Cyanistes caeruleus (blue tit): 111928237
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Entry
111928237 CDS
T05602
Symbol
HTT
Name
(RefSeq) huntingtin isoform X1
KO
K04533
huntingtin
Organism
ccae
Cyanistes caeruleus (blue tit)
Brite
KEGG Orthology (KO) [BR:
ccae00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccae03019
]
111928237 (HTT)
04131 Membrane trafficking [BR:
ccae04131
]
111928237 (HTT)
03029 Mitochondrial biogenesis [BR:
ccae03029
]
111928237 (HTT)
Messenger RNA biogenesis [BR:
ccae03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
111928237 (HTT)
Membrane trafficking [BR:
ccae04131
]
Endocytosis
Rab GTPases and associated proteins
Rab associated proteins
111928237 (HTT)
Mitochondrial biogenesis [BR:
ccae03029
]
Mitochondrial quality control factors
Regulator of mitochondrial biogenesis
Other regulator of mitochondrial biogenesis
111928237 (HTT)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Htt_C-HEAT
Htt_N-HEAT
Htt_bridge
Htt_N-HEAT_1
HEAT
HEAT_2
HEAT_EF3_N
Rad26-like_helical_rpts
Motif
Other DBs
NCBI-GeneID:
111928237
NCBI-ProteinID:
XP_023781355
LinkDB
All DBs
Position
4
AA seq
3096 aa
AA seq
DB search
MATMEKLTKAFESLRSFQQQQGPATLPEESLQRPKKELSATKKDRVNHCLTICENIVAQS
LRNSPEFQKLLGIAMELFLLCSEDAESDVRMVADECLNKVIKALMDSNLPRLQLELYKEI
KKNGASRSLRAALWRFAELAHLVRPQKCRPYLVNLLPCLTRISKRPEESVQETLAAAIPK
IMAAFGNFANDNEIKVLLKAFIANLKSSSPTIRRTAAGSAVSICQHSRRTQYFYAWLLNV
LLGLLVPVEDDRPTLLILGVLLTLRYLIPLLQQQVKDTSLKGSFGVTRKETEISPSPEQL
IQVYELTLHYTQHQDHNVVTGALELLQQLFRTPPPELLHALTACGGIAQVSVSKDEPASR
SRSGSIVELIAGGGSSCSPVLARKHKGKVLLGEEEGLDDDSETRSDVSAASFAASVKGEI
TSELASSSGVSTAGSGGSSAADPTGHDIITEQPRSQHTLQSDSVDLASCDLTSTATEGED
DEVLSRSSSQISAVQSDATMDLNDGTQASSPISDSSQTTTEGPDSAVTPSDSSEIVLEGA
EGQYSGMQIGQLQDEEDEAGNILQDDSSDSFRSSSLALQQSHLLKTMSHSRQPSDSSVDR
FTSKEDSADAGDHESKPSRVKGDIGHYTDRDSAPLVHCVRLLSASFLLTGDKGALVPDRD
VRVSVKALAVSCVGAAVALHPESFFSKLYKTPLEAMGEEYEEQYVSDILNYIDHGDPQIR
GATAILCGTIVNSILIKSRFDVEKWLMNVRSSTGNLFSLIDCIPLLQKTLKDESSVTCKL
ACTAVRHCIMSLCSSSYSELGLQLIVDLLALKNSSYWLVRTELLETLAEVDFRLVNFLEG
KAESLHRGIHHYTGLLKLQERVLENVVISLLGDEDPRVRHVAAASLMRLVPKLFYNCDQG
QADPVVAVARDQSSVYLKLLMHETQPPSHFAVSTITRTYRGYNMLQSPTDVTMENNLSRV
IAAISHALTISTTRALTFGCCEALCLLSTTFPVCTWSVGWHCGVSQPSSSDEAQKGCTIG
MAGLVLSLLSSAWFPLDLSAHQDALILAGNLLAASAPKCLKNPWSAEEDANQGAAKQEEP
WPALADRALVTLVEQLFSHLLKVINICAHVMDDVPPGPAVKAALPSLTNPPSLSPIRRKG
KERESVEQASVPMSPKKSGEASPASRQTDATGPVPTSKSSSVGSFYHLPSYLKLYDVLKA
THANYKVTLDLQNTNEKFGCFLRSALDVLSQILELATLQDIGKCVEEILGYLKSCFNREP
TMATVCVQQLLKTLFGTNLASQYEGWSSNPNKAQGKAQRLGSSNLRPGLYHYCFMAPYTH
FTQALADASLRNMVQAEQEHDASGWFDVLQKVSTQLKTSISSAAKHRADKNAIHNHIRLF
EPLVIKALKQYTTTTSVQLQRQVLDLLAQLVQLRVNYCLLDSDQVFIGFVLKQFEYIEVG
QFRESEAIIPNIFFFLVLLSYERYHSKQIIGIPKIIQLCDGIMASGRKAVTHAIPALQPI
VHDLFVLRGTNKADAGKELETQKEVVVSMLLRLIQYHQVLEMFILVLQQCHKENEDKWKR
LSRQIADIILPMLAKQQMHIDSHDALGVLNTLFEILAPSSLRPVDMLLRSMFVTPKTMAS
VSTVQLWISGILAILRVLISQSTEDIVLSRIQELSFSPYLISCQAINRLRCGENNGSTPE
DRTEVKQVKYPPEETFSRFLLQLVGILLEDIVTKQLKVDMNEQQHTFYCQELGTLLMCLI
HIFKSGMFRRITAAATRLFTGDGSDGSFYTLESLSDLVQSMIPTHPSLVLLWCHILLLVN
YTNYNWWSEVHQTPKRHSLSTTKLLSPHISGDSDESDLESKRGMCNREIVRRGALILFCD
YVCQNLHDSEHLTWLIVNHVQDLINLSHEPPVQDFISAVHRNSAASGLFIQAIQSRCENL
AAPTTLKKTLQCLEGIHLSQSGAVLTLYVDKLLCTPFRVLARMVDTLACRRVEMLLAATL
QNSIAQLPVEELDRIQEYLQNSGLAARHQRLYSLLDRFRLMVAPDTTSPSPLVTSHPLDG
EDQPALENVVLDKDWYVSLVRSQCYIKSDSALLEGAELVNRIPQPDLNSFMTSKEFNLSL
LAPCLSLSMNEISRDQKSSLFETARKVTLDHVSSAVQNLPANHQVFQPLLPTEPSAYWKK
LSDIFGDEVMYQSVMTLCRALAQYLLLLSKLPAGLRVPPDKEDDILKFVVMSVEALSWHL
VHDQIPLSVDLQAALDCCCLTLQQPNLWSLLSSAAHVTYACSLINCIRFIIEAVAVEPGN
QLLSPERKKNTSKPLSEGEIDSNVQKTKHIIAACEMIAEMVECLQTVLSLGHKRNSSIPA
FLTPVLKNIIISLARLPLVNSYTRVPPLVWKLGWSPKPLGDFGTVFPEIPVEFLQEKEIF
KEFIYRINTLGWISRTQFEETWATLLGVLVTQPIVMDQEENQQEEDTERTQINVLAVQAI
TSLVLSAMTIPVAGNPAVSCLEQQPRNKALKALDTRFGRKLSVIRGIVEQEIQAMVSKRD
NIATHHLYQAWDPVPSLSPATTGALISHEKLLLQINTEREIGDMDYKLGQVSIHSIWLGN
NITPLREEEWGEDEEDENDVPAPSSPPTSPINTRKHRAGVDIHSCSQFLLELYSQWILPS
NPSKRTPVILISEVVRSLLAVSDLFTERNQFEMMYTTLTELRKVHPSEDEILVQYLIPAT
CKAAAVLGMDKAVAEPVSRLLESTLRSTHMPSRIGALHGILYILECDLLDETAKQLIPII
SEYLLSNLRGVAHCVNIHNQEHILVMCAAAFYLIENYPLDVGPEFSAGIIQMCGVMVSGN
DESTPSIIYHCVLRGLERLLLSEQLSRLDSESLVKLSVDRVNVQSPHRAMAALGLMLTCM
YTGKEKISPSRIPDANPGAPDSESVIVAMERVSVLFDRIRKGFPFEARVVARILPQFLDD
FFPPQDVMNKVIGEFLSNQQPYPQFMATVVYKVFQTLHSTGQSSMVRDWVMLSLSNFTQR
TPVAMAMWSLSCFFVSASTSQWISAILPHIISRMGKSEQVDVNIFCLVAIDFYRHQIDEE
LDRRAFQSVFEVVASPGTPYHRLLACLQNVHKVTAC
NT seq
9291 nt
NT seq
+upstream
nt +downstream
nt
atggccaccatggagaagctgacgaaagccttcgagtcgctgcgctccttccagcagcag
cagggcccggctaccctccccgaggaatcgctccagagaccaaagaaagagctttcagct
accaagaaagatcgagtgaatcattgtctaacaatatgtgaaaatatagttgctcagtca
ctaagaaattctccagaatttcagaaactgctgggcattgctatggagctctttctcctc
tgcagtgaggatgcagaatctgatgtccggatggttgcagatgaatgccttaataaagtt
attaaagctttgatggattccaatcttcccaggttacagttggaactgtataaagaaatc
aaaaagaatggtgcttcaagaagtctgcgtgctgcactctggagatttgctgagcttgcc
catctagttcggcctcaaaagtgcaggccatacttggtgaaccttttgccctgtctaaca
cggataagtaagagacctgaagaatcagtacaagagacgctggctgcagcaatacccaaa
atcatggcagcttttggcaattttgcaaacgacaatgagattaaggttttgttgaaggct
ttcattgctaatcttaagtccagttcccccactatccgtcgaacagcagcaggatcagca
gtaagcatctgtcaacattcacgaagaacacagtatttttatgcctggttattgaatgtg
cttttaggcttgttggttcctgtagaagatgaccgtcctactcttttaattctgggtgtt
ttacttacactaaggtatctcatacctttattgcaacaacaagtaaaagataccagcctg
aaaggcagttttggtgtaacaaggaaagaaacagagatttcaccttcaccagaacaactt
atacaggtttatgaactgactctgcactatacccagcatcaggaccataatgttgtgact
ggagctctagaactgctccagcagctctttagaacacccccccctgaactgctccatgcc
ttgactgcctgtgggggcattgctcaggtcagtgtatccaaagatgaacctgccagcagg
agccgcagtgggagcatagtggaacttatagctggaggggggtcttcatgcagccctgtt
cttgcaagaaagcataaaggtaaagtacttcttggtgaagaggaaggcttggatgatgat
tctgaaacccgatctgatgtcagcgctgcatcgtttgcagcttctgtgaagggcgagata
accagtgaactggcttcttcatcaggtgtgtcgacagctgggtcgggcgggagctcagct
gcagatcccacgggacacgacatcatcacggagcagccccgttcccagcatacgctgcag
tcagactctgtggatctggcaagctgtgacttgacaagtacagctactgaaggggaagat
gatgaagtgctcagtcgaagctccagccagatcagtgctgtccagtcagacgccactatg
gatttgaatgatggcacgcaggcttcctcaccaattagtgatagctctcagactactaca
gaaggtccagactctgctgtaaccccttcggacagttctgaaattgttttggagggtgct
gaagggcagtattctggaatgcaaattgggcaactacaagatgaggaagatgaagctgga
aatattctccaagatgattcatcagactccttcagaagttcttctcttgctcttcagcag
tctcacctgctgaaaaccatgagccatagtaggcagccttctgatagcagtgtggatcga
tttacatccaaagaagattcagcagatgctggtgatcatgagagcaagccctccagggta
aagggggacattggacactatactgacagagactctgctcctttggtgcactgtgtgagg
ctgctgtcagcttccttcctgctcactggggacaaaggagctttagttcctgatagagat
gtgagagtcagtgtaaaagccctggcagtaagttgtgttggagcagctgttgcacttcac
cctgagtctttcttcagcaaactgtataaaacacctctggaggcaatgggagaagagtat
gaggagcaatatgtgtcggacattctgaactatattgatcatggagatccccagattaga
ggagctactgccattctctgtggaacaattgtcaactccattctaattaaatcccgcttt
gatgtggaaaaatggctaatgaatgtcagaagctcaacaggaaatctcttttccttgata
gactgcatacctctgttacagaaaacattgaaagatgaatcctctgttacatgcaaactg
gcttgtacagctgtgaggcattgcatcatgagcttatgcagtagcagttacagtgaacta
ggtttgcaattgatcgttgacctccttgctctgaagaacagctcatactggcttgtaagg
acagaacttctggaaacacttgcagaggtagattttcggctagtcaacttcttggaagga
aaggctgagagtttgcacagaggtattcatcattatactggtctattaaagcttcaggag
agagtacttgaaaatgttgtaataagtttgctcggagatgaagatccaagagtgagacac
gtggctgcagcttcattaatgaggcttgttccaaagcttttttataactgtgatcaagga
caggctgacccagttgtggcagtggcacgagaccaaagcagtgtctacctgaaactcctc
atgcatgaaacgcagcccccatctcactttgcagtgagcactatcaccagaacatacaga
ggttacaatatgctgcaaagtccaacagatgttactatggaaaacaacctttcaagggtt
attgcagcaatttctcatgcactgacaatatccactacaagagcacttacgtttggctgc
tgtgaagctttgtgtcttctctccacaacatttccagtctgcacctggagtgtgggatgg
cactgtggtgtttcccagccaagttcttcagacgaagctcagaagggctgcaccattggt
atggctggcttggtcctgtctctcctttcatcagcgtggttcccactggacctctcagca
catcaggatgctttgattttggctggaaacttgcttgcagcaagtgctcccaagtgctta
aagaatccctggtctgctgaagaagatgcaaaccaaggtgctgcaaagcaggaggagccc
tggccagctctggcggatcgagctcttgtcactttagtagaacagctcttttctcatctt
ctgaaggtcattaatatttgtgcacatgtgatggatgatgttcctcctggtccagcagta
aaggcagcattaccttctctcacaaacccaccttctcttagtccgattcggagaaagggg
aaagagagggagtctgtggaacaggcatctgtgcccatgagccctaaaaagagtggtgaa
gcaagtccagcttctaggcaaactgatgctacaggacctgttccaacaagtaaatcatct
tcagtaggaagtttttatcatcttccatcatacctgaagttatatgatgtcttgaaggca
actcatgctaattataaggttactttggatctccagaacactaatgagaagtttggatgt
ttcttacggtctgccttagatgttctctctcaaatcttggaacttgctactcttcaggac
attggaaagtgtgtggaagaaattttgggatatctaaaatcatgtttcaacagagagcca
acaatggcaacagtttgtgtacagcagttattgaaaacattgtttgggacaaatctggct
tctcagtacgagggctggtcttcaaaccccaacaaagctcaaggcaaagctcagcgcttg
ggttcctccaatctgaggcctggtctctaccactattgcttcatggcaccgtacacacac
ttcacacaggcccttgctgatgccagtctgaggaacatggttcaggctgagcaggagcat
gatgcttcaggatggtttgatgtgctgcagaaagtttctacacagctgaaaactagcatt
tccagtgcagcaaaacatcgtgctgataagaatgctattcacaatcacattcgtttattt
gaaccccttgtcataaaagcattgaaacaatacacaacaacaacgtcagtacagctgcag
agacaagttctagacttgcttgctcaactggttcagctgcgagttaactactgtcttctg
gattctgatcaggtgtttattggatttgtgctaaagcagtttgaatacattgaagtagga
cagttcagggagtctgaagcaattattcctaacatattctttttcctggtgttgctgtct
tatgagcgatatcattccaaacaaataattggaattcccaagatcattcagctgtgtgat
ggtatcatggccagtgggaggaaagctgttacacatgcaataccagctctacaacccatt
gttcatgatctgtttgtgttaagaggaacaaataaagctgatgctggcaaagaactggaa
actcagaaggaagttgtagtgtcaatgctgctgagacttatccagtaccatcaggtgcta
gaaatgttcatcttggtactgcagcagtgtcataaagaaaatgaagacaaatggaagaga
ttgtcccggcaaatagctgacatcattctcccaatgcttgcaaaacaacagatgcatata
gactctcatgatgctttgggagtattgaacactttgtttgagattttggccccttcatct
cttcgccctgtggacatgcttttaaggagtatgtttgttactcctaaaacaatggcatca
gtgagcactgtccagctgtggatttctggaattttagctatcctacgagttctgatttca
cagtcaacagaagacatcgttctatcccgtatacaagagctttccttctcaccatatttg
atttcatgtcaagcaatcaacagactgagatgtggagaaaataatgggtccacaccagag
gatcgcactgaggtcaaacaggtgaaatacccacctgaagagacgttttccagattctta
ctacaactggttggcattctgctggaagacattgttaccaagcaattaaaagtggacatg
aatgagcagcaacacactttctactgccaggagctgggcacgctgcttatgtgcttaatt
catatcttcaaatcagggatgtttagaagaatcacagctgcagccaccagactttttaca
ggagatggatctgatggtagtttctatacacttgaaagtctgagtgaccttgttcagtcc
atgattcccactcatccttctttagttcttctctggtgtcacatcttgcttcttgtcaat
tacactaactacaactggtggtcggaagtgcatcaaaccccaaagcgacacagcctttct
actactaaattgcttagccctcatatatctggagacagtgatgagtctgacttggaatct
aagcgtggcatgtgcaatcgtgagatagtgagaagaggagcactcattctcttttgtgac
tacgtttgtcaaaacctacatgattcagagcacctgacctggcttattgtgaatcatgtt
caagacttgattaatctgtcccatgagcctccagtacaagattttatcagtgctgttcac
aggaattcagcagccagtggtctcttcatccaggccattcagtcacgctgtgagaatctt
gcagctcccacaactctgaagaagaccttgcagtgtttggagggaatccacctgagccag
tccggggctgtgctgacgctgtacgtggacaagctgctgtgcactccgttccgagtgctg
gctcgcatggtggacaccctggcctgccgacgcgtggagatgctgctggcagcaactctg
cagaacagcattgctcagttaccagttgaagaactggatagaattcaggagtaccttcaa
aacagtggattagcagcaagacaccaaagactctactcactcttggataggtttcgtctt
atggtggcaccagacacaaccagtccttcacctctggtgacctcacacccactagatgga
gaagaccaaccagctttagagaatgtcgttctagacaaagactggtatgtgtcactagtg
cggtcacagtgttacatcaagtctgactcagcactgctagaaggagcagagctggtaaat
cggattcctcagcctgacctgaactccttcatgaccagcaaggaattcaacctaagcttg
ttagcaccttgtttaagccttagcatgaatgagatctcaagggatcagaagagcagcctc
tttgaaacagctcggaaggtgactctggatcatgtgtcttctgctgtacaaaaccttcca
gccaaccaccaggtttttcaaccactattgccaactgagccatcagcctactggaaaaaa
ctgagcgatatctttggagatgaggtgatgtatcagtctgtgatgacactttgtcgtgca
ctggctcaatatttgttgttactctcaaaactaccagctggtctccgtgttcctcctgac
aaagaggatgatatcctgaaattcgtagtgatgtcagtagaggcactgtcatggcattta
gtgcatgaccagattccattaagtgtagatcttcaggctgctctggactgttgctgtctc
acactacagcagcctaatctctggagtttgttgtcttctgcagctcatgtgacatatgct
tgctctttaattaactgcattagatttatcatagaagcagttgctgtggaacctggtaat
caacttctgagtcctgaaagaaagaagaatacttcaaaacctttaagtgagggagaaata
gattcaaatgtacagaaaacaaagcacattattgcagcatgtgaaatgatagctgagatg
gtggaatgcttacagactgtcttgtcactggggcacaaaagaaacagcagcatccctgca
tttctcactcctgtcctcaagaacatcatcatcagtttagcaaggctgcctctagtgaat
agctacaccagagtacctcctttggtctggaaattaggctggtcaccaaagcctttaggt
gactttggcacagtttttcctgaaattccagtagaatttcttcaagaaaaggaaattttt
aaggagttcatctatcgcattaatacacttggatggatcagccgtactcagtttgaagag
acttgggctactctgcttggtgtgctcgtaactcagcccattgtaatggaccaagaggag
aaccagcaagaggaagatacagagaggacccaaatcaatgttcttgcagtgcaagccata
acctccctggtgctgagtgcaatgaccatacctgttgcaggcaatccagcagttagctgt
ttggagcagcagccccgtaacaaagctttaaaagctctggacacaaggtttgggaggaag
ctaagtgttatcaggggaattgttgaacaggaaatccaggcaatggtgtctaagagagat
aatattgctactcatcacttataccaagcctgggaccctgttccatcactttctcctgca
actacaggtgctcttatcagccatgagaaactcttactgcagatcaatactgaacgagaa
ataggagatatggattataaattgggacaggtctctatacattccatatggttaggaaat
aatatcactcccttaagagaagaagagtggggtgaggatgaagaagatgagaatgatgta
cccgctccttcctcaccaccaacctctcctatcaacaccaggaaacaccgggctggtgta
gatatccattcttgttctcagttcttgcttgaactgtacagtcagtggatattgccatcc
aaccccagcaagagaacaccagttattttgatcagtgaagtggtgcgatcacttttggca
gtgtcagacttatttacagaaaggaatcagtttgagatgatgtacacaacactgacagag
ttgcgaaaggtgcatccttcagaagatgagattcttgtacagtatttgataccagctact
tgtaaagctgctgctgttcttggaatggataaagctgtggctgaaccagtaagtcggctg
ctggaatcaaccctaagaagcacccatatgccgagtcggattggagctctgcatggaatt
ctttatatccttgagtgtgacttgcttgacgagacagcaaagcaactcattccaattatc
agcgagtatctgctctccaatttgagaggagtagcacattgtgtgaatatccataaccaa
gagcacattttggtaatgtgtgcagctgctttctatttgatcgagaattacccacttgat
gtagggcctgaattctctgcaggaattatacagatgtgtggagtcatggtttctggaaat
gatgaatcaacaccatccattatttatcactgtgtcctgagagggttggaacgactcctc
ctttcagagcagctttccaggctggacagtgagtcgctggttaaactgagtgttgacagg
gtgaatgtgcagagcccccacagagccatggcagccctgggattaatgctgacttgcatg
tacacaggaaaggaaaaaatcagccccagccgtatcccagatgcaaatcctggtgctcct
gacagtgaatctgtgattgtcgctatggaacgagtatctgtcctttttgataggatcagg
aagggatttccttttgaagctcgagtagtggctcggattcttccacagttccttgatgat
ttcttccccccgcaagatgtaatgaacaaagtcattggggaatttttgtccaatcagcag
ccatacccacaattcatggcaacagtagtttataaggtgttccagacactgcatagcact
ggacaatcgtcgatggtccgtgactgggtgatgctctctctctctaatttcacacaaaga
acgcctgtggcaatggcaatgtggagtctttcctgtttttttgtcagtgcttccaccagt
caatggatttcagcaattcttccacatattatcagcagaatgggaaaatcagagcaagtg
gatgttaacatcttctgtttggttgccatagacttctaccgacaccagatcgatgaagaa
ttggatcggagagccttccagtcggtgtttgaggtggtagcatctccaggaaccccatac
catcgcctactggcttgtttgcaaaatgtccacaaggtcacagcatgttga
DBGET
integrated database retrieval system
