
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Ortholog
Paralog
GFIT
Motif
Pfam:
SQS_PSY
DUF8843
Motif
Other DBs
NCBI-GeneID:
122452913
NCBI-ProteinID:
XP_043342660
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All DBs
Position
14:3969360..3992875
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AA seq
471 aa
AA seq
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MAAVACSTKAMSLFKRTLVLSPGAAPRGAGTPSRGCPLPPAAWPSKDRPRGEGVCGRLRS
PAAAGRSPQPHSSTSASPTAVCLLCPQDSLSSSLKTCYKYLNQTSRSFAAVIQALDGEMR
HAVCIFYLVLRALDTLEDDMTISIERKVPLLHNFHSYLYEPDWRFTESQEKDRQVLEDFP
TISLEFRNLAEKYQIVIVDVCRKMGFGMAEFLDKRVTSEREWDKYCHYVAGLVGIGLSRL
FSASELEDPLIGEDTERANSMGLFLQKTNIIRDYLEDQREGREFWPQETWSKYVKKLGDF
AKPENIDLAVQCLNELITNTLHHIPDVITYLSRLRNQSIFNFCAIPQVMAIATLAACYNN
QQVFKGVVKIRKGQAVTLMMDATNMPAVKAIIHQYMEEIYHRIPNSDPCSTKTRQIISTI
RTQNLPNCQLVSRSHYAPIYLSFVMLLAALSWQYLSTMSQVTEDYVQTGEH
NT seq
1416 nt
NT seq
+upstream
nt +downstream
nt
atggccgcagtcgcctgcagcaccaaggccatgtccctcttcaagaggaccttggtgctg
agtcccggcgcggcacccaggggcgcgggcaccccctcgcgcggctgccccttgcctccc
gccgcctggccgtccaaggaccggccgcggggagagggcgtgtgcggccggctgcggagc
cccgcggcagccggccgctcgccccagccccactccagcacctccgcgtctcccacagcc
gtgtgtctcctctgcccgcaggactcgctcagcagcagcttgaaaacttgctacaagtac
ctgaatcagaccagtcgcagtttcgcagctgttatccaggcgctggatggggaaatgcgc
catgcagtatgcatattttatctggttctccgagctttggacacgctggaagatgacatg
actatcagtatagaaagaaaagtgccactgctacacaacttccactcatacctttatgag
cctgactggcggttcacggagagccaggagaaggaccgacaagtcctggaggactttcca
acgatctccctggagtttcgaaatctggctgagaaatatcaaatagtgattgtcgatgtt
tgccggaagatgggctttgggatggcggagtttctggataagcgcgtgacatctgaacgg
gagtgggacaagtactgtcactatgttgctgggctagtgggaattggcctctcccgtctc
ttctcggcctcagagttagaagaccccttaattggcgaagacacagagcgagccaactct
atgggccttttcctgcagaaaacaaacatcatccgtgattatctggaagaccagcgagaa
ggaagagagttttggcctcaagagacttggagcaagtatgtgaagaagctgggtgacttt
gctaagccagagaacattgacttggctgtgcagtgtctgaacgaactcatcaccaacaca
ctgcaccacatccccgacgtcatcacctacctgtcccgacttaggaaccagagtatattt
aacttctgcgctattccacaggtcatggccattgctactctggctgcctgttacaataac
cagcaggtgttcaagggggtggtgaagattcgcaaagggcaggcggtcaccctgatgatg
gacgccaccaacatgccagccgtgaaagccattatacaccagtacatggaggagatttat
cacagaattcccaactctgacccgtgttccactaaaactcggcaaatcatctccaccatc
aggacacagaatctccccaactgtcagctggtctcacggagccactacgcacccatctac
ctgtcatttgtcatgctcctggcggctctgagctggcagtacctgagcaccatgtcccag
gtcaccgaggactacgttcagactggggagcactga
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