Cervus canadensis (wapiti): 122454786
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Entry
122454786 CDS
T07554
Symbol
DICER1
Name
(RefSeq) endoribonuclease Dicer isoform X1
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
ccad
Cervus canadensis (wapiti)
Pathway
ccad05206
MicroRNAs in cancer
Brite
KEGG Orthology (KO) [BR:
ccad00001
]
09160 Human Diseases
09161 Cancer: overview
05206 MicroRNAs in cancer
122454786 (DICER1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ccad03036
]
122454786 (DICER1)
Chromosome and associated proteins [BR:
ccad03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
122454786 (DICER1)
microRNA pathway
RISC loading complex
122454786 (DICER1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Dicer_platform
Dicer_dsRBD
Ribonuclease_3
Dicer_PBD
Ribonucleas_3_3
Dicer_dimer
PAZ
ResIII
Helicase_C
DEAD
Cas3-like_C_2
DSRM_2
Motif
Other DBs
NCBI-GeneID:
122454786
NCBI-ProteinID:
XP_043345316
LinkDB
All DBs
Position
17:9878592..9952088
Genome browser
AA seq
1922 aa
AA seq
DB search
MKSPALQPLSMAGLQLMTPASSPMGPFFGLPWQQEAIHDNIYTPRKYQVELLEAALDRNT
IVCLNTGSGKTFIAVLLTKELSYQIRGDLGRDGRRTVFLVNSANQVAQQVSAVRTHSDLK
VGEYSNLEVSASWTKEKWNQEFTKHQVLVMTCYVALNVLKNGYLSLSDINLLVFDECHLA
ILDHPYREIMKLCENCPSCPRILGLTASILNGKCDPEELEEKIQKLEKILKSNAETATDL
VVLDRYTSQPCEIVVDCGPFTDRSGLYERLLMELEEALNFINDCNISVHSKERDSTLISK
QILSDCRAVLVVLGPWCADKVAGMMVRELQKYIKHEQEELHRKFLLFTDTFLRKIHALCE
EHFSPASLDLKFVTPKVIKLLEILRKYKPYERQQFESVEWYNNRNQDNYVSWSDSEDDEE
DEEIEEKEKPETNFPSPFTNILCGIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFIT
GHGIGKNQPRNKQMEAEFRKQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLP
TEYRSYVQSKGRARAPISNYVMLADTDKIKSFEEDLKTYKAIEKILRNKCSKSVDTGEAD
TEPVVDDDDIFPPYVLRPEDGPRVTINTAIGHVNRYCARLPSDPFTHLAPKCRTRELPDG
TFYSTLYLPINSPLRASIVGPPMSCIRLAERVVALICCEKLHKIGELDDHLMPVGKETVK
YEEELDLHDEEETSVPGRPGSTKRRQCYPKAIPECLRESYPKPGQPCYLYVIGMVLTTPL
PDELNFRRRKLYPPEDTTRCFGILTAKPIPQIPHFPVYTRSGEVTISIELKKSGFTLSLQ
MLELITRLHQYIFSHILRLEKPALEFKPTDADSAYCVLPLNVVNDSSTLDIDFKFMEDIE
KSEARIGIPSTKYSKETPFVFKLEDYQDAVIIPRYRNFDQPHRFYVADVYTDLTPLSKFP
SPEYETFAEYYKTKYNLDLTNLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPLSSAEKRK
AKWESLQNKQILVPELCAIHPIPASLWRKAVCLPSILYRLHCLLTAEELRAQTASDAGVG
VRSLPVDFRYPNLDFGWKKSIDSKSFISIANSSSAENENYCKHSTIVVPENAAHQGANRT
SSLENHDQMSVNCRTLFSESPGKLQIEVSTDLTAINGLSYNKSLANGSYDLANRDFCQGN
HLNYYKQEIPVQPTTSYPIQNLYNYENQPKPSDECTLLSNKYLDGNANTSTSDGSPVTAA
VPGTAETGEAPPDRTASEQSPSPGYSSRTLGPNPGLILQALTLSNASDGFNLERLEMLGD
SFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVSIFDPPVNW
LPPGYVVNQDKSNTEKWEKDEMTKDCMLANGKLDDDFEEEEEEEEDLMWRAPKEDADDED
DFLEYDQEHIKFIDNMLMGSGAFVKKISLSPFSATDSAYEWKMPKKSSLGSLPFSSDFED
FDYSSWDAMCYLDPSKAVEEDDFVVGFWNPSEENCGVDTGKQSISYDLHTEQCIADKSIA
DCVEALLGCYLTSCGERAAQLFLCSLGLKVLPVIKRTDREKAMCLTRENFTSQQKNLSGS
RAAASGAGSRASVLKDLEYGCLKIPPRCMFDHPDADRTLRHLISGFENFEKKINYRFKNK
AYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALV
NNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGMDSELRRSEEDEEKEE
DIEVPKAMGDIFESLAGAIYMDSGMSLEMVWQVYYPMMRPLIEKFSANVPRSPVRELLEM
EPETAKFSPAERTYDGKVRVTVEVVGKGKFKGVGRSYRIAKSAAARRALRSLKANQPQVP
NS
NT seq
5769 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagccctgctttgcaacccctcagcatggcaggcctgcagctcatgacccctgct
tcctcaccaatgggtcctttctttggactgccatggcaacaagaagcaattcatgataac
atttatacgccaagaaaatatcaggttgaactgcttgaagcagctctggaccgtaatacc
atagtctgtttgaacactggctcagggaagacgttcatcgcagtgctgctcactaaggag
ctgtcttaccagatcaggggggacctcggcagggatggcaggaggacggtgttcttggtc
aactcggcaaaccaggttgctcaacaagtgtcagctgtcagaactcactcagatctcaag
gttggggaatactcaaacctggaagtaagtgcatcttggacaaaagagaaatggaaccaa
gagtttactaaacaccaggttctcgttatgacttgctatgtcgccttgaatgttttgaaa
aatggttacttatcactgtcagacattaaccttttggtgtttgatgagtgtcatcttgca
atcctagaccacccctaccgagaaattatgaagctttgtgaaaattgtccatcatgtcct
cgtattttgggactaactgcttccattttaaatgggaaatgtgatccagaggaattggaa
gaaaagatacagaaactggagaaaattcttaagagtaatgctgaaactgcaactgacttg
gtggtcttagacagatatacttctcagccatgtgagattgtggtagactgtggaccattt
actgacagaagtgggctttatgaaagactgctgatggagttagaagaagcacttaatttt
atcaatgactgtaacatatctgtacattcaaaagaaagagattctactttaatttctaaa
cagatcctctcagactgtcgtgccgtactggttgtcctgggaccctggtgtgccgataaa
gtagctggaatgatggtcagagagctacagaaatacatcaaacacgagcaagaggagctg
caccggaagtttctattgtttacagacactttcctgaggaaaatccacgccctgtgtgag
gagcacttctcacctgcctcccttgacctgaagttcgtcactcctaaagtgataaagctg
ctggagatcctccgcaagtacaaaccgtacgagcggcagcagttcgaaagcgtggagtgg
tataataacaggaaccaggataactacgtgtcctggagtgactctgaggacgacgaggag
gatgaagagattgaagagaaagaaaagccagagacaaattttccttctccatttaccaat
atcttgtgtggaattatttttgtggaaagaagatacacagccgtggtcttaaacagattg
ataaaggaagctggcaaacaagatccagagctggcttacatcagcagcaattttataact
ggacatggcatcggaaagaatcagcctcggaacaaacagatggaagcggaattcagaaaa
caggaagaggtacttaggaaatttcgagcacatgaaaccaacctgcttattgcaacaagt
attgtggaagagggtgttgacataccgaaatgcaacttggtggttcgttttgatctgccc
acggagtatcgatcctatgttcagtctaagggaagagcgagggcacccatctctaattat
gtaatgttagcagatacagataaaataaagagttttgaagaagaccttaaaacatacaaa
gctattgaaaagatcttgcgaaacaaatgttccaagtcggttgataccggggaggccgac
acggagcccgtggtggatgacgacgatattttcccaccgtatgtgctgaggcctgaggac
ggtccccgcgtcacaatcaacacggccattgggcacgtcaacagatactgtgctagatta
ccaagtgatccgtttactcatctggctcctaaatgtagaacccgagagttgcctgatggt
acattttattcaactctttatctgccaattaactcacctcttcgagcctccattgttggt
cccccaatgagctgcattcgattggctgaaagagtcgtggctctcatttgctgtgaaaaa
ctgcacaaaattggtgaactggatgaccatttgatgccagttgggaaggagactgttaaa
tacgaggaagagctggatttacacgatgaagaagagaccagtgttccaggaagaccaggt
tccacgaaacgaagacagtgctacccaaaagcaattccagaatgtttgagggagagctat
cccaagcccggtcagccctgttacctgtatgtgattggaatggtcctgacaacaccttta
cctgatgagctcaacttcagaaggcggaagctctacccccctgaggacaccacaagatgc
tttggaatactgacagccaagcccatacctcagatcccgcactttcctgtgtacacacgc
tctggagaggttacaatatctattgagttgaagaagtctggtttcacgttatctctgcaa
atgcttgagttgatcacaagacttcaccagtatatattctcacatattcttcggcttgaa
aaacctgcactagaatttaaacccacagatgcggactcagcctactgtgttctacctctt
aatgttgttaatgactccagcactttggacattgactttaaattcatggaagatatcgag
aaatctgaagctcgcataggcattcccagcacaaagtattcaaaagaaactccctttgtt
ttcaaattagaagattaccaagatgcagttatcattccaagataccgcaattttgatcag
cctcatcgattttatgttgctgacgtgtatactgatcttacccccctgagtaaatttcct
tcccctgagtatgaaacttttgcggagtattataaaacaaagtataaccttgacctgacc
aatctcaaccagccgctgctggacgtggaccacacgtcttcacgacttaatcttttgaca
cctcgccatttgaatcagaaggggaaagctcttcctctaagcagtgctgagaagaggaaa
gccaagtgggaaagcctgcagaataaacagatactagttccagaactctgtgctatacat
ccaattccagcatcactgtggagaaaagccgtttgtctccccagcatactttaccgcctt
cactgccttctgactgcagaggagctcagagcccagacagccagcgatgctggtgtggga
gtcagatcacttcctgtggattttagataccctaacttagacttcgggtggaaaaaatct
atcgacagcaaatctttcatctcaattgctaactcctcttcagctgaaaatgagaattac
tgtaagcatagcacaattgtcgtccctgaaaatgctgcacatcaaggtgctaatagaacc
tcctctctagaaaatcatgaccaaatgtctgtgaactgcagaacgttgttcagcgagtca
cctggtaagctccaaattgaagtttcaacagatctgacagcaattaatggtctttcttac
aataaaagtcttgccaatggcagttacgatttagctaacagagacttttgccaaggaaac
catctgaattactacaagcaggaaatacctgtacaaccaactacctcatatcccattcag
aatttatacaattacgagaaccagcccaagcccagcgatgaatgtactctactgagtaat
aaataccttgatggaaatgctaacacatctacctcagatggaagtcccgtgacggccgcc
gtgcctggtactgcagagactggggaggcgcccccggacaggacggcttctgagcagagc
ccttctcctggctactcctccaggacgcttggccccaaccctgggctcattcttcaggct
ttgaccctttcgaacgctagcgatggatttaacctggagcggctcgagatgcttggcgac
tccttcctgaagcacgccatcaccacgtatctcttctgcacttaccccgatgcgcacgag
ggccgcctttcctacatgagaagcaaaaaggtcagcaactgtaatctgtatcggcttgga
aaaaagaaggggctgcccagccgcatggtggtgtccatatttgacccccctgtgaattgg
cttcctcctggttatgtagtaaatcaggacaaaagtaacacagagaaatgggaaaaagat
gaaatgacaaaagactgcatgttggctaatggcaaactggacgatgactttgaggaggag
gaagaggaggaggaggacctgatgtggagggctcccaaggaggatgccgacgacgaggac
gacttcctggagtacgatcaggaacacatcaagttcatagataacatgctgatggggtca
ggggctttcgtcaagaaaatctcgctttctcctttttcagccaccgattctgcatacgag
tggaaaatgcccaaaaagtcctccctaggtagtctgccattctcatccgattttgaggat
ttcgactacagctcgtgggatgcgatgtgctacctggatccaagcaaagctgttgaagag
gatgattttgtggtggggttctggaatccatcagaagaaaactgcggtgtcgacacgggg
aagcagtccatctcttacgacctgcacacggagcagtgcattgccgacaaaagcatagcc
gactgcgtggaggccctgctgggctgctatttaaccagctgtggcgagagggccgctcag
cttttcctctgttctctggggctgaaggtgctcccggtaattaaaaggactgatcgggaa
aaggccatgtgcctgaccagggagaatttcaccagccaacaaaagaacctttcagggagc
cgtgcagccgcctctggagctggctcccgagcctctgtgttgaaagacttggagtatggg
tgtttgaagatccccccgaggtgtatgtttgatcaccccgatgcagacaggacactgcgt
cacctgatctcgggttttgaaaatttcgaaaagaaaatcaactacagattcaagaacaag
gcttaccttctacaggcttttacacacgcctcttaccactacaatacgatcacggattgt
taccagcgcttagaattcctgggagatgcaattttggactacctcataaccaagcacctt
tatgaagacccacggcagcactccccaggggtcctgactgacctgcgctctgctctggtc
aacaacaccatcttcgcgtcgttggctgtgaagtatgactaccacaagtactttaaggcc
gtttctcccgagctcttccacgtcatcgacgatttcgtgcagtttcagctcgagaagaac
gaaatgcaaggaatggattctgagcttaggagatccgaggaggatgaagagaaagaagag
gatattgaagttccaaaggccatgggggatattttcgagtcacttgctggtgccatctac
atggacagcgggatgtcgctggagatggtctggcaggtgtactatcccatgatgcggccg
ctgattgaaaaattttctgcaaatgtgccccgttcccctgtgcgagaactgcttgaaatg
gaaccagaaactgccaaattcagcccagctgagagaacctacgacggcaaggtcagagtc
accgtggaagtggtcggaaaggggaaattcaaaggtgttggccgaagttacaggattgcc
aagtctgcagcagcaagaagagccctacgaagcctcaaagctaatcaacctcaggttccc
aacagctga
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integrated database retrieval system
