Cyanistes caeruleus (blue tit): 111928658
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Entry
111928658 CDS
T05602
Symbol
UPF3B
Name
(RefSeq) regulator of nonsense transcripts 3B
KO
K14328
regulator of nonsense transcripts 3
Organism
ccae
Cyanistes caeruleus (blue tit)
Pathway
ccae03013
Nucleocytoplasmic transport
ccae03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ccae00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
111928658 (UPF3B)
03015 mRNA surveillance pathway
111928658 (UPF3B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccae03019
]
111928658 (UPF3B)
Messenger RNA biogenesis [BR:
ccae03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
111928658 (UPF3B)
mRNA cycle factors
P-body specific factors
111928658 (UPF3B)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Smg4_UPF3
DUF6980
Motif
Other DBs
NCBI-GeneID:
111928658
NCBI-ProteinID:
XP_023781823
LinkDB
All DBs
Position
4
AA seq
382 aa
AA seq
DB search
MFSRAYINFKNQEDIVLFRDRFDGYVFVDHKGQEYAAIVEFAPFQKAAKKKSKKKDAKTG
TIEDDPEYKKFLESYSADDEKLTSTPETLLEEIEARNKELIAKKTTPLLNFLKNKQRLRE
EKREERRRRELERKRQREEERRKWKEEERRKRKEAEKLKKVDRCPEKERDRSKEEPKIKL
LKKPEKDEKDLERKEKSKRLEKETLREEKNASSASAKRSDGETKEEKAKKSEDECVKDYR
DRDRDFDRDREYERAQREKLRRQEEERRRQKERYEKEKVFRRKEEEVKKERDLLREKGKK
SDLTDFTSSMDKSEKVTKDDKKEDTIKRDRIRNKDRPAMQLYQPGARSRSRLCQYEDSAA
KPPDQGVDKKQEGETSHTKEEE
NT seq
1149 nt
NT seq
+upstream
nt +downstream
nt
atgttctcgagagcatacatcaacttcaagaaccaggaagacatagtcctcttcagggat
cgcttcgacggctacgtttttgttgatcacaaaggtcaggaatatgctgccatagttgag
tttgcacctttccagaaagctgcaaaaaagaagagtaagaaaaaggatgccaaaactgga
actattgaagatgatccagaatacaagaagtttttggaaagttacagtgcagatgatgaa
aaattaacctccactcctgaaactttattggaggaaatagaggcaagaaacaaagagcta
atagctaaaaagactactcctttattgaacttcttgaaaaataaacagagactgagagaa
gaaaaaagagaggagagaaggaggagagaattagaaagaaaaagacaaagagaagaagaa
agaagaaaatggaaagaagaggagaggaggaagagaaaagaagcagaaaaattgaagaag
gtagacagatgcccagaaaaagaaagagacagatcaaaagaagaaccaaagattaagcta
cttaagaagcctgaaaaagatgaaaaagacttggagagaaaagaaaaatccaagagactg
gaaaaagagactctgagggaggaaaaaaatgcgagtagtgcatctgccaaacgatctgat
ggggagacaaaagaagagaaggcaaaaaaatcagaagatgagtgtgtaaaggactacagg
gaccgagatagagattttgacagagacagagaatatgagagagcacagagagaaaaactg
agacgccaagaagaggagcgtcggaggcagaaagagcgctatgagaaagagaaggttttt
agaagaaaagaggaagaggtgaaaaaggagagagacttactcagagaaaagggaaagaaa
agtgatcttacagactttaccagcagcatggacaaatctgagaaagtaaccaaagacgat
aaaaaagaggatacaattaagagggatcgtatcagaaacaaggatcgcccagcaatgcag
ctgtaccagcctggagcccgaagccggagcagattgtgtcagtatgaagacagtgctgca
aagcccccagatcagggagtggataagaaacaagagggtgagaccagtcacacgaaggaa
gaggagtga
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