Cervus canadensis (wapiti): 122455070
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Entry
122455070 CDS
T07554
Name
(RefSeq) SWI/SNF complex subunit SMARCC2-like isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
ccad
Cervus canadensis (wapiti)
Pathway
ccad03082
ATP-dependent chromatin remodeling
ccad04714
Thermogenesis
ccad05225
Hepatocellular carcinoma
Brite
KEGG Orthology (KO) [BR:
ccad00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
122455070
09150 Organismal Systems
09159 Environmental adaptation
04714 Thermogenesis
122455070
09160 Human Diseases
09162 Cancer: specific types
05225 Hepatocellular carcinoma
122455070
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccad03021
]
122455070
03036 Chromosome and associated proteins [BR:
ccad03036
]
122455070
Transcription machinery [BR:
ccad03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
122455070
Chromosome and associated proteins [BR:
ccad03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
122455070
PBAF complex
122455070
GBAF(ncBAF) complex
122455070
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_3
SWIRM
SWIRM-assoc_1
Myb_DNA-binding
Myb_DNA-bind_6
Chromo
Motif
Other DBs
NCBI-GeneID:
122455070
NCBI-ProteinID:
XP_043345846
LinkDB
All DBs
Position
17:complement(29738504..29742920)
Genome browser
AA seq
1242 aa
AA seq
DB search
MAVRKKDGGPNVKYYEAADTVTQFDNVRLWLGKNYKKYIQAEPPTNKSLSSLVVQLLQFQ
EEVFGKHVSNAPLTKLPIKCFLDFKAGGSLCHILAAAYKFKSDQGWRRYDFQNPSRMDRN
VEMFMTIEKSLVQNNCLSRPNIFLCPEIEPKLLGKLKDIIKRHQGTVTEDKNSASHVVYP
VPGNLEEEEWVRPVMKRDKQVLLHWGYYPDSYDTWIPASEIEASVEDAPTPEKPRKVHAK
WILDTDTFNEWMNEEDYEVNDDKNPVSRRKKISAKTLTDEVNSPDSDRRDKKGGNYKKRK
RSPSPSPTPEAKKKNAKKGPSTPYTKSKRGHREEEQEDLTKDMDEPSPVPNVEEVTLPKT
VNTKKDSESAPVKGGTMTDLDEQEDESMETMGKDEDESSPGNKGEQTKNPELHEDNVTEQ
THHIIIPSYAAWFDYNSVHAIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPQEY
LTSTACRRNLAGDVCAIMRVHAFLEQWGLINYQVDAESRPTPMGPPPTSHFHVLADTPSG
LVPLQPKTPQGRQVDADTKAGRKGKELDDLVPETAKGKPELQNSASQQMLSFPDKGKEKP
ADMQNFGLRTDMYTKKNVPSKSKAAASATREWTEQETLLLLEALEMYKDDWNKVSEHVGS
RTQDECILHFLRLPIEDPYLEDSQASLGPLAYQPIPFSQSGNPVMSTVAFLASVVDPRVA
SAAAKSALEEFSKMKEEVPTALVEAHVRKVEEAAKVTGKADPAFGLESSGIAGTTSDEPE
RIEESGTDEARAEGQATEDKKEPKEPREGVGIAEEEAKEKTSEPPKKDDEKGKDGDSEKE
SEKGDGDLTADPEKEKEPKEGQEEVLKEAVESEGERKTKVERDIGEGNLSTAAAAALAAA
AMKAKHLAAVEERKIKSLVALLVETQMKKLEIKLRHFEELETIMDREREALEYQRQQLLA
DRQAFHMEQLKYAEMRARQQHFQQMHQQQPPPPPPALPPGSQPVPPPGTAGPPAVHGLAM
APASVAPAPAGSGAPPGSLGPSEQLGQAGPTVGPQQQPPAGAPQPGAVPPGVPPPGPHGP
SPFPNQQTPSMMPGAVPGSGHPGVAGNAPLGLPFGMPPPPPAPSIIPFGSLADSISINLP
PPPNLHGHHHHLPFAPATLPPPNLPVSMANPPHPNLPATTTMPSLPLGPGLGSAAAQSPA
IVAAVQGNLLPTASPLPDPGTPLPPDPTAPSPGTVTPVPPPQ
NT seq
3729 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgcggaagaaggacggcggccccaacgtgaagtactacgaggccgcggacacc
gtgacccagttcgacaacgtgcggctgtggctcggcaagaactacaagaagtatatacaa
gccgaaccacccaccaacaagtccctgtctagcctggttgtacagttgctacaatttcag
gaagaagtttttggcaaacatgtcagcaatgcaccgctcactaaactgccgatcaaatgt
ttcctagatttcaaagcaggaggctccctatgccacatacttgcagctgcctacaagttc
aagagtgaccagggatggcggcgttacgatttccagaatccatcacgcatggaccgcaat
gtggaaatgttcatgaccattgagaagtccttggtgcagaataattgcctgtctcgacct
aacatttttctgtgcccagaaattgaacccaaactgctagggaaattaaaagacattatc
aagagacatcagggaacggtcactgaggataagaacagtgcttcccatgttgtgtatccc
gttccagggaacctggaggaagaggaatgggtacggccggtcatgaagagagataagcag
gttcttctgcactggggctactatcctgacagttatgacacgtggatcccagccagtgaa
attgaagcatctgtggaagatgctccaactcctgagaagcctcggaaggttcatgcaaaa
tggatcctggacacagacaccttcaatgaatggatgaatgaggaagactacgaagtaaat
gatgacaaaaaccctgtctcccgccgaaagaagatttcagccaagacgctgacagatgag
gtgaacagcccagactcagaccgacgggacaagaaggggggcaactataagaagaggaag
cgctccccctcaccgtcaccaaccccagaagccaagaagaagaatgctaagaagggcccc
tcaaccccttacaccaagtccaagcgaggccacagagaggaggagcaggaagacctgacg
aaggacatggacgagccctcgcccgttcccaacgtggaggaggtgacgctgcccaagacc
gtcaacactaagaaggactcggagtcagccccagtaaaaggcggcaccatgaccgaccta
gatgaacaagaggatgagagcatggagaccatgggcaaggacgaggacgagagcagcccg
ggcaacaagggggagcagaccaagaacccggagctgcacgaggacaacgtgaccgagcag
acccaccacatcatcatccccagctacgcggcctggtttgactacaacagtgttcacgcc
atcgaacggagggctctccccgagttcttcaatggcaagaacaagtccaagactccagaa
atctacctggcctatcggaacttcatgattgacacttaccggctgaacccccaagagtat
ctcacgtccactgcctgtcgcaggaacctcgcgggggatgtctgtgccatcatgagggtc
catgccttcctagaacagtggggtctcatcaactaccaggtggatgctgagagtcgacca
actcccatggggcctccgcccacttctcacttccacgtcttggcggacacaccgtccggg
ctggtgccgctgcagcccaagaccccgcagggccgccaggttgatgctgataccaaggct
gggcgaaagggcaaagagctggatgacctggtgccagagacagctaagggcaagccagag
ctgcagaactccgcttcccagcaaatgctcagcttccccgacaaaggcaaggagaaaccg
gcggacatgcagaacttcgggctgcgcacggacatgtacacgaagaagaacgtgccctcc
aagagcaaagccgcagccagcgccactcgcgagtggacggagcaggagaccctgctgctc
ctggaggcgctggagatgtacaaggacgactggaacaaggtgtccgagcacgtgggcagc
cgcacgcaggacgagtgcatcttgcatttcctccggcttcccatcgaagacccgtacctg
gaggactcgcaggcctccctgggccccctggcctaccagcccatccccttcagccagtcc
ggcaaccctgtgatgagcaccgttgccttcctggcctctgtcgtcgaccctcgagtggcc
tcagctgctgcgaagtcagccctggaagagttctccaaaatgaaggaagaggtccccaca
gctttggtggaggcccacgttaggaaagtggaagaagctgccaaagtgacaggcaaggcg
gacccagcctttggtctggaaagcagtggcatcgcagggaccacctccgatgagccggag
aggatcgaggagagcgggactgacgaggcgcgggcggagggccaggccacagaggataag
aaggaacccaaggaacctcgagaaggagttgggattgcggaggaagaagcaaaggagaag
accagtgagccacccaagaaggacgacgagaaggggaaagacggcgacagcgagaaggag
tcagagaagggtgatggagacctgacagcggatcctgagaaggagaaggagcccaaggag
gggcaggaggaggtgctgaaagaagcagtggagtcggagggggagcggaagacgaaggtg
gagcgcgacatcggcgagggcaacctctccaccgctgccgccgccgccctggctgccgcc
gccatgaaggccaagcatttggctgccgttgaggagaggaagatcaaatctctggtggcc
ctgctggtggagacccagatgaaaaagctggaaatcaaactccggcactttgaggagcta
gagacgatcatggaccgggagcgggaagcgctggagtaccagaggcagcagctgctggcc
gacagacaagccttccacatggagcagctgaagtacgcggagatgcgggcccggcagcaa
cacttccagcagatgcaccagcagcagccgccgccgccgccgccggccctgcccccaggc
tcccagccggtcccgcctccaggcaccgctgggccacccgctgtccacggcttggccatg
gctccagcctctgtggccccggctcccgcgggcagtggggcccctcctggaagcttgggg
ccctcggaacagctcgggcaggcagggccaactgtggggccacagcagcagccaccagct
ggagccccccagcctggggccgtcccaccaggggtaccgccccctggaccccatggcccc
tcaccgttccccaaccaacaaactccctcaatgatgccaggggcagtgccaggcagcggg
cacccaggcgtggcgggtaatgctcctttgggtttgccttttggcatgccgcctccccct
cccgcgccatccatcatcccatttggtagcctagccgactccatcagtattaacctcccc
cctcctcctaacctgcatgggcatcaccaccatctcccgttcgccccggccacgctcccc
ccacctaacctgcctgtgtccatggcgaaccctccacaccctaacctgccggcgaccacc
accatgccatctttgcctctcgggccggggctcggatccgcagcagcccagagccctgcc
attgtggcagctgttcagggcaacctgctgcccactgccagcccgctgccagacccaggc
acccccctgcctccagaccccacggccccgagcccaggcacagtcacccccgtgccaccc
ccacagtga
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