Cyanistes caeruleus (blue tit): 111926725
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Entry
111926725 CDS
T05602
Symbol
SCAF8
Name
(RefSeq) protein SCAF8
KO
K13191
RNA-binding protein 16
Organism
ccae
Cyanistes caeruleus (blue tit)
Brite
KEGG Orthology (KO) [BR:
ccae00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccae03021
]
111926725 (SCAF8)
03041 Spliceosome [BR:
ccae03041
]
111926725 (SCAF8)
Transcription machinery [BR:
ccae03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
111926725 (SCAF8)
Spliceosome [BR:
ccae03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
111926725 (SCAF8)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CID
RRM_1
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
111926725
NCBI-ProteinID:
XP_023779173
LinkDB
All DBs
Position
3
AA seq
1334 aa
AA seq
DB search
MTQITKAAIKAIKFYKHVVQSVEKFIQKCKPEYKVPGLYVIDSIVRQSRHQFGQEKDVFA
PRFSNNIISTFQNLYRCPGDDKSKIVRVLNLWQKNNVFKSEIIQPLLDMAAGIPPPVVTP
VLPSTTAAMSNNTPGTPVTPVTPANVAQSLPDPWVSQIANTDTLAAVAQILQSPQGQQLQ
QLIQTLQIQQQKPQPSLLQALDAGLVVQLQALTAQLTAAAAAANTLNPLEQSVSFNKKLM
DRFDFGEESEQNEEPKKETPSSQLPLVPESVNNSLFHQLAEQLQQQNLEHLRQQLLEQQQ
PQKASPEENQEGNFGSEHSASPSQGSSQQQFLEVEASVDDTMDIHTQDMDIDEGQDIAEE
EIFEQEEKKSAVRSRSRTRSRSRSRSPRKRRSRSRSGSRKRKHRKRSRSRSRERKRKSSR
SYSSERRAREREKERQKKGLPPIRSKTLSVCSTTLWVGQVDKKATQQDLTNLFEEFGQIE
SINMIPPRGCAYVCMVHRQDAYRALQKLSSGSYKIGSKIIKIAWALNKGVKTEYKQFWDV
DLGVSYIPWEKVKLDDLEGFAEGGMIDQETVNTEWETARSSEAAKENTQTTQSATVDKST
VITTQTEAYTQPVTMLQIPVAPAVPAVSLVPPAFPVTMSVPPPGYSPIPPPPFLRASFNP
SQPPPGYMPPPVPPVVPPPVVPPPVVPPVVPTPLVQPPLPIAQETMKDVPFTGLVLPVGT
VTSNLATPTLSAGSVFNPLPINKPESDDKVSHLTDLQISSSENSRSVQSDVSSSSGLVGG
VQPPSVSSNSGHPGEGPPPTVSSSSGLAGGVQPPSVSSSSGHVGGVQPPTVSSNSGLAGG
MQLPAVSSSSSLAGGIQPTNASSSSGLMAGVPPPNVSSSSGLLAGVHPPSVSSSPGLLTG
MQPPSVSSSSGVLAGVQPPSVSSNSGLLIMPPPNVSTSSGLMGVPPPNISSNSGLLAMQH
PAAVPNMPHLNISNQRMPGMPVIDIRPGLMPHSPGPRFPLMQPGMPPQRTIPPPAILDPS
LHPPPPRGPFPPGDIFNQTERPFGTPGRQNIDNISNPEKRLPLGGDNIQQEGDRDYRFPP
VENRDNLNRPSPVDVRDSVGRPPVDPREGIGRPPVDGREHFARPHIDMRENFGRPGIDNL
GRREHFGFNSDKHWGQRGDYDEREHHAFPIYGGPKGFHEDRERFRHVNYRFDSRSGGPSW
NRGFEQDAHRDFDDRRRPWERQRDRDDRDFNFCREINGNRFGRDRMSNNWIPPPHPRVFE
YFDGATSQRKVDNMPQVNGENTETESQPPTAQVQDDPELYEKLTSSVEINKEKSDTEADI
ESEPVVESTETEGT
NT seq
4005 nt
NT seq
+upstream
nt +downstream
nt
atgacacagatcaccaaggcagcaatcaaggctataaagttctacaagcatgttgttcag
agtgttgagaaattcattcaaaagtgcaaaccagagtacaaggttcctggtctgtatgtc
attgactccattgtgagacagtcccggcatcagtttggacaagaaaaggacgtatttgcg
ccaagattcagcaataacatcatcagcactttccagaacttgtaccgttgtcctggtgat
gacaagagcaaaattgttagagtgcttaatttgtggcagaagaataatgttttcaagagt
gaaattattcagcctctcttggatatggcagcaggaattcctcctcccgttgtgacccct
gtcttgcccagcactacagctgctatgagcaacaatacaccaggtacacctgtgactcca
gttaccccagccaatgtggcacagagtttacctgatccttgggtatctcagattgctaac
acagacacccttgctgctgttgcacagattttacagagtcctcaaggccaacagcttcag
caattgatacagacactgcagatacagcagcagaaacctcagccttcgctacttcaagcc
ctggatgccggacttgtcgttcagttacaggccctcacagcacaactcacagctgcagca
gctgctgctaacacacttaatccactggaacagagtgtctcttttaataagaagctgatg
gacaggtttgactttggggaagaatctgaacaaaatgaagagcctaaaaaggaaactccc
tcttcccaattgccattagtaccagaatctgtgaacaactcactttttcaccaactagct
gaacagctgcagcaacaaaatttagaacatctcagacaacagcttctggagcaacagcag
cctcaaaaggcgagccctgaggagaatcaagaaggaaattttggttcagagcactctgcg
tcaccatcacaagggagtagtcaacaacagtttttagaagtagaagcaagtgtagatgat
acaatggatattcacactcaggacatggatatagatgaaggtcaggatattgctgaagaa
gagatttttgaacaagaagaaaagaaatcagctgttcgttcaagatcaagaactcgttca
agatctcgttcaaggtcaccaagaaaacgaaggtctagatctcggtctggttctcgtaag
cggaaacacagaaagcgttcacgctcaagatcaagagaaaggaagaggaagtcatctcgg
tcttactccagtgaaagaagggctagggaaagggaaaaagaacgtcagaaaaagggattg
cctcctatacggtcaaaaacgctaagcgtttgcagtactactctttgggtaggtcaagta
gacaagaaggctactcagcaagatttaacaaacttgtttgaagaatttggacagatagag
tcaattaatatgattcccccaagaggatgtgcttatgtctgtatggtacatagacaagat
gcatatcgtgctcttcagaaacttagttctgggtcatataaaattggatctaaaattatt
aagattgcttgggctttgaataaaggtgtgaaaacagaatacaagcaattctgggatgtg
gatctgggggtttcctatattccatgggagaaagtgaaattggatgatttggaaggcttt
gctgaaggtggcatgattgaccaggaaacagtaaatacagagtgggaaacagccagaagc
tcagaagctgctaaagaaaatactcaaacgacgcagagtgctacagttgataagagtacc
gttattacaacacagacagaagcttacacacaaccagtcactatgctgcagattccagta
gctccagctgtgcctgctgttagcttggttccacctgcgtttcctgtcacaatgtctgtc
cctcctcctggttatagcccaattcctccaccacccttcttgagagcaagtttcaaccct
tcacagccacctccaggttatatgcctcctccagttccacctgttgtcccgccacctgtt
gtcccaccacctgttgtcccaccagttgttccaacacctttagtacagcctccattacca
attgcacaagagacgatgaaggatgttccttttactggccttgttctaccagttggcaca
gttactagcaatctagctactccaacattatctgctggaagtgtttttaatcccctgcca
atcaacaaacctgaatcagatgacaaagtatcacatcttacagaccttcagatttcttcc
agtgaaaacagtagatctgtgcaaagtgatgtctcgagtagctctggacttgttggagga
gtgcagccacccagtgtctcaagcaattctgggcatcctggagaagggccaccacccact
gtctcaagtagctctggacttgcagggggagtacagccacccagtgtttcaagcagctct
ggacatgtaggaggagtgcaaccaccaactgtttccagcaattctggtcttgcaggagga
atgcagctacctgctgtctccagtagctcttctcttgctggcgggattcagccaactaat
gcctcaagtagctctggacttatggctggagtgccaccaccaaatgtctcaagtagctca
gggcttctagctggagtccatccacccagtgtctcaagcagccctggccttctgacagga
atgcagccacccagtgtgtccagcagctcaggagttctggcaggagtacagccacccagt
gtttcaagcaactctgggcttctcataatgccaccacccaatgtctcaactagttctgga
cttatgggagtgccaccaccaaacatttcaagtaattctggacttctggcaatgcagcat
ccagctgcagttccaaacatgcctcatttaaatatcagtaatcaaagaatgccaggaatg
cctgttatagatatccgtccaggcctaatgccccattcccctggaccaaggtttccatta
atgcagccaggaatgccaccacagcgtactattcctcctcccgcaatccttgatccatct
cttcacccaccaccacctcgtggtccttttcctccaggagatatttttaatcaaacagaa
agaccttttggaacaccaggaagacaaaatattgataacatttctaatccagagaaaagg
ctgccacttggaggtgataacattcaacaggagggagacagagattatcgctttcctcca
gtggaaaaccgagataatcttaacagaccatctccagtagatgtcagagattctgttgga
cgaccaccggttgatccaagagagggtataggaagacctccagtagatggaagagaacac
tttgcaagaccacatatagacatgagagaaaattttggaagaccaggtatagataacctt
ggccgaagagagcattttggtttcaattcagacaagcactggggacagagaggagattat
gatgaaagagagcaccatgccttccctatttatggtggccctaaaggtttccatgaagac
agagagaggtttcgacatgtaaactataggtttgatagtaggagtggtggtcccagttgg
aatagaggatttgaacaagatgctcacagagattttgatgaccgcagaagaccctgggaa
agacagagggatagggatgacagagattttaatttttgcagagaaattaatggaaacagg
tttggaagagacagaatgtcaaacaactggatcccgcctccacatccacgggtttttgaa
tattttgatggggccacttctcaacgcaaagttgataatatgccccaggtaaatggtgaa
aatacagagacagaaagtcagcctccaactgcacaggtgcaggatgatccagaactttat
gaaaaactgacatcttccgtcgagataaacaaagagaagagtgacacagaagctgatata
gagagtgaaccagtggtagaaagcacagaaactgaggggacataa
DBGET
integrated database retrieval system
