Cyanistes caeruleus (blue tit): 111930960
Help
Entry
111930960 CDS
T05602
Symbol
TRUB1
Name
(RefSeq) probable tRNA pseudouridine synthase 1
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
ccae
Cyanistes caeruleus (blue tit)
Brite
KEGG Orthology (KO) [BR:
ccae00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ccae03016
]
111930960 (TRUB1)
Enzymes [BR:
ccae01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
111930960 (TRUB1)
Transfer RNA biogenesis [BR:
ccae03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
111930960 (TRUB1)
Prokaryotic type
111930960 (TRUB1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
DMA
Pus10_C
Motif
Other DBs
NCBI-GeneID:
111930960
NCBI-ProteinID:
XP_023785046
LinkDB
All DBs
Position
6
AA seq
342 aa
AA seq
DB search
MSATSSLSLSHHGPGLSVPVCDHPFYKEILLIPKLNLPWRSLKLCPLVLSKYSSSHWGIE
GTAIHCSAHFSGDACKSLCVWWNRLPDNFGERLLAEAGVQTNGNKRNQVLKIGHGGTLDS
AATGVLVVGIGKGTKMLGTMLAGSKKYTAIGMLGKATDTLDATGKVTEEKPYDQVTKGDL
ENVLQKFTGDIMQVPPLYSALKKDGERLSTLMKRGEAVEAKPARPVRVYSLSLQQFQPPL
FTLDVECGGGFYVRSLVNDIGKELSTCATVQELTRTKQGPFTLEEHALQEDKWTIDDIAR
SLEHCTALLLGEPARKKLKTEHPGETAVICGDKLGQGKRLND
NT seq
1029 nt
NT seq
+upstream
nt +downstream
nt
atgagtgccacatccagcctgtctttgagccaccacggccctgggctgtccgttccagtg
tgtgatcaccctttctataaagaaattctcctaatacccaaactaaacctcccctggcgc
agcttgaaactatgtcctcttgtcctgtcaaaatacagttcttcccattggggcatcgaa
ggtaccgcaatacactgctcagcgcacttctccggcgatgcctgcaaatcgctctgtgtc
tggtggaaccgcctaccagataattttggggagcggctgctggcagaagctggtgtgcaa
acaaacgggaacaaaagaaatcaggttttgaaaattggacatggaggaactttggacagt
gcagccacaggagttctggttgttggtattggaaaaggaacaaaaatgctgggaactatg
ttggcaggttccaagaagtacactgccattggaatgctgggcaaggctactgatacatta
gatgctacaggaaaagtaactgaagaaaaaccttatgaccaagtgacaaaaggagatctt
gaaaatgttctgcaaaagttcacaggggacatcatgcaagttcccccactctattctgct
ttgaagaaggatggagaaaggctttcaactctgatgaagagaggggaagcagtggaagca
aagcctgctcggccagtgagagtgtacagcctttctctccagcagttccagccaccactg
ttcacgctggatgttgaatgcggtggtggcttttatgtcaggagcctggtcaatgacatt
ggcaaagagctctccacctgtgccacagtgcaggagctgacccgcaccaagcaggggccg
ttcacgctggaggaacacgccctgcaggaagacaagtggacaattgatgacattgctcgg
tccttggagcactgcacagccctgctcctgggagaaccagctcggaaaaaattgaagaca
gagcatcctggtgaaactgctgtgatctgtggggataagctgggtcaaggaaaaagactg
aatgattga
DBGET
integrated database retrieval system
