KEGG   Cyanistes caeruleus (blue tit): 111933381
Entry
111933381         CDS       T05602                                 
Symbol
RFC4
Name
(RefSeq) replication factor C subunit 4 isoform X1
  KO
K10755  replication factor C subunit 2/4
Organism
ccae  Cyanistes caeruleus (blue tit)
Pathway
ccae03030  DNA replication
ccae03410  Base excision repair
ccae03420  Nucleotide excision repair
ccae03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:ccae00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    111933381 (RFC4)
   03410 Base excision repair
    111933381 (RFC4)
   03420 Nucleotide excision repair
    111933381 (RFC4)
   03430 Mismatch repair
    111933381 (RFC4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ccae03032]
    111933381 (RFC4)
   03036 Chromosome and associated proteins [BR:ccae03036]
    111933381 (RFC4)
   03400 DNA repair and recombination proteins [BR:ccae03400]
    111933381 (RFC4)
DNA replication proteins [BR:ccae03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    111933381 (RFC4)
  DNA Replication Termination Factors
   ELG1-RFC complex
    111933381 (RFC4)
Chromosome and associated proteins [BR:ccae03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    111933381 (RFC4)
DNA repair and recombination proteins [BR:ccae03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     111933381 (RFC4)
  Check point factors
   HRAD17(Rad24)-RFC complex
    111933381 (RFC4)
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 RCF1-5-like_lid AAA_assoc_2 Rad17 AAA_16 AAA_11 AAA_30 AAA_22 AAA_24 Mg_chelatase DUF815 SLFN-g3_helicase AAA_14 RuvB_N AAA_19 AAA_5 TIP49_C AAA_28 AAA_23 DNAX_ATPase_lid ResIII AAA_7
Other DBs
NCBI-GeneID: 111933381
NCBI-ProteinID: XP_023788673
LinkDB
Position
9
AA seq 362 aa
MQAFLKGPASISTKPVAAKEKSAAGSSGEGKRTKPIPWVEKYRPKNVDEVAFQDEVVAVL
KKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPDLFRQRVLELNASDERGIQVIREK
VKAFAQLTASGSRSDGKMCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNY
ISRIIEPLTSRCSKFRFKPLSDSIQQQRLLDVSEKEHVKISNEAVSYLVKVSEGDLRKAI
TFLQSATRLMGGKEITEKIITEIAGVIPKETIDELLLGCQSGSFEKLETLAKNLINEGFA
VAQLVNQLHDTIVESEDYSDKQKSAIVEKLAEVDKCLADGADEFLQLMSLCALVMQQLTQ
NI
NT seq 1089 nt   +upstreamnt  +downstreamnt
atgcaggccttcctcaagggcccggcctctatcagcaccaagcccgtcgctgccaaggaa
aagagcgccgccgggagcagcggggagggcaagaggaccaaacccatcccctgggtggag
aaatatcgtcccaaaaatgtagatgaagtcgccttccaggatgaagttgtagctgtgctg
aagaagtccctggaaggtgctgatcttcccaatctgttgttctatggcccacctggaact
ggaaagacttccactattttagcagctgcaagagaactgtttgggcctgatttattccga
caaagagtccttgagttaaatgcttctgatgagcgtgggatacaagtgattcgggaaaaa
gtgaaggcttttgctcagctaacggcatctggaagccgttcagatggtaaaatgtgtcct
ccttttaaaattgtcatcctggatgaagcagactctatgacttcagcagcccaggcagcc
ttaagacgcacaatggagaaagaatctaaaacaacgcgtttctgtcttatttgtaactac
atcagcagaataattgaacctttaacatctcgatgctccaaattccgcttcaagcctttg
tctgacagtatccaacagcagaggctcttggatgtttctgagaaggaacatgtgaaaatc
agtaatgaggcagtatcgtacctggtgaaagtgtcagaaggagacttaagaaaagcaatt
acttttcttcaaagtgccactcgcttaatgggtgggaaggagataacagagaagataatc
actgaaattgctggggtcatccctaaagaaacaattgatgagctgctattgggctgccag
agtggttcttttgagaaactggaaacactggcaaagaatctcatcaatgagggttttgct
gttgctcagcttgtaaaccagctgcatgacaccattgtggagagcgaagattacagtgac
aaacagaaatctgccatagttgagaaacttgcagaagtggacaaatgccttgcagatggt
gctgatgaattcttgcagctgatgagtctctgtgcccttgtgatgcagcagctcacacag
aacatctga

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