Cyanistes caeruleus (blue tit): 111928095
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Entry
111928095 CDS
T05602
Symbol
RFC1
Name
(RefSeq) LOW QUALITY PROTEIN: replication factor C subunit 1
KO
K10754
replication factor C subunit 1
Organism
ccae
Cyanistes caeruleus (blue tit)
Pathway
ccae03030
DNA replication
ccae03410
Base excision repair
ccae03420
Nucleotide excision repair
ccae03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ccae00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
111928095 (RFC1)
03410 Base excision repair
111928095 (RFC1)
03420 Nucleotide excision repair
111928095 (RFC1)
03430 Mismatch repair
111928095 (RFC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ccae03032
]
111928095 (RFC1)
03400 DNA repair and recombination proteins [BR:
ccae03400
]
111928095 (RFC1)
DNA replication proteins [BR:
ccae03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
111928095 (RFC1)
DNA repair and recombination proteins [BR:
ccae03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
111928095 (RFC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RFC1
BRCT
AAA
PTCB-BRCT
AAA_22
AAA_14
Rad17
BRCT_2
AAA_5
AAA_16
RNA_helicase
AAA_30
RuvB_N
AAA_17
AAA_33
AAA_18
nSTAND3
AAA_7
TIP49
NTPase_1
AAA_19
Motif
Other DBs
NCBI-GeneID:
111928095
NCBI-ProteinID:
XP_023781117
LinkDB
All DBs
Position
4
AA seq
1144 aa
AA seq
DB search
MSANPGGSDTNQDIRKFFGVVPPAKRQERETVKKSEKIKNGEGPSNGKKREKESKVNNSP
SEDDYKQKRMKKKRRIIYDSDSEEEVQSVKKSKKSPEKKAATSKLGKVLKQDPVVYISET
DEDDDFANKRISLKPKENGTSATGRPGTNTVKKEEVKPQAKSKPLSPVKQTPTSALDFFG
TRSVQRSEKKLVASKRKEPSQSSDSTLDDEAIARQLQLEEDSELERQLHEDEEFARTLAM
LDETPQKKKARKDTEGEQTVLSINSSPNTTAAGYKQSERVKVTDSTGAAKNYSVKPQAKP
EQLKGSHLSPQSSDGKKEVMAEKERGAQNSLSREKAASGKEEKTTPKKEKVSPKKTESIS
PEDSEKKRNNYQAYRSFLNREGPKALGSKEIPQGAENCLEGLTFVITGVLECIERDEAKS
LIERYGGKVTGNVSKKTNYLVVGRDCGQSKCEKASTLGTKVIDEDGLFDLIRTMPGKKSK
YELAAEAEVVFFLXKPKKTPQKAEAGKRNFSPFKREADNKKYKSTPEKGDSSRFVKKETT
AVRKLADFRHKTVEEKGAPKPTGNLVSEVNEDGTERLLWVDKYKPVSLKAIIGQQGEQSC
ANKLLRWLRNWHKNTFEDGQAKPSKTGSKDDGTGFKAALLSGPPGVGKTTTAALVCKELG
YSYVELNASDTRSKNSLKEVVAESLNNTSIKDFCSGASSSVSGKHVLIMDEVDGMAGNED
RGGIQELIGLIRHTKIPIICMCNDRNHPKMRSLVHYCLDLRFQRPRLEQIKGAMMSIAFK
EGLKIPPPAMQEIILAANQDIRQVLHNLNMWCAKDKSLTYDEAKTDASRAKKDIKLGPFD
VVRKVFAAGEEAARMSLIDKSDLFFHDYSLAPLFVQENYVHVKPAAAGGNLKKHLVLLSR
AADSICDGDIVDRQIRSKQNWNLLPTQAIYASVLPGELMRGYMSQFPVFPSWLGKFSSTG
KHDRIIQELAMHMSLRTQTCKRTVNMEYLSYLRDALVQPLKDFGADGVQQAITFMDSYCL
MKEDVENIMEISTWGGKPSPFSKLDPKVKAAFTRAYNKEAHLTPYSLSSVKASKRQSGSA
ATLDLSEDLNVEEIQSDEDEQDTVDSDAMIKQKKVKSSKLPKREKNEETTKKEGKRKQKT
RHLE
NT seq
3435 nt
NT seq
+upstream
nt +downstream
nt
atgtctgctaaccctggaggtagtgataccaaccaggatatccggaaattctttggtgtt
gtacctcctgcaaagcgacaagaacgtgagactgtgaaaaagagtgaaaaaattaaaaat
ggtgaaggaccctcaaatgggaagaaaagggaaaaggagtctaaggtgaataattcaccc
agtgaagatgattacaaacaaaagcggatgaaaaagaagagaagaataatctatgattca
gattcagaagaggaggtgcagtcagtgaaaaaatccaagaagtcacctgagaaaaaagca
gctacttcaaaacttggtaaagttctaaagcaggatcctgttgtttatatttcagagaca
gatgaggatgatgattttgccaataaaagaatttccctgaagccgaaggagaatgggaca
tcagcgactggtcgtccaggaacaaatactgtgaaaaaagaagaggtaaaaccacaagct
aaaagcaaacccctgtctccagtgaaacagactcccacctctgcacttgatttctttggg
acaaggagtgtccaacgctcagaaaagaaactggtggcaagtaaaaggaaagagccttca
cagagcagtgacagcacactagatgatgaggccatcgctaggcaactgcagcttgaagaa
gactcagagctggagagacagctgcatgaagatgaagaatttgctagaactctggccatg
ttggatgaaacaccgcagaagaaaaaggctcggaaagatacagaaggagagcaaacagta
ctgagcatcaacagcagccctaatacaacagcagctggatataagcagtcagaaagagtg
aaagtaacagactcaactggtgcagccaagaattactctgtaaagccgcaagctaaaccc
gaacagttgaaaggttctcatttatccccacaatcatctgatggtaaaaaagaagtgatg
gctgaaaaggaaagaggtgctcaaaattcactatcaagggagaaagcggcttcggggaaa
gaagagaagacaacaccaaagaaggagaaagtttctcccaagaagactgagtctataagt
cctgaggactctgaaaagaagcgaaacaactaccaagcttaccgaagcttccttaatcgt
gagggtccaaaagcactgggttctaaagagatacctcagggagctgaaaactgcttggag
ggtctgacatttgtaattacgggtgttctggagtgtattgagagagatgaggccaagtct
ctgattgaacgctacggaggaaaagtaactggcaatgtcagcaagaagacaaattacctg
gtggtggggcgagactgcggccagtccaaatgtgagaaggcatcaactttaggtacaaaa
gttattgatgaggatggtctgtttgatcttattcgaactatgccaggtaaaaagtccaag
tatgagctggcagctgaagcagaggttgtattttttctttaaaaacccaaaaagacaccg
cagaaagctgaagctggaaaaaggaattttagccccttcaaaagggaagctgataataaa
aaatacaagtctactcctgaaaaaggagatagctccagatttgtcaagaaagaaaccact
gctgttcgaaaacttgcggactttagacataagactgtagaggagaaaggagccccaaaa
cctacgggaaacttggtttctgaggttaatgaagatggcacagagagattgctgtgggta
gataaatataagcctgtatctcttaaggcaattattggacagcagggtgagcaaagctgt
gccaataaacttctccgatggctcagaaattggcacaagaacacctttgaagatggacaa
gcaaaacccagtaaaactggaagcaaagatgatgggacaggctttaaagcagcattactt
tctggtccacctggagttggtaaaactactacagctgctttggtttgtaaggaactgggg
tatagctacgtggagctgaatgccagcgacactcgcagcaagaacagtctaaaggaagta
gttgctgaatcgcttaacaacaccagcatcaaagacttctgttctggtgcatcttcatca
gttagcgggaaacatgtattgatcatggatgaagtggatggtatggcaggcaatgaagac
agaggagggattcaggagttgataggtttgatccgacacacgaagatacccatcatttgc
atgtgcaatgatcgcaaccatcctaaaatgcgctccttggtccactactgtttggatctt
cgttttcaaagacctcgtctagaacagatcaaaggtgccatgatgtctattgcatttaaa
gaaggtttaaaaattcccccacctgctatgcaagagataatcctggcagcaaaccaggac
atcagacaggttttacataatcttaatatgtggtgtgcaaaagacaaatcactgacttat
gatgaggctaaaactgatgccagcagagccaaaaaggacatcaaactgggtccttttgat
gttgtccggaaggtttttgctgctggagaggaggctgctcgtatgtctcttatagacaaa
tcagatcttttcttccatgattattcactagcacctctctttgtccaggagaattatgtg
catgtgaaaccagctgctgctggaggtaatttaaaaaagcacttggtgctcttgagtaga
gcagctgatagtatatgtgatggtgatatagtggacaggcagattcgtagcaagcagaat
tggaatcttcttccaacacaggctatttatgcaagtgttctcccaggggagctgatgagg
ggttacatgtcccagtttcctgtctttcccagctggctggggaaattttcatctacaggc
aaacatgatcgtatcattcaagaactggcaatgcacatgagtctcagaactcagacatgc
aagaggacagtaaatatggaatatttgtcatatttgcgagatgcacttgtccagcccttg
aaagactttggagcagatggtgtacaacaagctataacatttatggattcttactgcttg
atgaaagaagatgttgaaaatatcatggaaataagcacgtggggaggcaaacccagtcct
ttttcaaagctggatcccaaggtcaaagcagcttttactcgtgcctacaacaaagaggca
catctgactccgtattcacttagttctgtcaaggcatctaaaaggcagtcaggatctgca
gcgaccttagatctgagtgaagacttgaatgtggaagagatccaatctgatgaggatgag
caggatactgttgacagtgatgcaatgattaagcaaaaaaaggtgaagtcttccaagctg
ccaaaaagagagaaaaatgaagaaacaacaaaaaaagaaggaaaaagaaaacagaaaact
agacatttagaataa
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integrated database retrieval system
