Cyanistes caeruleus (blue tit): 111932559
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Entry
111932559 CDS
T05602
Symbol
RC3H1
Name
(RefSeq) roquin-1 isoform X1
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
ccae
Cyanistes caeruleus (blue tit)
Brite
KEGG Orthology (KO) [BR:
ccae00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ccae03000
]
111932559 (RC3H1)
04121 Ubiquitin system [BR:
ccae04121
]
111932559 (RC3H1)
Transcription factors [BR:
ccae03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
111932559 (RC3H1)
Ubiquitin system [BR:
ccae04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
111932559 (RC3H1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-RING_5
zf-RING_UBOX
zf-RING_2
zf-C3HC4_4
zf-CCCH
Prok-RING_4
zf-C3HC4_3
zf-C3HC4
zf-CCCH_UNK
zf-C3HC4_2
zf_CCCH_4
zf-CCCH_4
zf-RING_10
Vesi_VP2
PaaA_PaaC
Baculo_IE-1
FYVE
zf-RING_4
zf-RING_6
Motif
Other DBs
NCBI-GeneID:
111932559
NCBI-ProteinID:
XP_023787429
UniProt:
A0A8C0VEJ0
LinkDB
All DBs
Position
8
AA seq
1124 aa
AA seq
DB search
MPVQAPQWTDFLSCPICTQTFDESIRKPISLGCGHTVCKMCLNKLHRKACPFDQTTINTD
IELLPVNSALLQLVGAQVPEQQPITLRSGAEDTKHYEEGKKCVEELALYLKPLSSARGVG
LNSTTQSVLSRPMQRKLVTLVHCQLVEEEGRIRAMRAARSLGERTVTELILQHQNPQQLS
SNLWAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKT
SIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDSQIVQIAMEAGLRIAP
DQWSSLLYGDQSHKSHMQSIIDKLQTPASFAQSVQELTIALQRTGDPANLNRLRPHLELL
ANIDPSPDAPPPTWEQLENGLVAVRTVVHGLVDYIQNHSKKGTDQQQPPQHSKYKTYMCR
DMKQRGGCPRGASCTFAHSQEELEKFRKMNKRLVPRRPLSASLGQLNEVGLPSGAILSEE
GGVDLPNRKTSALPNGIVSTGSTVTQLISRGTDSSYETALKPGKMDHLSSSAPGSPPDLL
ESVPKSSISALPVNPHPVPARMPADLPSVSVTKQLQMVPRGSQLYSAQQADIFYQDPRGA
APSFEPAPYQQGVYYPTQSMSRFVRPPPSATEPGIPYLEHYGPYLPERVVSPQYPQPQGY
PTLAQPMYPPHYDSRRVYPPVQPYQREDVVRGSPVPIDIPQAAVPLYVPESRDRYQQTEA
YCAVAPHLGQIRPSCHRPHPSLDELHRRRKEIMAQLEERKVISPPPFAPSPTLPHPFHPE
EYLDEDLKVAGKYKGNDYSQYSPWSCDTIGSYIGTKDAKPKDVVAARSVEMANVDSKAMR
EQRLDMQRRAAETGDDDLIPFGDRPTVSRFGAISRTSKAVYQNSGPMQALAVQGAATKSI
ISDYSPYETHSGWGGSPYSPHQNIPSQGRFNDRERLSMSDVAGHGKQLPSAEREQQLRME
LQQVDHQISQQTQMRGLEAVSNRLLLQREVTTLAGQPQPPPPPPKWPGMISSEQLSLELH
QVEREIGKRTRELSMESQSSLDMKNKLDTAKQTENGQLEPQNKVPAEDLTLTFSSDVPNG
SALTQDNIGLLSNNMASLSLSEDPKGGGDGHDSQRVGVTPTSAP
NT seq
3375 nt
NT seq
+upstream
nt +downstream
nt
atgcctgtacaagctccacaatggacagattttctctcctgcccgatttgcacacagact
ttcgacgaatctatccggaagcccatcagcttgggttgtggccacactgtctgcaagatg
tgcctcaacaagctccaccgtaaggcttgtccctttgaccagaccactatcaacacagac
attgaactccttcctgtgaactcagctttgctgcaacttgtgggtgctcaggttcctgag
cagcagccaattactttacgcagtggagctgaagatactaagcattatgaggagggcaag
aaatgtgtggaagaactggcattgtacctcaaaccactcagcagtgcaagaggtgtgggt
cttaacagtactactcagagtgtgctgagtcgtcccatgcagaggaaacttgtgacatta
gtccattgccagctggtggaggaggaagggcggatcagagccatgcgtgcagcacggtca
ctgggtgaaagaacagtcacagagctcattcttcagcatcaaaaccctcagcagctttcc
tccaacctctgggctgcagtgagagccagagggtgccagttccttgggccagcaatgcaa
gaggaggctttaaagctagttctgctggctttggaagatggatctgctctgtcacgaaag
gtcttggttctctttgtggtgcaaagactggagccacgattccctcaggcttccaaaact
agcattgggcatgttgtccagctcctttacagagcctcatgcttcaaggtgaccaagcga
gatgaggattcctccctgatgcaactgaaggaggaatttcggacttatgaagctctgaga
agggaacatgattctcagatagttcaaatagctatggaagcaggtttgcgcattgcacca
gaccagtggtcctcgctgttatatggagaccagtctcacaaatcccacatgcagagtatc
atcgacaagttgcagaccccagcatcatttgcacagagtgttcaggaattaactattgct
cttcagaggaccggagatccagctaacttgaatcgtcttcgacctcacctagagcttcta
gcaaatattgatccaagtccagatgctccacctccaacatgggaacaactggaaaatggg
ctagttgctgtgaggactgtagttcatggcttagttgattatatccagaatcacagcaaa
aaaggaacagatcaacaacagccccctcagcacagcaagtacaagacatatatgtgccga
gacatgaagcagagaggaggatgtccacggggggccagctgcaccttcgcacactcacag
gaggagctggaaaaattccgtaaaatgaacaagcgtctcgttcccagaagaccccttagt
gcttccctgggccagctgaatgaggtgggcctgccttcaggagctatcctctcagaggaa
gggggagtggacttgcccaataggaaaacttctgctctgccaaatggaattgtgtcaaca
ggcagcacagtgacgcaactaatttctcgagggactgactccagttatgaaactgccctg
aaaccagggaagatggaccatctgagtagcagtgcccctggatcccctcctgacttgctg
gaatctgttcccaagagctctatttctgccttgccagtgaaccctcatcctgttcctgct
cgaatgccagcagatctgccctcggtgtctgtcaccaagcagttgcagatggtaccacga
gggtctcagttgtacagtgcacaacaagcagatatattttatcaagaccccagaggggcc
gccccatcgtttgagccagcaccctaccaacaaggagtgtactatcccactcagtccatg
tctcgctttgtccgacctcctccatcagcaaccgaaccaggtataccatacctggagcac
tacgggccatatttgccagagcgtgtggtaagcccacagtacccacagccacaggggtac
ccgaccctggcgcagcccatgtacccaccacactacgacagtcgccgcgtgtaccccccc
gtgcagccctaccagcgggaggatgtggtgcggggcagcccagtgcccatcgacatccca
caagcagctgtgcccctctacgtacctgagtccagagacagataccagcaaacagaggct
tattgtgcagtggctccacatcttggtcagatcagaccttcgtgccacaggcctcatccc
agcctggatgagcttcaccgacgaaggaaagagatcatggcccagctggaggagaggaag
gtgatttctccacctccttttgcaccgtcaccaaccttgcctcatccttttcacccagag
gagtacttggatgaagacctgaaggtagctgggaaatacaaaggaaatgactacagccag
tactctccctggtcctgtgacaccatcggctcctacattggaaccaaagatgcaaaaccc
aaagatgttgtggcagcaagaagtgtggagatggcgaatgtggatagtaaagccatgcgt
gagcagcgactggacatgcagcgacgagcagccgagacaggggacgatgacctcattcca
tttggagaccgaccaaccgtgtcaagatttggggccatctctcgtacttccaaagccgtg
taccagaactctgggcccatgcaggccctggcagttcagggagctgccaccaaatccatc
atttcagactacagtccttacgaaacccacagtggctggggaggctctccatattctcct
catcaaaatataccttctcagggtcgtttcaatgacagggagagactgtccatgtcagat
gtggctggtcatgggaagcagttgccctcagctgaacgagagcagcagctgcgcatggaa
ctgcagcaagttgaccatcagatcagccagcagacacaaatgcggggactggaggctgtt
agtaacaggctgctgttgcagagagaggtgactaccctggcaggccaaccacaaccccca
cccccacctcccaagtggcctgggatgatctcaagtgagcagctgagcttggaactgcac
caggtggaaagggaaattgggaagcgaacccgtgagctgagcatggagagccagtcttca
ctggatatgaaaaacaagctggataccgctaaacagacagaaaatggacaattagaacca
caaaacaaggttccagctgaggaccttacactgacattcagcagtgatgttccgaatgga
tcagctttgacccaagacaacattggcctcctgtcaaacaatatggcatctctcagcctg
tcggaggaccctaagggaggaggagatggccatgactcccagcgagtgggagtgacaccc
acatctgctccatga
DBGET
integrated database retrieval system
