Cyanistes caeruleus (blue tit): 111930826
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Entry
111930826 CDS
T05602
Symbol
SOX6
Name
(RefSeq) transcription factor SOX-6 isoform X1
KO
K09269
transcription factor SOX5/6/13 (SOX group D)
Organism
ccae
Cyanistes caeruleus (blue tit)
Brite
KEGG Orthology (KO) [BR:
ccae00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ccae03000
]
111930826 (SOX6)
Transcription factors [BR:
ccae03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
111930826 (SOX6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
Motif
Other DBs
NCBI-GeneID:
111930826
NCBI-ProteinID:
XP_023784861
LinkDB
All DBs
Position
5
AA seq
800 aa
AA seq
DB search
MSSKQATSPFACAAADGEETMTQDLASRDKEEGNSDQHAASHLPLHNVMHNKPHSEELPT
LVTTIQQDPEWDGVISAQHRMESESNKLCSLYSFRNTSTSPNKPDEGGRDRSELMTSVNF
GTPERRKGSLADVVDTLKQKKLEEMTRTEQEDCTKARNELDSSCMEKLLSKDWKEKMEKL
NTSDLLGEIKGTPESLAEKERQLSTMITQLISLREQLLAAHDEQKKLAASQIEKQRQQMD
LARQQQEQIARQQQQLLQQQHKINLLQQQIQQVQGHMPPLMIPIFPHDQRTLAAAAAAQQ
GFLFPPGITYKPGDNYPVQFIPSTMAAAAASGLSPLQLQQLYAAQLASMQVSPGAKMPST
PQPPNTTGALSPTGMKNEKRGTSPVTQVKDEAAQPLNLSARPKTAEPVKSPTSPTQNLFP
ASKSSPVTVSNKSGIPSPLSGSLGRGSSLDILSSLNSPALFGDQDTVMKAIQEARKMREQ
IQREQQQQQQPHGVDGKLPSMNNMGLNNCRNEKERTRFENLGPQLTGKPNEDGKIGPGVI
DLTRPEDAEGSKAVNGSAAKLQQYYCWPTGGATVAEARVYRDSRGRASSEPHIKRPMNAF
MVWAKDERRKILQAFPDMHNSNISKILGSRWKSMSNQEKQPYYEEQARLSKIHLEKYPNY
KYKPRPKRTCIVDGKKLRIGEYKQLMRSRRQEMRQFFTVGQQPQIPITTGTGVVYPGAIT
MATTTPSPQMTSDCSSTSASPEPSIPVIQSTYGMKTDSGSLPGNEMINGEDEIEMYEDYE
DDPKSDYSSENEAHEAVSAN
NT seq
2403 nt
NT seq
+upstream
nt +downstream
nt
atgtcttccaagcaggctacctctccatttgcatgtgcagctgctgatggagaggaaaca
atgacccaggacttagcatcacgagacaaggaagagggaaacagtgatcagcatgcggcc
tctcatctgcctctacacaatgtaatgcacaacaaacctcactctgaggagctaccgact
ctggtcaccaccatccaacaggatcccgagtgggatggagtaatctcagcccaacacaga
atggagtcagagagtaataagttatgttccctatattccttccgaaatacctctacctca
ccaaacaagcccgacgaaggaggtcgtgaccgcagcgagctaatgaccagtgttaatttt
ggaacaccagagcgccgcaagggaagcctagcagatgtggtggacacactgaaacagaag
aaactagaagaaatgaccaggactgagcaagaagattgcacaaaagctaggaatgaactt
gattcatcctgtatggaaaagctactttctaaagactggaaagagaagatggaaaaatta
aacacaagtgatctccttggagaaattaaaggtacaccagaaagcctggcagaaaaagag
cgacagctctctactatgatcacccagctgatcagcttacgggagcagctcctggctgcc
catgatgagcagaaaaagctggcagcctcacaaattgaaaaacaacggcagcaaatggac
cttgctcgccaacagcaagaacagattgcaagacaacagcagcaacttctgcagcagcag
cacaaaatcaatctactgcagcagcaaattcagcaggttcagggtcacatgcctccgctc
atgatcccaatttttccacacgaccagcggacactggcagcggctgctgcagcccagcag
ggattcctctttcccccaggaataacttacaagccaggtgataactaccctgtgcagttc
attccatcaacaatggcagctgctgctgcttctggactcagccctttacagctccagcaa
ctgtatgcagctcagctggcaagcatgcaagtttctcctggagccaaaatgccatctact
ccacagccaccaaatacaacaggggcactttcacccactgggatgaaaaatgagaagaga
gggaccagcccggtaactcaagttaaggatgaagcagctcagccactgaatctctcagcc
cgacccaaaacagctgaacctgtcaaatccccaacatctccaacacagaatctcttccca
gccagcaaaagcagtccagtgacagtgtcgaacaagagtggcatccccagcccgctcagt
gggtctctgggaagaggatcctctttagatatcctttccagtcttaattcacctgcccta
tttggggaccaggacacagttatgaaagccattcaggaggctcgaaaaatgagagagcaa
atccaaagggaacagcagcagcaacagcagcctcatggtgttgatggaaaattaccctcc
atgaataacatgggtctaaacaactgcaggaatgaaaaggaaagaacaaggtttgaaaat
ttaggcccacagttaacagggaaacccaatgaagatggaaaaattggccctggtgtcatc
gatcttacaaggccagaagatgcagaagggagtaaagcagtgaatggctctgccgctaaa
ctacagcagtattattgttggccaacaggaggggccacggtggctgaagcccgggtctac
cgggactcacggggccgcgccagcagtgagccccacatcaagcggccgatgaacgccttc
atggtctgggccaaggatgagcgtcggaaaatcctccaggccttccccgacatgcacaac
tccaacatcagcaaaatcctaggatctcgctggaagtccatgtcaaatcaagagaaacaa
ccttattatgaagagcaggcacgactaagtaaaatccatctagaaaagtatcctaattac
aaatacaagcctcgaccaaaacgtacctgcattgtggatgggaagaaactgcgtattggt
gaatataaacaactgatgaggtctcgaagacaggagatgaggcagtttttcaccgtagga
caacagcctcagattccaatcaccacaggaacaggagttgtctaccctggtgctattacc
atggcaaccaccacgccatcccctcagatgacatcagattgctccagcacctctgccagc
cctgagcccagcatccctgtcatccagagcacttatggtatgaagacagacagcggaagc
cttcctggaaatgaaatgataaacggagaggatgaaatagaaatgtacgaggactatgag
gatgatcccaaatcagactatagtagtgaaaacgaagcccatgaggcagtcagtgccaac
tga
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