Cyanistes caeruleus (blue tit): 111930399 Help Entry 111930399         CDS       T05602                                  Symbol PRPF19 Name (RefSeq) pre-mRNA-processing factor 19   KO K10599   pre-mRNA-processing factor 19 [EC:2.3.2.27] Organism ccae  Cyanistes caeruleus (blue tit) Pathway ccae03040   Spliceosome ccae04120   Ubiquitin mediated proteolysis Brite KEGG Orthology (KO) [BR:ccae00001]  09120 Genetic Information Processing   09121 Transcription    03040 Spliceosome     111930399 (PRPF19)   09123 Folding, sorting and degradation    04120 Ubiquitin mediated proteolysis     111930399 (PRPF19)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03041 Spliceosome [BR:ccae03041]     111930399 (PRPF19)    04121 Ubiquitin system [BR:ccae04121]     111930399 (PRPF19)    03400 DNA repair and recombination proteins [BR:ccae03400]     111930399 (PRPF19) Enzymes [BR:ccae01000]  2. Transferases   2.3  Acyltransferases    2.3.2  Aminoacyltransferases     2.3.2.27  RING-type E3 ubiquitin transferase      111930399 (PRPF19) Spliceosome [BR:ccae03041]  Complex B   Other components    Prp19 complex     111930399 (PRPF19)  Complex C    Prp19-CDC5 complex     111930399 (PRPF19) Ubiquitin system [BR:ccae04121]  Ubiquitin ligases (E3)   U-box type E3    111930399 (PRPF19) DNA repair and recombination proteins [BR:ccae03400]  Eukaryotic type   Other factors with a suspected DNA repair function    PSO4 complex     111930399 (PRPF19) BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  WD40_Prp19 WD40 WD40_WDHD1_1st Prp19 WD40_CDC20-Fz Beta-prop_EML_2 WDR55 Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_2nd EIF3I Beta-prop_TEP1_2nd Beta-prop_CAF1B_HIR1 Beta-prop_EML ANAPC4_WD40 Beta-prop_WDR75_1st Beta-prop_SCAP WD40_MABP1-WDR62_1st Beta-prop_IFT140_1st Beta-prop_EIPR1 Beta-prop_TEP1_C NBCH_WD40 Beta-prop_HPS5 Beta-prop_IFT122_1st Beta-prop_Vps41 Beta-prop_DCAF4 WDR90_beta-prop_4th PEP5_VPS11_N Beta-prop_WDR19_1st Beta-prop_RIG_2nd WD40_RFWD3 U-box Beta-prop_SPT8 PROPPIN Beta-prop_Nup120_160 Cytochrom_D1 RMC1_N Beta-prop_DCAF12 Ge1_WD40 B-prop_COPA_B_2nd Beta-prop_WDR35_TULP_N DUF1830 zf-Nse ATG16 GP3 Motif Other DBs NCBI-GeneID:  111930399 NCBI-ProteinID:  XP_023784190 LinkDB All DBs Position 5 AA seq 512 aa AA seqDB search TTVPFPPYRCLSPAVSNEVPEHPCVSPVSNHVYERRLIEKYIAENGTDPVNNQPLSEEQL IDIKVAHPIRPKPPSATSIPAILKALQDEWDAVMLHSFTLRQQLQTTRQELSHALYQHDA ACRVIARLTKEVTAAREALATLKPQAGLIVPQAVPSAQPNVAGAGEAMDLGELAGMTPEI IQKLQDKATVLTTERKKRGKTVPEELVKPEELSKYRQVASHVGLHSASIPGILALDLCPS DTNKILTGGADKNVIVFDKSSEQILATLKGHTKKVTSVVFHPSQELVFSASPDATIRIWS VPNASCVQVVRAHEGSVTGLSLHATGDYLLSSSDDQYWAFSDIQTGRVLTKVTDESSGCA LTCAQFHPDGLIFGTGTMDSQIKIWDLKERTNVANFPGHSGPITSIAFSENGYYLATAAD DSSVKLWDLRKLKNFKTLQLDNNFEVKSLIFDQSGTYLALGGTDVQIYICKQWTEILHFT EHSGLTTGVAFGHHAKFIASTGMDRSLKFYSL NT seq 1539 nt NT seq  +upstreamnt  +downstreamnt accaccgttcccttcccaccctatcgttgcctttcccccgcagtttccaacgaggtcccg gagcacccgtgtgtgtcgccggtgtccaaccacgtgtacgagcggcggctgatcgagaaa tacatcgcggagaacggcaccgatcctgtcaacaaccagcccctgtctgaggagcagctc atcgacatcaaagtcgcccacccaatccgccccaaacccccctcggccaccagcatcccg gccatcctgaaagccctgcaggacgagtgggatgccgtgatgctgcacagcttcacgctg cggcagcagctgcagaccacgcgccaggagctgtcccacgccctgtaccagcacgatgcc gcctgcagggtcatcgcccgcctcaccaaggaggtcaccgctgccagagaagctctggcc acgctgaagcctcaggccgggctcatcgtgccccaggcggtgccatcagcgcagcccaac gtggccggcgctggcgaggccatggatctgggagagctggcgggaatgaccccagagatc atccagaagctccaagacaaggcgacggtgctgaccacggagcgtaagaagaggggcaag acagtcccggaggagctggtgaagccagaggagctcagcaagtaccggcaggtggcctca cacgtggggctgcacagtgccagcatcccaggaattcttgccttggatctgtgtccttct gacaccaacaagatccttactggtggagccgacaaaaacgtcatcgtgttcgacaagagc tcagagcagatcctggccacactcaagggccacaccaagaaagtcaccagcgtcgtcttc cacccatcccaggagttggtgttttcggcttctcccgatgccaccatccgtatctggtcc gttcccaacgcctcctgtgtccaggtggtccgtgcccacgagggctccgtgactgggctc agcctccacgccacgggtgattacctgctcagctcctcagatgaccagtactgggctttc tcagatatccagacgggccgtgtcctcaccaaggtgacggatgagagctctggatgtgct ctcacctgtgcccagttccacccggacgggctcatttttgggacgggaacgatggattcc caaatcaagatctgggatctgaaggaacgcaccaacgtggccaacttcccgggacattcc ggccccatcaccagcatcgccttttccgagaacggatactacctggccacggcagccgac gactcctcggtcaagctctgggatttgaggaagctcaagaacttcaagacattgcagctg gataacaacttcgaggtgaaatcgctgattttcgaccagagcgggacctatctggcgctg ggtgggaccgatgtccagatctacatctgcaagcagtggacagagatcctccacttcaca gagcacagtggtctgaccacaggagtggcctttggccaccatgccaagttcatcgcttcc acaggcatggatcggagcctcaagttctacagcctgtag

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