Cyanistes caeruleus (blue tit): 111928788
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Entry
111928788 CDS
T05602
Symbol
POLR2B
Name
(RefSeq) LOW QUALITY PROTEIN: DNA-directed RNA polymerase II subunit RPB2
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
ccae
Cyanistes caeruleus (blue tit)
Pathway
ccae03020
RNA polymerase
ccae03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ccae00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
111928788 (POLR2B)
09124 Replication and repair
03420 Nucleotide excision repair
111928788 (POLR2B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccae03021
]
111928788 (POLR2B)
03400 DNA repair and recombination proteins [BR:
ccae03400
]
111928788 (POLR2B)
Enzymes [BR:
ccae01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
111928788 (POLR2B)
Transcription machinery [BR:
ccae03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
111928788 (POLR2B)
DNA repair and recombination proteins [BR:
ccae03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
111928788 (POLR2B)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_5
RNA_pol_Rpb2_4
DUF5817
Motif
Other DBs
NCBI-GeneID:
111928788
NCBI-ProteinID:
XP_023781955
LinkDB
All DBs
Position
4
AA seq
1148 aa
AA seq
DB search
MYDADEDMQYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVE
DAPPIDLQAEAQHASGEVEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTY
SAPLYVDITKTVIKEGEDQLQTQHQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLD
PGGYFIINGSEKVLIAQEKMATNTVYVFAKKDSKYAYTGECRSCLENSSRPTSTIWVSML
ARGGQGAKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEM
VKPSLDEAFVIQEQNVALNFIGSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETK
KAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQ
KFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLS
HLRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSP
ILEFLEEWSMENLEEISPAAIADFLSXMDIIVSEVSMIRDIREREIRIYTDAGRICRPLL
IVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMTPDDLQEKG
VAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDT
LAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFF
RSVFYRSYKEQESKKGYDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGDDVI
IGKTVTLPENEDELESTNRRFTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSV
RIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQ
GKVSANKGEIGDATPFNDAVNVQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPT
YYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRER
LFEASDPYQVHVCNLCGIMAIANTRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMS
IAPRMMSV
NT seq
3447 nt
NT seq
+upstream
nt +downstream
nt
atgtacgacgcggacgaagatatgcaatatgacgaagacgatgatgaaatcacccccgat
ctgtggcaagaagcctgctggattgttattagctcctattttgatgaaaagggtttagtc
aggcaacagttggattcctttgatgagtttattcagatgtctgtgcagagaattgttgaa
gatgctccaccaattgatttacaagctgaagcccagcatgcctcaggagaagtggaagag
ccacctcggtatctgttgaagtttgaacaaatctatctctccaaacctacgcattgggaa
agagatggagcaccctcacctatgatgccaaatgaagccagactgagaaacctgacgtat
tctgcccccttgtatgtggatataactaaaacagttattaaagaaggggaggaccagttg
cagacccagcatcagaaaacctttataggaaaaattcctatcatgttgcgttccacatac
tgtttgctgaatggcttaactgaccgtgatctttgtgagctgaacgagtgtccacttgat
cctggtggctacttcatcattaatggatcagaaaaggttctgattgcccaggagaaaatg
gctacgaacacagtgtatgtgtttgcaaagaaagattcaaaatatgcctacacaggagag
tgtagatcttgtctggaaaattcctctcgaccaactagtactatatgggtcagcatgctg
gccagaggtggacagggtgcaaagaagagtgccattggtcagcgcatagtagcgactctg
ccttatatcaaacaggaggtccccatcatcattgtcttccgtgcactcggctttgtgtct
gacagggacattctagagcacatcatatatgattttgaagacccagaaatgatggaaatg
gtcaaaccttctttggatgaagcctttgtcattcaggagcaaaatgttgccctaaacttc
attggctcaagaggtgccaagccaggtgtcaccaaagaaaagagaatcaagtatgccaaa
gaagtcttgcagaaggaaatgctccctcacgttggtgtcagtgacttctgtgaaactaaa
aaggcctattttctagggtatatggttcatagactgttgctggcagcactgggaagaaga
gagctggatgacagagatcattatggcaacaaaagactggatcttgctgggccactcttg
gctttcctgttcagaggaatgttcaagaatttgctgaaggaagtgagaatatatgcacaa
aagttcattgacagagggaaagatttcaacttggagttggcaattaaaacaagaattatt
tcagatggtttgaaatattcattggcaactggaaactggggtgaccagaagaaagctcat
caggccagagcaggagtatctcaggtgttgaaccgcctgacttttgcatccactctctcc
cacctgaggcgcctgaattctccgattgggagagacggaaaactggccaagccgcggcag
ctgcacaacaccctgtggggaatggtttgccctgctgagacccctgagggtcatgcagta
ggacttgtgaagaacttagccctgatggcttacatttctgtggggtctcagccatcccca
attctggaattcttggaagagtggagtatggaaaacctggaagaaatatctccagcagca
atagctgattttttatcctagatggacatcattgtgtcagaggtctcaatgattagagat
attcgcgagcgagaaatccgcatctacactgatgcaggcagaatttgtcggcccctttta
attgtagagaaacagaagttgctgctgaagaaaaggcacattgaccaactgaaggaacga
gagtataacaattacagttggcaggatcttgtggccagtggtgtagtagagtacattgac
accctggaagaagagaccgtgatgctggcaatgactccagatgacttgcaagagaaaggt
gtggcatattgttcaacatacacacactgtgagattcacccatccatgatcctgggagtg
tgtgcatctattatccctttccctgatcacaaccagtctcccaggaacacataccagtct
gctatgggtaagcaggctatgggagtctacatcaccaacttccatgtccgtatggatacg
ctggcacacgtgttgtattatccccagaagcccctggtaacaacgcgctccatggagtac
ttgaggttcagagagttaccagcaggtatcaactcgattgtagccattgcatcatacaca
ggctataaccaggaagactctgtcattatgaaccgttctgctgttgacagaggctttttc
aggtctgtgttctaccgctcatacaaagagcaggagtctaagaaagggtatgaccaagag
gaagtttttgaaaagcctacacgtgaaacttgccaaggtatgagacacgcaatctatgac
aaacttgatgatgatggtttgatagcccctggggtacgtgtgtctggggatgatgtcatc
attggcaaaacagtcacactgccagaaaatgaagatgagctggaaagcaccaacagacgc
ttcaccaagagagactgcagcaccttcctgcggaccagtgagactgggattgtagatcag
gtcatggtaaccctgaaccaggaaggatacaaattctgcaagatcagggtgcgttctgta
agaattccacaaattggagataaattcgctagcagacacggtcagaaaggaacctgtggt
atccagtacaggcaagaggatatgcccttcacgtgtgaaggcatcacacctgatatcatt
atcaacccccacgccatcccttcccgcatgaccattggtcacttgattgagtgtcttcag
ggcaaggtgtctgcaaacaagggagagattggtgatgctacaccttttaatgatgctgtc
aacgtgcaaaagatttcgaaccttctgtcagattatggctaccatctaagaggaaatgag
gtcctctacaatggcttcactggtcgaaaaatcacctcccagatcttcattggtcctacc
tattaccagcgcttgaagcacatggtggatgacaaaatccattcccgtgcacgagggcca
atccagatccttaacagacagcccatggaaggcagatctcgtgatggtggccttcgcttt
ggagaaatggaacgagattgccagattgctcatggagcagcccagttcttgagagaaaga
ttgtttgaagcttcagacccataccaggtccatgtgtgtaacctctgtggaatcatggca
attgcaaacacgaggactcacacctacgaatgccgcggatgccgtaataaaactcagata
tctttggttcgaatgccctacgcctgcaaactcctcttccaagaactgatgtctatgagt
attgcacctcgtatgatgagtgtttag
DBGET
integrated database retrieval system
