Cyanistes caeruleus (blue tit): 111932382
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Entry
111932382 CDS
T05602
Symbol
PRPF40A
Name
(RefSeq) LOW QUALITY PROTEIN: pre-mRNA-processing factor 40 homolog A
KO
K12821
pre-mRNA-processing factor 40
Organism
ccae
Cyanistes caeruleus (blue tit)
Pathway
ccae03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ccae00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111932382 (PRPF40A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ccae03041
]
111932382 (PRPF40A)
Spliceosome [BR:
ccae03041
]
Complex A
U1 snRNP components
U1 related factors
111932382 (PRPF40A)
Complex B
111932382 (PRPF40A)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
FF_RHG35_4th
WW_2
Motif
Other DBs
NCBI-GeneID:
111932382
NCBI-ProteinID:
XP_023787197
LinkDB
All DBs
Position
7
AA seq
801 aa
AA seq
DB search
MGHPGMPHYPPMGMHPMGQRPPNMPPVPHGMMPQMMPPMGGPPMGQMPGMMQSVMPGMMM
SHMSQAAMQPTVPPGVNSMDAQVGVTPPGTQTTHPVVSTVQLIXGLEFSQKSTWTEHKSP
DGRTYYYNTETKQSTWEKPDDLKTPAEQLLSKCPWKEYKSDSGKPYYYNSQTKESRWAKP
KELEDLEAMIKAEENSTKPEDAAAAASAPAAWQGASAKKEDEEAQPVKKTYTWNTKEEAK
QAFKELLKEKRVPSNASWEQAMKMIINDPRYSALAKLSEKKQAFNAYKVQTEKEEKEEAR
SKYKEAKESFQRFLENHEKMTSTTRYKKAEQMFGEMEVWNAISERDRLEIYEDVLFFLSK
KEKEQAKQLRKRNWEALKNILDNMANVTYCTTWSEAQQYLMDNPTFAEDEELQNMDKEDA
LICFEEHIRALEKEEEEEKQKSLLRERRRQRKNRESFQLFLDELHEHGQLHSMSSWMELY
PAISSDIRFTSMLGQPGSTALDLFKFYVEDLKARYHDEKKIIKDILKDKGFVVEVNTSFE
DFVTVISSTKRATTLDAGNIKLAFNSLLEKAEAREREREKEEARKMKRKESAFKSMLKQA
TPPIELDAVWEDIRDRFVKEPAFEDITLESERKRIFKDFLHVLEHECQHHHSKTKKHSKK
SKKHHRKRSRSRSGSESEDDDSHSKKKRQRSESRSVSERSSSAESERSYKKSKKHKKKSK
KRRHKSDSPESDVEREKDKKERERDSEKERARQRSESKHKSPTKKRPGKDSGNWDTSGSE
LSEGELEKQRRTLLEQLDEDQ
NT seq
2406 nt
NT seq
+upstream
nt +downstream
nt
atgggacaccctggaatgccgcactacccccccatggggatgcaccccatgggacagaga
ccccccaacatgcccccagttccccacgggatgatgcctcagatgatgccccccatggga
ggacccccaatggggcagatgcctggaatgatgcagtcagtgatgcctggaatgatgatg
tcccacatgtcccaggctgccatgcagcccacggttcctccgggagtgaacagcatggac
gcacaagtaggtgtgacccctcctggaactcagacgacgcatcccgtggtctccacagtc
cagttaattnntggtttggaattttcccagaaatccacgtggacggagcacaaatccccg
gatggaagaacttattactacaacaccgagaccaagcagtccacgtgggagaagccagac
gacctcaaaacccctgctgagcaattgttatccaagtgtccctggaaggaatataaatca
gattctgggaagccttattattacaattcccaaacaaaggaatcccgctgggcaaaaccc
aaagagctggaggatcttgaagcaatgattaaagctgaagaaaacagcacgaagccggag
gacgccgccgccgccgcctcagctccggccgcntggcagggtgcttctgcaaagaaggag
gatgaggaggcccaaccagttaaaaaaacctacacgtggaacacaaaggaagaggccaaa
caagcatttaaagaactgctaaaagaaaagcgggttccatccaatgcttcctgggagcaa
gccatgaaaatgatcatcaatgaccccagatacagtgctttggcaaaactgagtgagaag
aagcaagcctttaacgcctacaaagttcagacagagaaggaggagaaggaagaagccaga
tccaagtacaaggaagccaaggaatccttccagcgcttcctggaaaaccacgagaagatg
acatccaccaccagatacaagaaagctgaacaaatgtttggggagatggaagtgtggaac
gccatatccgagcgggaccggctggagatttatgaggatgttttgttcttcctgtccaag
aaggagaaggaacaagccaagcagctgcggaagaggaactgggaagctctgaagaacatt
ctggataacatggccaacgtcacctactgcaccacctggtcagaggcgcagcagtacctc
atggacaaccccaccttcgccgaggatgaggagctccagaacatggataaggaggacgcc
ctgatctgtttcgaggaacatatcagagccctggaaaaagaggaggaggaagagaagcag
aaaagtttgctgagggaaaggaggaggcaacgtaaaaacagggaatctttccagctgttt
ctggacgagctgcacgagcacgggcagttacattccatgtcctcctggatggaattgtac
ccggccatcagctccgacatccgcttcaccagcatgctcggccagcccggatcaacagcg
ctggacctgttcaagttctacgtggaggatttgaaagctcgttaccacgatgagaaaaag
ataattaaagacatcttaaaggataaaggatttgtggtggaagtgaacacttcctttgag
gattttgtcaccgtcatcagctccactaaaagagccaccacgttggatgcagggaatatc
aaactggctttcaacagtctgctggagaaggcggaagcgcgggaacgggagcgggaaaag
gaggaagcgcggaagatgaagaggaaggaatcggccttcaagagcatgttgaaacaagcc
acccctcccatcgagctggatgctgtctgggaggatatccgagacagatttgtgaaggag
ccggcatttgaagacatcaccctggaatctgaaaggaaaaggatatttaaggatttcctt
catgtccttgagcacgagtgtcaacaccaccactccaagaccaagaaacattcgaagaaa
tccaaaaaacatcaccggaagcgctcccgttcccgctccggctcagagtccgaggatgac
gacagccactccaagaagaagcggcagcgctcggaatcgcggtcggtgtcggagcgttct
tccagcgccgagtccgagaggagttacaagaagtccaaaaaacacaagaagaagagcaag
aagaggaggcacaagtctgattcaccagaatccgatgtggaacgagagaaggacaagaaa
gaaagagagagggatagtgagaaggaaagagccagacagagatctgagtccaagcataaa
tctcccactaaaaaacggcctggaaaagattccggaaactgggatacctctggcagcgag
ctcagcgagggggagctggaaaaacagaggaggactcttttggaacagctggatgaagat
cagtga
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