Cyanistes caeruleus (blue tit): 111934601
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Entry
111934601 CDS
T05602
Symbol
CHD9
Name
(RefSeq) LOW QUALITY PROTEIN: chromodomain-helicase-DNA-binding protein 9
KO
K14438
chromodomain-helicase-DNA-binding protein 9 [EC:5.6.2.-]
Organism
ccae
Cyanistes caeruleus (blue tit)
Brite
KEGG Orthology (KO) [BR:
ccae00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ccae03036
]
111934601 (CHD9)
Chromosome and associated proteins [BR:
ccae03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
111934601 (CHD9)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_CHD6-9
BRK
Helicase_C
Chromo
ResIII
DEAD
HDA2-3
HTH_Hrp3
Myb_DNA-bind_7
Motif
Other DBs
NCBI-GeneID:
111934601
NCBI-ProteinID:
XP_023790542
LinkDB
All DBs
Position
11
AA seq
2889 aa
AA seq
DB search
MTDPMMDFFDDANLFSETLEGLSDDAFVQPGPVSLVDELNLGAEFEPLHIDSLNHVQDAQ
NQQKMSEFDQLNQYDSLKLHSVNQSFNSSADNVLSPHSQFNCSPVHPQNQSNGMFPDVAD
GSPMWGHQTATTVSNQNGSPFHQGHSQSMQQNKSFVAHHDFALFQANEPQHQCASLRPQQ
SRNNTGQDALSQPKDFMEVNVSTSLRVSVNHPPSVSNPSTSQQPLSVQQFSQNASASIHF
CGNQEGNFDGQSPTITPCSVSNSQQFSSPYSYSNNRISPTSLLQPTTALSTSQQTHSISD
FTGSDAFTSQTGTKQETTEHMLNPNTPLNSSTFQMLHSAHPQGNFSSSKLSPVNINFSAS
TSSASQISHFTDPIESNGFTSLDDNLLHQVETHSEPFTGLDPDDLLQEDLLPQFDDSAFV
QDSTSHVLEHDLEHHITPQQVTPSSELVRAPSQTQIHPWHSSVSNQHLQGRSRATLQGQP
PSKKTDGSGSYTKLQNTQVRAMSEKKQKKKTDSESKQEKANRIISEAIAKAKERGERNIP
RVMSPENFPSVSAEGKEEKKGRKVKSKPKDKESKKPKTGSSSKIKEKTKIGKLIITLGKK
QKRKNESSDELSDAKQTPQRPLKDEDSQKRRSNRQVKRKKYAEEGEGKQSEEEAAKVSVK
IKKNSAPLPAEQPLQLFVENPSEEDAAIVDKILSSRVIKKEVSAGMTVDTEEFFVKYKNY
SYLHCEWATEQQLLKDKRIQQKIKRFKVRKAQRAHFFADMEEEPFNPDYVEVDRVLEVSL
CEDKDTGEPVIYYLVKWCSLPYEDSTWELKEDVDQAKIEEFEQLQASRPDSRRLDRPPPN
SWKKIEQSREYKNGNQLREYQLEGLNWLLFNWYNRRNCILADEMGLGKTIQSITFLYEIL
LTGIRGPFLIIAPLSTITNWEREFRTWTDLNVVVYHGSMISRQMIQQYEMYFRDSQGRIV
RGTYRFQAIITTFEMILGGCPELNAIEWRCVIIDEAHRLKNKNCKLLEGLKLMNLEHKVL
LTGTPLQNTVEELFSLLHFLEPLRFPAESTFMQEFGDLKTEEQVQKLQAILKPMMLRRLK
EDVEKKLAPKEETIIEVELTNIQKKYYRAILEKNFAFLSKGAGQANVPNLVNTMMELRKC
CNHPYLIKGAEEKILGEFKETYSPSAPDFHLQAMIQSAGKLVLIDKLLPKMKAGGHKVLI
FSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGL
GINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQNKAVKVYRLITRNSYEREMFDRASLK
LGLDKAVLQSMSGRENSVGGIQQLSKKEIEDLLRRGAYGAIMDEEDEGSKFCEEDIDQIL
QRRTKTITIESEGRGSTFAKASFVASGNRTDISLDDPNFWQKWAKKAEIDIDAISGRNSL
VIDTPRIRKQTRPFSATKDELAELSEVESECDEKPKLRRPCDRSNGYGRTECFRVEKNLL
VYGWGRWREILSHGRFKRQLNEQDVEIICRALLAYCLVHYRGDEKIKSFIWDLITPTEDG
QTRELQNHLGLSAPVPRGRKGKKVKTQASTFDIHKAEWLRKYNPEHLLQDEGYKKHIKHH
CNKVLLRVRMLYYLKQEVIGNEFQKVFDGTDASEIDVWVPEPDHSEVPAEWWDADADKSL
LIGVFKHGYEKYNTIRADPALCFLERVGKPDEKAVAAEQRANDYMDGDVEDPEYKPAPAL
FKDDIEKNLFFPXLGFHIDGQMMEGDKIYWPTQSALTTRLRRLITAYQRTSKNRQAQQMQ
PTFPVQTSMMQLPYEEAALNPKMAAKIERQQRWTRREEADFYRVVSTFGVVFDPERGRFD
WTKFRAMARLHKKTDESLEKYLYAFMSMCRRVCRLPSKEELVDPNIFIQPITEERASRTL
YRIELLRKVREQALRHPQLFERLKLCQPNPDLPVWWECGTHDRDLLIGAAKHGVSRTDYH
ILRDPELSFMSAQRNYNQNKVALSRTSTPLLHQYQMALSASPLTPQSRLSDAKVNAFEDA
KAKNENLKEDPQSSEEESMSTEETQTILKSETLSPKNGTPIQITDHRPSVKAETDRRMVA
ARTEPLTPNPASKKQRVSKRGSDSSSDSDSDSDRSSCSSRSSSSSSSSSSSCSQSRSGSS
SSSSSSCSSASSSSSSSSSSSSSSSSSSSEESDSDEEEAQKREGTPHIKAYDEESVASLS
TTQDETQDSFQMNNGTPNSGYLLQGGYMLAASYWPKDRVMINRLDSICQTVLKGKWPSAR
RSYDSTAVASFYTTKLLDSSGAAAEYSEPSAPTPPLAAVKEEYDQSPQLSKVKKHVREKE
FTVKINDEGGLKLTFQKQGLSQKRPFESEEGALGQQQYLARLRELQNASETSLVNFPKSL
PKSGTSSHLTASANGVIVDSQPVVKKRRGRRKNVEGVDVLFMNRNKQPNHVNPGINSCQV
AAGINPALTYTQSQGMLDAESPVPVINLKDGTRLAGDDAPKRKDLERWLKEHPGYVEDSG
ACIPRMQLHDGRPKQKRHRCRNPNKLDVNSLTGEERVQLINRRNARKVGGAFAPPLKDLC
RFLKENPEYGVAPEWGEVVKQSGFLPEGMFDRILTGPVVREEVSRRGRRPKSEIAKATAA
AAAASAASVPISPLLANGLLPGVDLPSLQALQQNLQNLQSLQVTAGLMGMPAGLAAGGEA
KNVAAMFPMLLSGMAGLPNLLGMGGLLTKSTESVSEEKKGNESKDMDTKKERTEDQNTDT
GGENSVSSSPSTSSAAAAANPLSLNPLLLSNILYPGMLLTPGLNLHIPALSQSNIFDVQN
SESNDTGSAKPTEEKEENSRVRDQEDKGGTEPSSHNENSTDEGSEKADASSGSDSTSSSS
EDSDSSDED
NT seq
8670 nt
NT seq
+upstream
nt +downstream
nt
atgactgatcctatgatggatttttttgatgatgccaatctttttagtgagaccttagaa
ggtttgtcagatgatgcctttgttcaacctggacctgtttcacttgttgatgaattgaat
ttgggtgcagaatttgaacctttgcacatagactcactgaaccatgtgcaagatgctcaa
aatcaacaaaagatgagtgagtttgatcagctgaatcagtatgattcactgaagcttcac
tcagtaaatcagtcttttaatagctcagctgacaatgtcttatcaccacactctcaattc
aattgttcaccagttcatccgcaaaaccagtccaatgggatgtttccagatgtggctgat
ggtagtcctatgtggggtcatcaaactgccacaactgtttcaaatcaaaatgggtcccct
tttcaccaaggacattctcagtctatgcagcaaaacaaaagctttgtagcacaccatgac
tttgccttatttcaggctaatgaaccacagcatcagtgtgcctcactacggccgcagcag
agcaggaacaacacggggcaggatgctctgagtcagccaaaagacttcatggaagttaac
gtgtctacttccctcagagtcagtgttaaccacccaccttcagtttctaatccatcgact
tcacagcagcctctgtccgttcaacagttttctcaaaatgcaagtgcttcaatacatttt
tgtgggaatcaagaaggaaattttgatggacagtccccaactattactccatgttctgtc
agtaatagtcaacaattttcatctccatattcctactctaataaccgcatttctcctacc
agccttcttcagcctacaacagctctttctactagccagcagacacactctatctctgat
ttcactggaagcgatgcctttacatctcaaacagggaccaagcaagaaacaactgagcac
atgttgaatcctaatacacctttgaattcaagtacttttcaaatgttgcattctgcgcat
cctcagggcaactttagtagttcaaaactctctcctgtgaatattaatttttcagcttcc
actagttctgcttctcagataagccatttcaccgaccctattgaaagcaatggttttaca
tctttagatgataacttacttcatcaagtggagactcacagtgaaccattcacaggactt
gacccggatgacctcctgcaggaagaccttctgccacagttcgatgactctgcgtttgtt
caggatagcacaagccatgttttagagcatgacctagaacaccacataaccccacagcaa
gtgacaccgtcatctgaactcgttcgggcaccgtctcaaactcagatccatccttggcat
tcttcagtttctaatcagcacctgcaaggcagaagtcgtgcaaccttacaagggcagcct
ccttccaagaagactgatggttcaggatcatatactaagttgcagaatacccaggtgagg
gcaatgtcagaaaagaagcagaagaaaaaaacggactcagaaagtaaacaagagaaggca
aatcgcataatatctgaagcaattgcaaaggcaaaagagagaggagagagaaacattcca
cgagtaatgagccctgaaaacttccccagtgtttcagctgaaggaaaagaagaaaagaag
ggtagaaaagttaaatccaaaccaaaggataaggagagcaaaaagccgaaaactggttcc
tcatccaaaattaaagagaagacaaaaattggaaagctgatcatcaccctgggcaaaaag
cagaaaaggaaaaacgagtcttcagatgaattgtctgatgctaagcagactccacagcgg
ccactgaaagatgaagactcacagaagagaagatcaaatcggcaagttaaaaggaaaaaa
tacgctgaagaaggggaagggaaacaatcagaagaggaagcagctaaagtttctgttaaa
atcaaaaagaattctgctcctttacctgctgaacagcctttacaattatttgtggaaaat
ccaagtgaagaagatgcagcaattgtagataaaatcttatcctccagggtaataaagaaa
gaagtatctgctgggatgacagtagacacagaagagttttttgtaaaatacaagaactac
tcatatctccactgtgagtgggccacagaacaacagcttttaaaggataaaagaatccag
cagaaaataaagcgattcaaagtaaggaaagcacaaagagctcacttttttgcagatatg
gaagaggaaccttttaatcctgactatgttgaggtggatcgggtattagaagtgtctctt
tgtgaagataaagacactggtgagcctgttatttactatttagtaaaatggtgttcgttg
ccatatgaagacagtacgtgggagctgaaagaagatgtagatcaagcaaaaatagaagaa
tttgaacaattgcaagcttccaggcctgactcaaggagattggaccgaccacctccaaac
tcctggaagaagatagaacagtccagggaatataaaaatggcaatcagctcagggaatat
caactggaaggacttaactggctcctattcaactggtacaataggcgaaattgtatttta
gcagatgaaatgggccttggcaaaaccattcagtccattacattcctgtatgaaatcctc
ctgactggtataagaggccctttcctgatcatagctccactttccactataacaaactgg
gagagggaattccgcacgtggactgacctgaacgttgtggtgtaccatggaagtatgatc
agcaggcaaatgattcagcagtatgagatgtacttcagggactcccagggccgtattgtt
cgaggtacctacaggttccaggccattatcacaacttttgaaatgattcttggtgggtgt
ccagaattaaatgcaattgagtggcggtgtgttattattgatgaagctcacagactgaag
aacaaaaactgcaaacttttggaaggactaaaattaatgaaccttgagcataaagtgctg
ttaacaggtaccccactgcagaacacagtagaagaattatttagcctccttcattttctg
gaaccattgcgttttcctgctgaatctacattcatgcaggagtttggagaccttaaaaca
gaggaacaggttcagaaactacaagctatcctgaaacccatgatgctcaggagattaaaa
gaagatgtagaaaaaaagctggctcctaaggaggaaaccataattgaagtagaactaact
aatattcagaagaaatattaccgagcaattttggagaagaattttgctttcttatccaaa
ggagcagggcaggcaaatgtacccaatctggttaacactatgatggaactcagaaagtgt
tgtaatcacccttatctcatcaaaggtgctgaagagaagatcctcggagagtttaaagaa
acatatagtccaagtgctcctgacttccacctgcaagcaatgatacagtctgctggtaaa
ttggttcttattgacaagcttcttccaaaaatgaaagcaggaggccacaaggtccttatc
ttctctcaaatggtgcgctgccttgatattttggaggattaccttatacataaaaggtat
ctgtacgagagaatcgacgggcgcgtgcgagggaacctcaggcaagctgccatcgaccgc
ttcagcaaaccagactcggatcgcttcgtcttcctcctctgcaccagggctgggggcctg
ggcatcaacctgactgctgcagatacctgcatcatttttgactctgactggaatccccaa
aatgacctgcaggctcaagcccgatgccacaggattggtcagaacaaagcagtgaaggtc
tacagactgatcacacgtaattcctatgagagagagatgtttgacagagcaagtctgaaa
ctgggattggataaggctgtcttgcagagtatgagtggaagagaaaacagtgttggtggt
atccaacaactctccaaaaaagaaatagaagacttgcttcgaagaggtgcctatggtgcc
attatggatgaagaggatgaaggctccaagttctgtgaggaagacattgaccagattctg
cagcgtcggactaaaaccatcacaattgaatccgagggaagaggctccacgtttgccaag
gctagttttgttgcatctggaaacaggactgatatttcactagatgatcccaacttctgg
cagaaatgggctaaaaaagcagaaatagatattgacgctatcagtggtagaaacagcctt
gttattgataccccaagaatcaggaaacaaacacggcccttcagtgctacaaaggatgag
ctggcagagttgtccgaggtggagagtgagtgtgatgagaaaccaaagctccgccggccg
tgtgaccgttccaacggctatggaaggacagagtgcttccgtgtggagaagaacttgctg
gtctatgggtggggtcgatggagagaaattctgtcccatggtcgcttcaagaggcagcta
aatgagcaggatgtggagataatttgccgagccctgttagcctattgtctcgttcactac
agaggggatgagaaaataaagagttttatatgggatctcatcaccccaacagaggatggg
caaacacgagagttacagaaccacctcggcttatcagcccctgtgcctagaggaagaaaa
ggaaaaaaagtgaagacccaggctagcactttcgatatacacaaagctgaatggcttcga
aaatacaacccagaacatctgttgcaagatgaaggatacaaaaagcacataaaacaccat
tgtaacaaggtcttacttcgagtaagaatgctgtattacttaaaacaagaagtcattggt
aatgaattccaaaaggtcttcgatggaactgatgccagtgaaattgatgtttgggttcct
gagccagaccactctgaagttcctgctgagtggtgggatgcagatgcagataaatctctc
ctaattggagtttttaaacacggttatgagaaatacaacactatcagagcagacccagct
ctttgcttcttggaaagagttggaaaaccagatgagaaagcagttgctgccgaacagaga
gcaaatgattatatggatggggatgtagaagatccagaatataaaccagcaccagcactg
tttaaagatgacatagagaaaaatttatttttcccatgacttggttttcatatagatgga
caaatgatggaaggggacaaaatctattggcccactcagtctgccttaacaacgcgtctg
cgccgcctgataacagcttaccaacgaacaagtaaaaacaggcaggcccagcagatgcag
ccaacattcccagtacaaaccagtatgatgcagcttccatatgaagaagctgcactaaat
ccaaagatggctgctaagattgaaagacagcaaagatggacaagaagagaagaggctgac
ttttacagagttgtgtccacatttggagtggtgtttgaccctgaaaggggacggtttgac
tggaccaagttccgagcgatggctcggctgcacaagaaaactgatgagagcttggagaag
tacctgtatgcgtttatgtcaatgtgcaggagggtctgtcggctcccctcaaaagaagaa
ctcgtggacccaaacatttttatccagcccatcacagaggaacgtgcttccaggactttg
taccgcatcgagctcctgcggaaagtgcgagaacaggctctcagacacccccagttgttt
gagcgactaaagctgtgccagccaaacccagacctacctgtctggtgggaatgtgggact
catgacagggatttacttattggagctgctaagcatggagttagcaggacagattatcat
attcttcgtgatcctgaactctcatttatgtctgcccagaggaactataatcaaaacaaa
gtggctctctcaaggacttctactccactcttgcaccagtaccagatggcattatctgct
tctcctcttacacctcagtcaagactgtcagatgctaaagtgaatgcttttgaggatgca
aaagctaaaaatgaaaatctgaaagaggaccctcagtcttctgaagaggaatccatgtct
acagaggagacacagacaatactgaaatctgaaactttgagtcccaaaaatggcacccca
atacaaattacagaccacagacctagtgtgaaggctgagacagacaggcgcatggtggca
gcaaggacagagcctctaactccaaacccagcttccaaaaaacagagagtcagcaaaagg
gggtctgactctagctctgactcagactctgactcagatagatcatcctgttcttccagg
tcatcatcttcatcctcttcgtcttcctcatcttgttcccagtctcgatctggctctagc
tcttcatcatcttcatcttgttcttcagcatcttcatcctcctcctcatcgtcctcatca
tcatcgtcgtcgtcatcatcatcgtctgaagagagtgatagtgatgaagaggaggcacaa
aaacgtgagggaactccacatataaaagcctatgatgaagagagtgtggcctctctgagc
accacacaagatgagacacaagacagtttccagatgaacaatgggacaccaaattctggt
tatctcctacaaggtggatacatgttggctgcatcctactggccaaaggaccgagttatg
attaacaggctggacagcatttgtcagacagtgttgaagggtaaatggccttcagcccga
aggagctacgacagcacggcagtggcatcgttctacaccaccaaactgctggacagctca
ggggcagctgccgagtacagtgagcccagtgcacccacaccccctctggcagctgtaaaa
gaagaatatgaccaatcaccccagctgtcaaaggtgaagaagcatgtacgagaaaaggag
tttacagtgaaaatcaatgacgaaggtggtttgaaattgacttttcagaagcagggactg
tctcagaaaaggccatttgaaagcgaggagggtgcattgggtcagcagcaatatctggct
cggctacgtgaactccagaatgcttcagaaaccagccttgtcaacttcccaaaatcactt
cccaaatcaggtacttccagtcacttaacagccagtgccaatggagtcatagttgacagt
cagcctgtagtcaaaaagagacgaggaagaaggaagaatgtggagggggttgatgtcctc
tttatgaatagaaataaacagcctaaccatgttaatccaggtattaactcctgccaggtt
gctgcaggaataaacccagcactcacttacacacagtcccaaggcatgctcgatgcagag
agcccagttcctgttattaacctgaaagatggaacaaggcttgcaggtgatgatgcccct
aaaagaaaagacttagaaaggtggcttaaagaacatcctggatatgttgaagattcagga
gcttgtattcctaggatgcagctgcacgatgggaggcccaaacaaaaaagacaccgttgt
cgaaaccccaataaactggatgttaacagtttaactggtgaagaacgtgttcagctcata
aatagaagaaatgcaagaaaggttgggggtgcatttgctccccctctgaaggatttgtgc
aggttcttgaaagaaaatccagagtatggagtggctcctgagtggggagaagttgtaaaa
cagtctggcttcctccccgagggaatgtttgaccgcatcctgacgggcccggtggtgcgg
gaagaggtgagccggagggggaggcgccccaagagcgagatcgccaaggccacggcggct
gcggcggccgcctccgccgccagcgtgcccatcagccccctgctcgccaacgggctgctc
ccgggcgtggacctgcccagcctgcaggccttgcagcagaacctgcagaacctgcagtcg
ctgcaggtgacggcgggattgatgggaatgccggccggcctagctgccggaggagaggcc
aagaacgtggctgccatgttccccatgctgctgtcagggatggctgggttaccaaacctg
ctgggcatgggaggactcctgacaaagtcgacagaatccgtttcggaggagaaaaaggga
aacgagtcaaaggacatggatacaaagaaagaaaggacagaagaccaaaatacggatact
ggtggtgaaaactctgtttcgagttctccttcaacatcctctgccgctgcagctgccaat
cctctctctcttaaccctttacttttgtccaacatactttacccagggatgcttctcact
ccaggccttaatcttcatatcccagctttgtctcagtctaatatttttgatgtacagaac
agtgaaagcaatgacacaggctcagccaagcccacagaagaaaaggaggaaaattctagg
gttagagatcaggaagacaaagggggaacagagccaagctctcacaacgaaaacagcaca
gatgagggttcagagaaagcagatgcttcatctggatctgacagtacatcatcttcatct
gaggattcggattcgagcgatgaagactga
DBGET
integrated database retrieval system
