KEGG   Cervus canadensis (wapiti): 122453881
Entry
122453881         CDS       T07554                                 
Name
(RefSeq) LOW QUALITY PROTEIN: roquin-1-like
  KO
K15690  RING finger and CCCH-type zinc finger domain-containing protein
Organism
ccad  Cervus canadensis (wapiti)
Brite
KEGG Orthology (KO) [BR:ccad00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:ccad03000]
    122453881
   04121 Ubiquitin system [BR:ccad04121]
    122453881
Transcription factors [BR:ccad03000]
 Eukaryotic type
  Zinc finger
   Cys3His zinc factors
    122453881
Ubiquitin system [BR:ccad04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    122453881
SSDB
Motif
Pfam: Roquin_1_2-like_ROQ ROQ_II zf-RING_5 zf-RING_UBOX zf-RING_2 zf-C3HC4_4 Prok-RING_4 zf-CCCH zf-C3HC4_3 zf-C3HC4 zf-CCCH_UNK zf-C3HC4_2 FYVE zf_CCCH_4 zf-CCCH_4 Vesi_VP2 PaaA_PaaC Baculo_IE-1 zf-RING_4 zf-RING_6 zf-RING_10
Other DBs
NCBI-GeneID: 122453881
NCBI-ProteinID: XP_043344124
LinkDB
Position
15:complement(32046420..32050152)
AA seq 1124 aa
MPVQAPQWTDFLSCPICTQTFDETIRKPISLGCGHTVCKMCLNKLHRKACPFDQTTINTD
IELLPVNSALLQLVGAQVPEQQPITLCSGVEDTKHYEEAKKCVEELALYLKPLSSARGVG
LNSTTQSVLSRPMQRKLVTLVHCQLVEEEGRIRAMRAARSLGERTVTELILQHQNPQQLS
SNLWAAVRARGCQFLGPAMQEEALKLVLLGLEDGSALSRKVLVLFVVQRLEPRFPQASKT
SIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDSQIVQIAMEAGLRIAP
DQWSSLLYGDQSHKSHMQSIIDKLQTPASFAQSVQELTIALQRTGDPANLNRLRPHLELL
ANIDPSPDAPPPTWEQLENGLVAVRTVVHGLVDYIQNHSKKGADQQQPPQHSKYKTYMCR
DMKQRGGCPRGASCTFAHSQEELEKFRKMNKRLVPRRPLSASLGQLNEVGLPSTAILPEE
GAVDLPSRKTPALPNGIVSAGNTVTQLIPRGTDPSCDSSLKPGKIDHLSSSAPGSPPDLL
ESVPKSISALPVNPHPVPSRGPTELPPMPVTKPLQMVPRGSQLYPAQQADVYYQDPRGAA
PPFEPAPYQQGVYYPPPPQCVSRFVRPPPSAPEPGAPYLDHYPPYLQDRVVNSQYGTQPQ
QYPPMYPPHYDGRRVYPAQSYAREEMFXESPIPIEIPPAAVPPYVPEPRERYQQMEGYYP
VAPHPTQIRPSYNREPPYSRLPPPPQPHPSLDELHRRRKEIMAQLEERKVISPPPFAPSP
TLPPAFHQEEFLDEDLKVAGKYKGNDYSQYSPWSCDTIGSYIGTKDAKPKDVVAAGSVEM
MNVESKGIRDQRLDLQRRAAETSDDDLIPFGDRPTVSRFGAISLTSKTIYQGAGPMQAMA
PQGAPTKSINISDYGPYGTHGGWGGSAYSPHQNIPSQGHFSERERISMSEVASHGKPLPS
AEREQLRLELQQLNHQISQQTQLCGLEREASTLAGQSQPPPPPPPKWPGMVSSEQLSLEL
HQVEREIGKRTRELSMENQCSLDMKSKLNTSKQAENGQPEPQNKVPAEDLTLTFSDVPNG
SALTQENISLLSNKTSSLNLSEDPEGGGDNNDSQRSGVTSSSTP
NT seq 3375 nt   +upstreamnt  +downstreamnt
atgcctgtacaagctccacagtggacagatttcctctcctgcccaatttgcactcagact
tttgacgaaacaattcgaaagcccatcagtttgggttgtggccatactgtctgcaagatg
tgcctgaacaagctccaccgcaaggcttgcccatttgaccagaccactatcaatacagac
attgaactcctcccagtgaactcagccttgctgcagctagtgggtgctcaggttcctgag
cagcagcccattactttgtgtagtggggttgaagatacaaagcattatgaggaagccaag
aaatgtgtagaagaattagcactgtacctgaaaccactcagcagtgctagaggagtgggt
ctgaatagtactactcagagtgttctgagtcgcccaatgcagaggaagctagtgacgctg
gtccactgccaactagtggaagaagaaggcaggattcgtgccatgagggcagctcgatct
ttaggtgaacgaacagttacagagctcattctccaacaccagaatcctcagcaactctct
tccaatctttgggcagcagtcagagctagaggctgccagttccttggaccagcaatgcag
gaggaagccctaaagctggttctcctgggcttagaagatggttctgctttgtctagaaaa
gtattggttctctttgtggtgcaaagattggagccacggtttcctcaagcctctaaaact
agcattgggcatgttgtccagctcctttatagagcctcctgcttcaaggtcaccaaacgt
gatgaagactcttctttgatgcagctgaaagaagaatttagaacctatgaagctctgcgg
cgagaacatgactcccagatagtgcagattgctatggaagcaggcttacgaattgcacca
gaccagtggtcctctttgctgtatggggaccaatctcacaaatctcatatgcagtccatt
attgacaagttgcagaccccagcctcttttgcacaaagcgttcaggaactaacaattgct
ctccagcggactggagatccagcaaacttgaatcgactaagaccccatttggagctatta
gcaaacattgaccctagtccagatgctcctcctcctacttgggaacagctcgaaaatggg
ttggttgctgtgcgtacagtggtacatgggctggttgattatatccagaaccacagcaaa
aaaggagcggatcaacagcagcctccgcagcatagcaaatataaaacatacatgtgtcga
gacatgaagcagagaggaggatgccctcggggggccagctgtacatttgcacactcacag
gaggaactggaaaaatttcgtaaaatgaacaaacgcctggttcccaggagacccctgagt
gcctctttgggtcaacttaatgaggtgggcctgccttcaacagctatccttcccgaagaa
ggggcagtggatctgcctagcagaaaaacccctgctctaccgaatgggattgtatcagca
gggaatacagtaacgcaactgattccacgagggacagaccccagctgcgattccagtctg
aaaccaggaaagatcgatcacctgagcagtagtgcccctgggtcccctcctgacctgcta
gaatcggtccctaagagtatttctgccttgcctgttaatccacatcctgtaccttcaaga
ggaccaacagagctgccccctatgcctgtcactaaacctcttcagatggtgccgcgaggt
tctcagctctatccagcacagcaggctgatgtttattaccaggatcctcgaggagccgct
ccgccgtttgagccagcaccttatcagcagggtgtgtactaccctccaccaccgcagtgt
gtgtcccggtttgtccgacctccaccatctgcccctgagcctggtgctccctacttggat
cattaccctccatacctgcaagatcgtgtagtgaactcacagtatggcacacagccacaa
cagtacccacccatgtacccaccacactatgatggccgtcgagtataccctgctcagtct
tacgcaagagaggagatgttctgagaaagtcccatacccattgagattccacctgcagca
gtgccgccctatgtaccagaacccagagagagataccaacaaatggagggttactatcca
gtggctccacacccaactcagatcagaccttcgtacaacagagagcctccatacagtcgg
cttccgcctcctccccagccccatcctagtctagatgagctacatcgaagacgaaaggaa
ataatggcacagctagaagaaaggaaggttatctctccacctccttttgcaccttcacca
acattgcctcctgccttccatcaagaggaatttttggatgaagacttgaaggtagctggg
aaatacaaaggaaatgattatagccagtactcaccctggtcatgtgacactattggctcc
tacattggaaccaaagatgcgaaacctaaagatgttgtggcagcagggagtgtggaaatg
atgaatgtggagagtaaaggaattagagaccagcgattggaccttcagagaagagcagca
gaaaccagtgatgatgatctcatcccatttggagaccgaccaacagtatctcggtttggt
gccatttctctaacttccaaaacgatatatcagggtgctggcccaatgcaggctatggca
cctcagggagctcccacaaaatctattaacatttcagattatggtccatatggaacccat
ggtggctggggaggttctgcatattcacctcatcaaaacataccttctcagggacacttc
agtgagagggagagaatatctatgtcagaagtggctagtcatgggaaaccccttccgtct
gctgagcgggaacagctacgactggaattacagcagctaaaccatcaaattagccaacag
acccagctatgtggactagagagggaggcgagcaccctggcaggccagtcgcagcccccg
ccaccaccccctccaaaatggcctggaatggtctcaagtgagcagctgagcttggaactg
caccaggtggaaagggaaattgggaagagaacccgggaactgagtatggagaaccagtgt
tctctggacatgaaaagcaaattgaatacaagtaagcaagcagaaaatggacaaccagaa
ccacaaaataaggttccagctgaggaccttacgttgacattcagtgacgtgcctaatgga
tcagcattgacacaagagaatatcagcctcctgtccaacaagaccagctctctgaacctg
tcagaggaccctgagggaggaggggacaataatgactcccagagatcaggagttacatcc
agttctactccctaa

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