Cyanistes caeruleus (blue tit): 111936864 Help Entry 111936864         CDS       T05602                                  Symbol COL5A1 Name (RefSeq) collagen alpha-1(V) chain   KO K19721   collagen type V/XI/XXIV/XXVII, alpha Organism ccae  Cyanistes caeruleus (blue tit) Pathway ccae04820   Cytoskeleton in muscle cells Brite KEGG Orthology (KO) [BR:ccae00001]  09140 Cellular Processes   09142 Cell motility    04820 Cytoskeleton in muscle cells     111936864 (COL5A1)  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:ccae00536]     111936864 (COL5A1) Glycosaminoglycan binding proteins [BR:ccae00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    111936864 (COL5A1) BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  Collagen COLFI Laminin_G_2 Laminin_G_1 Laminin_G_3 Motif Other DBs NCBI-GeneID:  111936864 NCBI-ProteinID:  XP_023793727 LinkDB All DBs Position 17 AA seq 1834 aa AA seqDB search MIDLCDARLIWSQGRHSCRLLILLSPFLFTAEPADLLKVLDFHNLPDGITKTTGFCTSRR SSKEADVAYRVTKDAQLSAPTKQLYPASPFPEDFSILTTVKAKKGGQSFLISIYNEQGIQ QIGVELGRSPVFLYEDHTGKPGPEDYPLFRGINLADGKWHRVALSVQKKNVTLVLDCKKK ITKFLDRSEHPIIDVNGIIVFGTRILDEEVFEGDIQQLLIVADPRAALEYCEHYSPDCDT AIPDSPQSQDPNQDEYYTDGEGEGDTYYYEYPYYEDVDEAVKPETPTTKPSPPEVAAGER PETKQDYPAPTAAPERGNPGKQPKEDGAVDDPLVDEYNYETINEEYFTPMPYEDLNYNEE IDPQGGLTENAVEAELPTSTVVTYNETDAAQGGDDLDKDFTEETIKEYDGNYYDSYYDRT ASPDIGPGMPANQDTIYEGIGGPRGEKGQKGEPAIIEPGMLVEGPPGPEGPAGLPGPPGP TGPVGLMGDPGERGPPGRPGLPGADGLPGPPGTMLMLPFRFSGGGDAGSKGPMVSAQEAQ AQAILQQARLALRGPAGPMGLTGRPGPMGPPGSGGLKGEAGEMGPQGPRGIQGPPGPAGK PGRRGRAGSDGARGMPGQTGPKGDRGFDGLAGLPGEKGNRGEPGPHGPPGAPGEDGERGD DGEVGPRGLPGEPGPRGLLGPKGPPGPPGPPGVAGMDGQTGPKGNVGPQGEPGPPGQQGN PGAQGLPGPQGAIGPPGEKGPLGKPGLPGMPGADGPPGHPGKEGPPGEKGSQGPPGPQGP IGYPGPRGVKGADGVRGLKGTKGEKGEDGFPGFKGDMGIKGDRGEIGPPGPRGEDGPEGP KGRSGPNGDPGPLGPAGEKGKLGVPGLPGYPGRQGPKGSIGFPGFPGANGEKGTRGTPGK PGPRGQRGPTGPRGERGPRGSTGKPGPKGNSGGDGPPGPPGERGPPGPQGPTGFPGPKGP PGPPGKDGLPGHPGQRGETGFQGKTGPPGPPGVVGPQGPTGETGPMGERGHPGPPGPPGE QGLPGLTGKEGTKGDPGPAGLPGKDGPPGLRGFPGERGLPGPIGSPGLKGNEGPPGPPGP AGSPGERGPAGSAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGIQGPVGLPGP AGPVGPPGEDGDKGEIGEPGQKGSKGDKGEQGPPGPTGPQGPIGQPGPAGADGEPGPRGQ QGLFGQKGDEGPRGFPGPPGPVGLQGLPGPPGEKGETGDVGQMGPPGPPGPRGPSGPPGA DGPQGPPGGIGNPGAVGEKGEPGESGEPGLPGEVGLPGPKGERGEKGEAGPSGAAGPPGP KGPPGDDGPKGSPGPVGFPGDPGPPGEPGPAGQDGPPGDKGDDGEPGQTGSPGPTGEPGP SGPPGKRGPPGPAGPEGRQGEKGAKGEAGLEGPPGKTGPIGPQGAPGKPGPDGLRGIPGP VGEQGLPGSPGPDGPPGPMGPPGLPGLKGDSGPKGEKGHPGLIGLIGPPGEQGEKGDRGL PGPQGSAGPKGEQGITGPSGPIGPPGPPGLPGPPGPKGAKGSSGPTGPKGESGLPGPPGP PGPPGEVIQPLPIQAAKRTRRNIDASQLLDDGNADNYMDYADGMEEIFGSLNSLKLEIEQ MKHPLGTQHNPARTCKDLQLCHPDFPDGEYWVDPNQGCSRDSFKVYCNFTAGGETCIFPD KKSEGSKMARWPKEQPSTWYSQYKRGSLLSYVDSDGNPIGVVQMTFLRLLSASARQNITY NCYQSVAWHDATTNSYDKAIRFLGSNDEEMSYDNNPYIRAALDGCAARKGYQKTILEINT PKVEQVPIVDIMFNDFGEAAQKFGFEVGPACFLG NT seq 5505 nt NT seq  +upstreamnt  +downstreamnt atgattgatttgtgcgatgcaaggctgatttggagccaggggcgccactcctgtcgtctc ctaattcttctttctccttttctctttacagctgaacctgcagacctcttgaaggtgtta gattttcataatttacctgacggtatcacaaaaaccacggggttttgcacaagcagaaga tcttcaaaagaagcagatgttgcttacagagtaacaaaagatgctcagctcagtgcccca acaaagcagctgtatcctgcttcccccttcccagaggacttctccattctaaccactgta aaagcgaagaaaggaggtcagtccttcttgatctcaatttacaatgagcaagggatccag caaattggtgtggagttgggtagatctcctgtattcctgtatgaagaccatacaggaaag ccaggcccagaagactatcctctctttagaggcattaacctagcagatggcaagtggcac cgagtggctctgagtgtgcagaagaaaaatgtcaccttggttctggactgtaaaaagaaa atcaccaagttcctggaccggagcgagcatcccatcatcgacgtcaacggcatcatcgtg tttggcaccaggatattggatgaggaggtctttgagggtgacatccagcagctcctgatc gtggcagacccgcgggcagccctggagtactgtgagcactacagccccgactgtgacacc gccatccctgactccccccagtcccaggaccccaaccaggatgaatactacacagacggg gagggagaaggtgacacttactactacgagtacccctactacgaggatgtggatgaagct gtcaaaccagaaacccccaccaccaaacccagccctcctgaagtggctgctggagagaga cccgaaaccaagcaggattacccagcacccacagcagcccctgaaagagggaaccctggg aagcagcccaaggaggacggagcagtggatgatcccctggttgatgagtacaactacgag accatcaacgaggagtattttaccccaatgccctacgaggatctcaactacaacgaggaa atcgatccccagggtggcctcactgaaaatgcagtggaagcagaactccccaccagcact gtcgtcacctacaatgagactgatgctgctcaaggaggggatgacctggataaggatttc actgaggaaaccataaaggaatatgatgggaattattatgacagctattatgaccggaca gcctctcccgacatcggccctggcatgccggccaaccaggacaccatctacgaagggatc ggtggcccccggggcgagaaggggcagaagggggaacctgccattattgagccgggaatg ctggtggaaggcccccctggtcctgaaggcccagcaggccttccaggacctccaggacca actggacccgtgggcttaatgggagacccaggggagaggggccctcctggacgcccaggt ctcccaggagcagatggattgccaggaccaccagggaccatgcttatgttgcctttccgc ttcagcggaggaggcgacgctggctccaaaggacccatggtgtcagcccaggaggcacaa gcccaggccatcctgcagcaggccaggctggcactgaggggaccagcggggcccatgggc ctgacggggcggccgggcccgatgggacccccaggcagtggaggactgaagggagaagct ggagaaatgggacctcagggtccacgaggcatccaaggtcctcccggtcctgcaggaaag ccaggccgcaggggccgagctggcagtgacggtgcccggggaatgccaggccagacagga ccaaagggtgaccgaggctttgatggcttggctggtttgcctggtgagaagggaaacagg ggtgagccaggcccccacggccccccaggggctcctggagaggatggggagaggggagat gatggagaagttggacccagaggtctccctggagaacctggaccccgaggactgctgggc cccaagggacccccaggacccccaggcccaccgggtgtggctggcatggatggacaaaca ggtcccaaagggaatgtgggcccccagggcgagccagggcccccaggacagcaggggaac ccaggggctcagggtcttccaggtccacaaggtgccatcggtcccccaggagagaaaggc ccgctgggcaaacctggtctccctggcatgcctggtgctgatgggcctccgggtcatcct ggcaaggagggtcctcctggggagaaagggagtcagggtcccccaggtccccagggcccc attggttatccaggaccacgtggagtcaagggagcagatggagttcgtgggttgaaaggc accaagggggaaaagggtgaagatggtttccctggcttcaaaggtgacatgggcatcaaa ggagatcggggggaaattggcccccccggccctcggggtgaggatgggcccgaaggtccc aaaggtcgctctggccccaatggagacccgggtcctcttgggcctgctggagagaagggg aaactcggcgtgccaggactgcctgggtacccgggcaggcagggcccgaagggctccatc ggcttcccaggatttccaggagccaacggagagaagggcacacggggaactcctggcaaa ccaggtccgagggggcagcgtggtccgacgggtccacgtggggaaagaggccccagggga agcactggaaaacctggcccaaagggcaactctggtggtgatggccccccaggtcctcct ggagaaaggggaccaccagggcctcagggacctactggatttcctggaccaaaaggcccc cctggtcctcctgggaaggatggattgcctgggcaccctggacagagaggagaaactggt ttccaaggcaagactggccctccaggcccccctggtgttgtaggacctcagggtccaact ggtgagactgggcccatgggtgagcggggccatccaggccctccaggtcccccgggtgaa caaggccttcctggcctcactggaaaagaagggaccaagggggatcctggtcctgctggc ctcccagggaaggatggtccccccggattgagaggattccctggagaacgaggcctcccc ggccccattggttctccagggctgaaaggcaacgaaggtcccccaggccctccaggccca gccggctctccaggggagcgtggccctgcaggatcagctggccccataggattgccaggg agacctggccctcagggacctccaggacctgcaggtgaaaagggagctccaggggagaag ggtccccaaggaccggctggccgggatggcatccagggccccgtgggactgccgggccca gcaggtcctgttggacctcctggggaggatggagacaagggtgagatcggggagcctggg cagaagggcagcaaaggtgacaagggtgagcagggtcccccaggccccactggtcctcag ggtccaattggtcagcctggcccagctggagctgatggagagcccgggccccgaggacag caaggcctctttgggcagaaaggagatgaaggaccccgaggtttccccggtccccccggc cccgtgggcttgcagggcctgcctggaccacctggggagaagggagaaacgggtgacgtt gggcagatgggtccaccaggcccaccaggacccagaggtccatctgggccaccaggagca gatggtccacagggtcctcctggaggaataggaaatcctggtgcagtaggagagaagggt gaacctggggaatctggtgagcctggtctccctggagaggttggcctgccgggtcctaaa ggtgaaagaggtgaaaagggggaagcaggtccctctggtgctgctggtccacctggcccc aaaggccctccaggtgatgatggccccaaaggcagccctggtccagttggtttccctggt gaccctggtcctcctggagagcctggcccagctggtcaagatggtccccccggtgacaaa ggtgatgatggtgaacctggacagactggctcccctgggcccacgggagagccaggcccc tctggaccccctggaaaaaggggccctcctggtccagctggtcccgaaggaaggcaagga gagaaaggagccaagggggaagctggtttggaaggacctcctgggaagactgggcccatt ggtccccaaggtgctccagggaagcctggccccgatggccttcgtgggattcctggtcca gttggtgaacaaggtctcccaggatcccctggcccagatggtcctccaggcccaatgggc cctccgggtttgcctggtctgaaaggagactctggtcctaaaggggagaagggtcaccca ggtttaattggtcttattggacctccaggagagcagggagaaaagggtgacagaggtctc ccaggcccccagggctcagcaggacccaaaggagagcagggtatcacaggtccttctgga cccatcggacctccagggcccccaggattaccgggtccacctggtcccaaaggtgctaaa ggctcatcaggtcccacaggtccaaagggtgaatcaggtcttcctgggcccccagggcct cctggtcctcctggagaagtcatccagcccctgcccatccaggctgccaagaggactagg aggaacattgatgccagccagctgctggacgacggcaacgccgacaactacatggactat gccgacggcatggaggagatcttcggctccctgaattccttgaaactggaaatagagcag atgaagcatcccttgggcacccagcacaacccagcacgcacctgcaaggacctgcagctc tgccaccctgatttcccagatggtgaatactgggttgatcccaaccaagggtgttccagg gactctttcaaagtttactgtaatttcacagctggtggagagacctgcatcttccccgac aagaaatctgaaggaagtaaaatggctcgttggcccaaagaacagccttccacatggtat agtcaatacaagcgggggtccttgctctcctacgtggactctgacgggaaccccatcggg gtggtgcagatgaccttcctgcgtctcctgagcgcctcggcccgccagaacatcacctac aactgctaccagtcggtggcctggcacgatgccaccaccaacagctatgacaaggccatc cgcttcctgggctccaacgacgaggagatgtcctacgacaacaacccctacatccgggct gccctcgacggctgcgcggcaaggaagggctaccagaaaaccatcctggaaatcaacacg cccaaagtggagcaggtccccatagtcgacatcatgttcaatgacttcggagaagcggca cagaaatttggattcgaggtgggaccagcttgcttcctgggctaa

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