Cyanistes caeruleus (blue tit): 111934752
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Entry
111934752 CDS
T05602
Symbol
EDC4
Name
(RefSeq) enhancer of mRNA-decapping protein 4
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
ccae
Cyanistes caeruleus (blue tit)
Pathway
ccae03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccae00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111934752 (EDC4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccae03019
]
111934752 (EDC4)
Messenger RNA biogenesis [BR:
ccae03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
111934752 (EDC4)
mRNA degradation factors
5'-3' decay
Decapping complex
111934752 (EDC4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40
WD40_WDHD1_1st
Beta-prop_EDC4L
Beta-prop_HPS5
Beta-prop_TEP1_2nd
WD40_Prp19
WD40_CDC20-Fz
WDR55
Motif
Other DBs
NCBI-GeneID:
111934752
NCBI-ProteinID:
XP_023790703
LinkDB
All DBs
Position
11
AA seq
1389 aa
AA seq
DB search
MFFGVSLICWNGLCSVNENQRPSNSYNGDLNGLLVPDPLGSGDGPALAKPVHRSISLGAL
QEKQVICLSGDDSSTCLVISAKDVEIVASSDSSITSKARGSNKVKIQPVARYDWEQKYYY
GNLIAVSNSYLAYAIRAASNGSAMVRVLSVSTAERTLLKGFTGGVADLAFAHLNSNQLAC
LDEAGNLFVWRLAMDKEKIQEEILVNIKRPDNTPLNTFRRIIWCPFIPDDNEESGEEGSQ
TLALLHEDRAEVWDLDIIRTNNSSWPVEVPDIKEGFIVVKGHSTCLSEGALSPDGTVLAT
ASHDGFVKFWQIYIEGQDEPRCLHEWKPHDGRPLSCLLFCDNHKKQDPEVPFWRFLITGA
DQNRELKMWCTVSWTCLQTVRFSPDIFSSMSILPSLKVCLDLSAEYLILSDVQRKVLYVM
ELMQNQEEGKAYFSSISEFLLTHPVLSFGIQAVSRCRLRHTEVLPAEEENDSLSVEGAQG
SGAVESAAGVLIKLFCVHTKALQDVQIRFQPLHSPDTSASMPSHSSHEEFAFPDHMADLS
TEGLGSEKESVHGSQPDLRRITDLPVPADFLSLSNDAKPKLMTPDAFMTPSTSLQQIAVS
PGSSVSSLTAVTAMSSTSVTDASLPRASEDLTVSPKMQLDTSLTLSSSSSSLQTSPRSHS
VLIPGLPDKLTPKAPVPVAPGNSSLALELQEVEPLVVPQASPTRERSPDVISSASTAMSQ
DIPEIASETLQRSFAAAPSGLPGEVLEPGHHADSMASAASALHLLSPRNRHNSEHSHHSL
DMPPVEVDRLNAPSLLETALTQENASSDSVVSQPWPAAPDITRETRNSMADSPRDEVEEK
HKSSSYHRHSYHLLQHDSQDASAEQSDHDDEVASLASTSGGFGAKASAQRLPVKDWKVKA
SPRASPKLKRKGKKDDGDMNQSPRSSNNQVTPEFQDELMCILRGQQRELSELRQNQMELL
QRLTDHLDAIQSSLMGHMERVIDSQQEQEQRRLDRVLMEGQQRNGQLQEHLSQQLSQSLS
TAVCNRLERTIREEMKKTVPQCISKSMDPTISQLSNTIAAKLTAVEGTLKENITKLVKSK
NLTDSVVRATADTLQGPIQSAYREAFQSVVLPAFEKSCQSMFQQINDTFKQGTQEYIQQL
EAHLKNKKVREQEVRDPLLNQLRQLISTFQSTTEQLASTIAASVHAEVQHQLHIIVGNMQ
ESILAQVQRVIKGEVSLAMKEQQAAVTSSIVQAMRSAAGTPIPSTHMDFQSQQTHILQLL
QQGHLNQAFQQALTAADLNLVLYVCETVDTQQVFGQHPCPLSQPVLLSLIQQLSSDLGTR
TELKLNYLEDAVMHLDQSDPITRDHMGSVMNQVRQKLFQFLQVEPHNPLSKPARRLMIML
QGLVTPGMT
NT seq
4170 nt
NT seq
+upstream
nt +downstream
nt
atgttctttggtgtttctctgatctgctggaatggcttgtgttcagtgaatgagaaccag
agaccatcaaattcgtataacggggacctgaatgggctgctggtgcctgatccccttggg
agcggagatggacctgctttggccaagccagtgcatcgcagcatctctctaggagccctg
caggagaaacaagtcatctgtctttctggtgatgacagctcaacatgtttagtgatatca
gcaaaagatgtggagatagtggccagcagtgactccagcatcaccagtaaggccagaggg
agtaacaaggtgaaaatacagcctgttgctagatatgactgggagcagaaatactattat
ggcaatctgatagctgtttcaaactcttacctggcttatgccattagagctgccagcaat
ggctctgctatggtgcgggtgttgagtgtcagcactgctgagcggaccttgctgaaggga
ttcacaggaggcgtggcagacctggcctttgctcacctcaactccaaccagctggcctgc
ctggacgaggctggcaacctttttgtctggcgcctggccatggataaagaaaaaatccaa
gaggagatcttggtcaacatcaagcgacctgacaataccccactgaacaccttccggaga
atcatctggtgccctttcatcccggatgataacgaggagagcggggaagaggggagtcag
accttggcgttgttgcatgaggacagggcagaggtgtgggatttggacatcatccgaacc
aacaacagctcctggccggtggaagtgcctgatatcaaagaaggtttcattgtggtgaaa
ggccacagcacgtgcctgagcgagggagcactttctccagatggaactgtgttggccaca
gcaagccatgatggttttgtaaaattctggcagatctatattgagggacaggatgagcca
aggtgtcttcatgagtggaaaccccatgatggtagacctctttcctgcttgctcttttgt
gacaaccataaaaaacaagacccagaagttcccttctggaggtttctcatcacaggagcc
gatcagaacagagaactgaagatgtggtgcacggtgtcttggacttgtttgcagactgtt
cgcttttctcctgacatcttcagctccatgagtattcttcccagcttgaaagtctgcctg
gacctctctgctgaatatctgatactgagtgatgtgcagagaaaagtcttatatgtgatg
gagctgatgcagaaccaagaggagggcaaggcttacttcagctccatctcggagttcctc
cttacccacccagtgctgagctttggcatccaggccgtgagccgctgccggctaaggcac
accgaggtgctcccagcagaagaggaaaatgacagcttgagtgtagaaggtgctcagggc
tctggggctgtcgaatcagcagcaggtgtgctgataaaactcttctgtgttcacaccaag
gccctacaggatgtgcagattagatttcagcctcttcatagccctgacacaagtgcttcc
atgccttcccatagctctcatgaagaatttgcctttccagaccacatggctgatctgagc
acggaagggctgggatctgaaaaggaatctgtgcacggctcccaaccagacctgcggcgt
atcactgatctgcctgtgccagcagacttcctttccctctccaatgatgccaagcccaag
ctgatgactccagatgcattcatgacaccaagtacttctcttcagcagattgctgtctct
ccaggcagcagcgtcagttccctgactgcagtcacagccatgagcagcacttctgtcacg
gatgcctctttgcccagagcatcagaagacttgactgtgagccccaagatgcagctggac
accagcctcacgctcagcagcagcagcagcagtctccagaccagtcctaggagtcactct
gttcttatcccaggcctccctgacaagctaacaccaaaggcacctgttccagtcgcacca
ggaaactcctctctagcactggaactgcaggaagtggagcccttggtggtgccccaggct
tctcccacccgtgagcgctccccagacgtcatttcctctgcttccacagccatgtcccag
gatatcccagagattgcttccgagaccctgcagcgcagctttgcggcggctccgtccggg
ctccctggggaggtgctggagcccgggcaccacgcagacagtatggcctcagctgcctca
gccctgcacttgctgtctcccaggaaccgccacaactctgagcacagccaccactctttg
gacatgcctccagtggaggtggacagactgaatgctccatcattactggagactgcttta
actcaggaaaatgcatcttctgacagtgttgtgagtcagccgtggccagcagctcctgac
ataacccgggagaccaggaacagcatggcagacagcccaagggatgaggttgaagaaaag
cacaagagctcttcctaccatagacacagctaccacctcctgcagcatgacagccaggat
gccagtgcagaacaaagtgaccatgatgatgaagttgcaagcttggcttctacatcaggt
ggatttggtgccaaagcatctgcgcagaggctgcctgtgaaggactggaaagtcaaggca
tccccacgggcttccccaaagctaaagcggaagggcaagaaagatgatggggatatgaac
cagtcaccaagatcatctaacaaccaggtgacaccagagttccaggatgagctgatgtgc
atcctgaggggccagcagcgggaactctctgagctgcggcagaaccagatggaactcctg
cagaggctcacagatcaccttgatgccatccagagctccctcatgggccacatggagagg
gtgattgactcccagcaggagcaggagcagagaagactggaccgggtgctgatggaaggg
cagcagcgcaatgggcagctccaggagcacctgtcccagcagctgtcccagtccctgtcc
acagctgtgtgtaaccgtctggagaggaccattcgggaggagatgaagaagacagtgccc
cagtgcatttccaagagcatggaccctaccatcagccagctcagtaatactattgctgcc
aagctcactgctgttgaggggacactgaaagagaatattaccaagctagtgaaatcaaag
aatcttacagacagtgttgtgagggccacagctgacactctgcagggacccatccagtca
gcctacagggaggccttccagagcgtcgtgctgccagcctttgagaagagctgccagtcc
atgttccagcaaatcaatgacaccttcaagcagggcacacaggaatatatccagcagctg
gaggctcacttgaagaacaagaaggtacgagagcaggaagtgcgggacccgctgctgaac
cagctccggcagctcatcagcaccttccagagcaccacggagcagctggcgtccaccatc
gcagccagtgtccatgctgaggtgcagcaccagctgcacatcatcgtgggcaacatgcag
gagtctattttggcccaggtgcagagagtcattaaaggagaagtgagcctggctatgaag
gagcagcaagcagctgtcacctcgagcattgtccaggcaatgcgctcggcagctgggaca
cccatcccctctactcacatggatttccagtcccagcagactcacatccttcagctcctc
cagcagggacacctcaaccaagctttccagcaggctctaacagcagctgatctcaacctg
gttctatatgtctgtgagactgtggatactcagcaagtatttggacagcatccatgccct
ctgtcccagcctgtgctgctctccctcattcagcagctctcttcagatctgggcacacgg
acagaactgaagttgaactacttggaggatgcagtgatgcacctggaccaaagcgacccc
atcacccgagaccacatggggtcagtcatgaaccaggtgcggcaaaagctcttccagttc
ctgcaggtggaaccccacaaccctctgagcaaacctgcgcgtcgcctcatgatcatgctc
cagggcctggtcacccctggcatgacctag
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integrated database retrieval system
