Cyanistes caeruleus (blue tit): 111935873
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Entry
111935873 CDS
T05602
Symbol
SLX4
Name
(RefSeq) structure-specific endonuclease subunit SLX4 isoform X1
KO
K10484
structure-specific endonuclease subunit SLX4 (BTB/POZ domain-containing protein 12)
Organism
ccae
Cyanistes caeruleus (blue tit)
Pathway
ccae03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
ccae00001
]
09120 Genetic Information Processing
09124 Replication and repair
03460 Fanconi anemia pathway
111935873 (SLX4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ccae04121
]
111935873 (SLX4)
03400 DNA repair and recombination proteins [BR:
ccae03400
]
111935873 (SLX4)
Ubiquitin system [BR:
ccae04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul3 complex
Adoptor and target recognizing subunit (BTB)
111935873 (SLX4)
DNA repair and recombination proteins [BR:
ccae03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
111935873 (SLX4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Slx4
BTB
zf-C2H2_jaz
B129_C2H2-zf
zf-met
Baculo_IE-1
Zn-C2H2_12
Zf-C2H2_ZNF451_C
Motif
Other DBs
NCBI-GeneID:
111935873
NCBI-ProteinID:
XP_023792246
LinkDB
All DBs
Position
14
AA seq
1863 aa
AA seq
DB search
MDEQDNDFKELWANILSRAKKKAGDAEATKRAQNRPKSTTTRSKLRRGKAAAKSQTHHHL
PAVKETNLPRDLGPKEQTLVHEEDGDAAACETAQENGARSPLPASQLSTETTECSQRSLT
VNPLSGCSQTTLPFLPATPPGTCSSPTPKVRVAELVVERMQQFKRVAPEQLKHSSDGSVP
KAAASGDFPVRSQEQNPPEDDTHHLPSVEHDSALALALQQESKEEALASLEDAGLFFCQI
CQKDLTAMNTLRREQHVNRCLDEMEEAQMSSSSKPVVPECPICGKQFQSPQSRVSHLKRC
AVEMDVPPNLLLQAVQLQVATLGDAALQCPSNQPSRAKRKGPSTEDSRKTQKKAKIEPKD
EDLQVAIAMSRSLLEQEKQEQAKSVTNMKAVAAFPIKWKPGSDKKRRRKGASAPPPLLLQ
DPEKAQKRIQERVAMMLTEEVEFPPTPQLPISRILEDESGKAAWLMPLSKAKECFLWKSS
ALTGPCDPESFYTAALTPPIVPWKPVQNKPENLQPSVGSHQPEVSHQTQPDLSSQGPTCT
KVGGQTSDESKPGPEGDGQFLSPSQKDIQTLQDLVELAREGLTLTQWNLDTGHVQAAEQP
GEDLTPSDPPHSGFVLPSKEKSLLRSSSKRSSLRLLAQDFGAMVNNPHLSDVQFQVDSGD
VLYAHLFVLYARCPAAAQAVHSEGLVVEEDGAAPTHRVLLSDVSAEAVAAFLRYLYAADT
NFPPGLWPQLQALAARFGVRQLMAECENNPAESHVSSGVDSEDDLISVRDDEDCEDRAEN
FQDLLKSVWVGEDEEEVAMLSPECQKEDDSEMGEQELEEIYEFAATQRKMAQGEREVSKG
THCSICSDTEAVQGTNQQTEQEEVKRPESASISNSLKDLRDGSGVERSKCDLSAHEEKMQ
NINRCKGMNDPQTTIVPHHSEPQKWDGTSHGANEGGAVGECENVKDSRSPQVSHDKADHC
EEQFPGFQGDTDINDSYERLFSASQGDHCEPSPVKEVTKESGKSPSEKHVGLNDSLLFSK
SQKDCSPCKNGFCGNPSPQPYVSLFPALGSSPASPKSEGKFAREHVSTPKQNKKEKSFPF
DEIHSQKAKELGAASRKEILFSPAELPHSESNKHTHVPVLSSPSRTQDDQGRAQGIKEGD
VIVLSSSDDEMEFQQGKRLPESDSALKKMETSGHLKCTDMEQGPEIPKTDPNSSVPETEQ
RSTQVLCGNTDSVCVSVSHVKVSPEFPLSRQTGACTEIKQSPNQSPRKRLSNEMSPGTDS
SWLVPGTPVLSKSRSFSTQTEVTSSNSLKGPGSKLSTKNLAVGNSNHEMTGNLIKVHETM
LSNKHLPVENSASGRSPPSSPARESFSKNPLPVSPVDPVLLSPGYTSTESKRASISGLPT
LVPPCQQQPLEDNINISVVELEDSDREESLPSLGSSVLLCEEPPIPVPDCWHIGYLSPAR
GDSHNSGRVSRAKTSMASSPSPGSWQEQGDSPVQVQGIQGSTPLQGSPAGRRTTLHCPEK
SPVEPCSSVGSRASYLDSKIWDDWNGEEKEDELPEILPLSQRLAAAAGASRTDPVKTPES
SCQENNRSPSTPVTPMPAYSIMETPELKKELSRFGVRALPKRQMVLQLKEIFQYTHRDGD
SDFEDEIPYSQPLPQRSPAKRPRQAKAGRAAGRNRAGAPRLVGKRKQLAKASAVLPRDEA
DGASHGTGCASPKDRTKVTHHPTGAKEQERPSVSLAADGEELPASQESAGSSVDGSDISF
GSQSSFVNGFETCAFESEEEEEEFPASQAAAREEEKLEAVRCYIRSNTALYNRILFYEPI
ELADLHAELKQNGIKISKAKLLDFLDSQCITSTMARARKEQEQKRKENRKQRRRYQVKSA
PTR
NT seq
5592 nt
NT seq
+upstream
nt +downstream
nt
atggatgaacaggacaatgattttaaagagttgtgggcaaatattttgagtagggcaaag
aaaaaggctggagatgctgaggcaacaaagagggctcagaacaggccaaagagcaccaca
acacgaagcaaattaagaagaggcaaagctgctgccaagagccaaacccatcatcactta
ccagcagtgaaagagacaaacttgcctcgagatttgggtccaaaggagcaaacactggtg
catgaagaagatggtgatgctgcagcctgtgagactgcacaggagaatggagcaagaagc
cctctccctgccagccagctgagcacagagaccactgagtgtagccagaggtctctgaca
gtaaatcctctgagtggctgttcccagactaccttacccttccttcctgctactcctcca
ggaacctgctcctcacccaccccaaaggtgcgggtggcagagctggtggtggagagaatg
cagcagttcaagagggtggcacccgagcagctgaaacacagttcggatgggagcgttcca
aaggctgcagccagcggggattttcctgtcaggagccaggagcagaaccctcctgaggat
gatacccaccatctcccatctgtggaacacgacagtgctctggctttggctcttcagcag
gaatccaaggaggaagccctggcaagcctggaagatgcaggcttgttcttctgtcagatc
tgccagaaggatctcacagccatgaacaccctgcgacgagagcagcacgtcaacaggtgt
ctggatgagatggaagaagcacagatgtcatcctccagcaaaccagtggtccctgagtgt
cccatctgtgggaagcagttccaatccccccagagccgagtcagtcacctgaaacgctgt
gctgtggagatggatgtgcctcctaatctgcttcttcaggcagtgcagttgcaggtggcc
acacttggtgatgcagctcttcagtgtcccagcaatcaacccagcagggcaaagcggaaa
ggcccctccaccgaggactcgaggaaaacacagaagaaggccaaaatagagcctaaggat
gaagatttgcaggttgccatagcaatgtcacgctctctgttggagcaagaaaagcaggaa
caagcaaaatcagttacaaatatgaaagcagtggctgctttcccaatcaaatggaagcca
ggatcagacaaaaaaaggcgtagaaaaggcgccagtgcccctccacctctgctgctccag
gacccggagaaggcccaaaagaggatccaggagcgagtagctatgatgctgacggaagag
gtggagttccctcccacccctcagctgcccattagtaggattctggaggatgagtctgga
aaagcagcctggctcatgccattgtccaaagccaaggaatgctttttatggaagagcagt
gctctgacaggaccatgtgaccccgaatcattctacactgcagccttaacccctccaatt
gtaccctggaaacctgtgcagaataagccagagaaccttcagccatcggtggggtctcac
cagccagaagtgtcccaccaaactcagcctgacctcagttctcagggacccacttgcaca
aaggtcggaggccaaacttctgatgaatccaagccaggtcctgaaggagacgggcagttt
ttatccccgagccagaaggacattcagaccctgcaggatctggtggagttggccagggaa
ggactcacccttactcagtggaaccttgacacaggccatgttcaggcagcagagcagcca
ggagaagatctgactcccagtgatcctccacatagtggctttgtgctcccatccaaggag
aagagcctcctcaggagcagcagtaaaagatcttctctcaggctgttggctcaagatttt
ggtgccatggtcaacaacccccacctgagtgatgtccagttccaggtggacagcggggat
gtcctctacgcccacctgttcgtgttgtacgcgcggtgcccggcggcggctcaggctgtg
cacagcgaggggttggtggtggaggaggacggggccgcgccgacgcaccgggtgctgctg
agtgatgtgtctgccgaggctgtggctgccttcctgcggtacctctatgctgctgacacc
aacttccctcctgggctgtggccccagctgcaggctctggctgccaggtttggtgtaagg
caactgatggcagagtgtgaaaacaaccctgcagagagccatgtgtcctctggagtggat
tcagaagacgaccttatctctgtgagggatgatgaagattgtgaggacagagctgagaac
ttccaagacctcttgaagtcagtgtgggtgggtgaagatgaggaagaagtagctatgctg
agccctgagtgccagaaggaggatgacagtgagatgggagaacaagagctagaggaaatc
tatgagtttgctgcaactcagagaaagatggctcagggtgaaagagaggtgagcaaggga
acacactgcagcatctgcagtgacaccgaggcagtccaaggtaccaatcagcaaactgag
caggaagaggtaaagagacctgaatctgcttcaataagcaacagcctcaaagatctgagg
gatggcagcggtgtggagagatctaaatgtgacttgtctgcacatgaagagaagatgcag
aatataaacaggtgcaagggcatgaatgatccacagaccactattgtgcctcaccacagt
gaacctcagaaatgggatggaacatcccatggtgctaatgaagggggggctgttggggaa
tgtgagaatgtgaaggattccaggtcacctcaggtctcacatgacaaggcagatcactgt
gaagagcagtttcctggtttccagggtgatactgatataaatgacagctatgaacgtttg
ttttctgcctctcagggagatcactgtgagccttccccagtgaaagaagttaccaaagaa
tcaggaaagtcccctagtgaaaaacatgttggtcttaatgattcacttctgttcagcaag
tcacaaaaagactgctctccatgtaagaatggattttgtgggaatccaagtccccagccc
tatgtgtccctttttcctgctcttggctcttcacctgcatctccaaaatcagagggaaag
tttgccagggaacatgtgtcaacaccaaagcaaaacaaaaaggaaaaatcatttccattt
gatgaaatacactcccagaaagccaaggagctgggtgctgcatcgagaaaggagatctta
ttttctccagcagagcttcctcacagtgaatcaaacaagcacacacatgtcccagtgttg
tcatcaccaagcaggactcaggatgatcagggcagagctcaagggatcaaggagggtgat
gtgattgttttatcttcttctgatgatgaaatggagtttcaacaaggcaagaggttgcca
gagtctgactctgctctgaaaaaaatggaaacctctgggcatctgaaatgtacagacatg
gaacaaggtcctgagatacctaaaactgaccctaactcatcagttcctgaaacagagcag
agatcaacccaggtcttatgtggcaatacagactcagtatgtgtaagtgtctcccatgta
aaggtgtcccctgaattccctctcagtagacaaacaggtgcttgtacagagatcaaacag
agtccaaaccaaagccctaggaaaaggctcagtaatgaaatgtctccaggcacagacagc
tcctggcttgtgccaggaacaccagttctgagcaaaagcagaagcttctcaacacagact
gaggtcacaagcagtaattctttaaagggtccaggatctaaactcagcacaaagaactta
gcagtaggtaatagtaaccatgaaatgactggaaatttaataaaagttcatgaaacaatg
ttgtcaaacaaacatttgcctgtggagaactcagccagtggaaggagcccacccagcagc
ccagcaagagaatccttttccaagaacccccttccagtttctccagtagatccagttctc
ctctcccctggctacaccagcacagaaagcaaacgtgccagtatctcaggtttgcccaca
ctggtgcctccatgccagcagcagccactggaagataacatcaacatcagtgtggttgag
ctggaggacagtgacagggaagaaagtctgccttctctgggtagcagtgtcctgctgtgt
gaggagcccccaatccctgttcctgactgctggcacattgggtatctgtcaccagccaga
ggtgacagccacaactccggccgggtcagccgtgcaaagaccagcatggccagcagcccc
agccctggctcttggcaggagcagggggacagcccagtccaggtacagggaattcagggc
agcacccctctccaaggaagtcctgctggcaggagaacaactttgcactgccctgagaag
agccctgttgagccatgttcatcagtcggcagcagagccagttacctggactccaaaatc
tgggatgactggaatggagaagagaaggaagatgaacttccagagattcttcctctgtct
cagaggttggcagctgcagcaggggccagtcggacagatcctgtcaagactcctgaatct
tcctgtcaggagaacaacaggtcccccagcactccagtgacacccatgccagcttattcc
atcatggagaccccagagctgaagaaggagctgagcagattcggtgtccgtgctctccca
aaacgccagatggtgttgcagctgaaggagatattccagtacactcaccgggatggggac
tctgactttgaggatgaaatcccctattcccagcccctcccacagaggtccccagccaaa
cgcccgaggcaggcaaaggcaggccgggctgcgggcaggaatcgcgccggcgccccgagg
cttgtgggcaagaggaaacagcttgccaaggcttctgcagtgctccctagggatgaggct
gatggtgcatcccacggaacaggctgtgcctcacccaaggacagaactaaagtgacacat
cacccaacaggggccaaagaacaggaaaggccatcggtgtccctggcagctgatggcgag
gagctcccagcatcccaggagtcagcaggttcttcggtggatggaagtgacatctccttt
ggttcacagagttcctttgtaaatggatttgaaacctgtgcttttgagtctgaggaggag
gaagaggaatttccagcatctcaagcagcagctcgggaagaggaaaagctggaggcagta
aggtgctacatccgctcaaacacagccctgtacaacaggattctcttctatgagcccatc
gagctggctgatctgcatgcagagctcaaacagaatggcatcaaaatttccaaggcaaag
ctgctggactttctggattctcaatgcatcacatctaccatggccagagcccggaaggag
caggaacagaaaaggaaggagaacagaaaacagagaagacgataccaagtgaagtccgct
cctacccgctga
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integrated database retrieval system
