Cyanistes caeruleus (blue tit): 111937016
Help
Entry
111937016 CDS
T05602
Symbol
SETX
Name
(RefSeq) probable helicase senataxin isoform X1
KO
K10706
ATP-dependent RNA/DNA helicase, senataxin [EC:
5.6.2.5
5.6.2.3
]
Organism
ccae
Cyanistes caeruleus (blue tit)
Brite
KEGG Orthology (KO) [BR:
ccae00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccae03021
]
111937016 (SETX)
Enzymes [BR:
ccae01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
111937016 (SETX)
5.6.2.5 RNA 5'-3' helicase
111937016 (SETX)
Transcription machinery [BR:
ccae03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
111937016 (SETX)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_11
AAA_12
SEN1_N
AAA_19
AAA_30
Viral_helicase1
UvrD-helicase
AAA_22
SLFN-g3_helicase
AAA_16
ResIII
nSTAND3
RNA_helicase
Motif
Other DBs
NCBI-GeneID:
111937016
NCBI-ProteinID:
XP_023793997
UniProt:
A0A8C0U6Q2
LinkDB
All DBs
Position
17
AA seq
2754 aa
AA seq
DB search
MSTCRWCTQSGADTTEFLKHYAAHRLSQEDFEGSNDDLSYCLECVVEYHKAREECPRLHE
DLWDLETSRLIAHMEKSMNEETGEDDELFLIDEHGETRLSGYVGPNFENNLRVPLLEILK
YPYLLLHKKVSELCVEVLCRMELSHDSFQVFEKYPGIYLFLVHPNEVIRRWAILTARNLG
KVDRDDYYDLEEVLTCLFKVIELGLFENPDIYSSSMFEKGKLILLPAHLYDTANYKNYWL
GICMLLSVLEEQAMDSLLLGPDKQNDFMQSILHTMEKEAADDSTDPFWPALHCFMVILDQ
LGSKVWGQLIDPVQAFQTIINSVSYNNEIKNIRSSFRRTKSEPESDYGDDMISCSQIVYN
YNTEKPQKDTGWKAAICPEYCPNMYEDMQTLANMLQSDIGRDMRVHHSTFLWFIPFVQSL
MDLKDLGVAYIVEVIHYLCSEIKDILIERIQQCDKISEFFLLILVSIVELHRSKKCLHLL
WISSQEWVEAVVRCATLPSRAFTRCSEKALGLCAKGSGAGSFQAPSSVQHACVQLIRSLL
KEGYQIGQHALCKQYLDKLNLLLRGNRAVGWQLSSQETQELQMCLKQVIRSIKGKALSTS
LVGGSSSNSTALPTGSIKHERNVCDDGYKTTGHDREDLYSSFVTSKEGRDCPENPFHRRK
NAWEEECRDACRSSTSCTSTESLLMNIKKEHDDLTAQEFVFPQNSSATKVCGKVQENRNY
DLVPGKCNTDDQCFNSSTHPSDFRRGREFEMKHKAELKTPPHQCAQTHLDCPSSRNCKSL
QETSANSEFQSRLVPTKQASKEASLDSSNSSRNKPGVQGKEDDSTLLVGHNDTSLNKVST
EEKSGSLLLSFFKRNTNVQTPNQEQPNLNDLDKYDCKNQFLETSCRDKIPAYGYFPFSSE
NKRNMIRPLSVKCESSDRLFEFSEYFKRENGSMGKKEEDFVKTVSKDDALSDPQVDRELS
KLSLAAYAKSVNFPVESNQESSVYHNVSEIKRKVKGSVRSSNEGQSTRCPSGADGPSNQV
IVISDSSDEEKSMAEKEEIKTKSENVCAEPSSTSSSISDSDIKRESKSPGSPMLLDDCDS
QYFEFETEAEVFSAWQDTQAYAVETAQEYKQDHVSPAAETSNSDDCLNNDLNDLGYDLYY
FSDDTMEEATSSIEKQAEDTSHQKEAGGTKEVTNSTLEESVGKEDAKGQLEKGADKGIAK
GFTPDSKLPEPTASTSPISLASKLALKKNSTSPQKPTAKCKSAPAVQRSPKKPPVVKTAK
NKPLQSMTERSQPGRSMPAVVPPRKVRQSPAPSSTVERLGLKKGPRKAFDLSQPSLESLA
QLRSHGKAAGRIGVAQKKRTKQIEAQRLSVKRNKKLLICQDQKYPRQTRSKRSVKNPAGS
SEGRNKVTKACAKAVEQKPQGFELSAIKESVQNQREKKREETACPSASERKFESLSVEEM
ASASKMPRSSDWNRKWEGNSVVVPPVPMDSSLSSTALGDDKDESSEKGCSVLPEGEMKTS
KENGCKSDESSDEGDDNLFLTQLDPVDMELCSQEESVEDAAIGSKTPEEMDGDESLQQNE
PSAVVKCKDKDCMEQVEKPGEYCSKHPTTGPGADHVFAKPSLPPPKTKKPSTIKIFSSSS
SSRNAAFSKDLEDVRKLPPPSKNKVNAAKPMVVRPPLYPKPAPAGNPTCRSPSFSNVPQP
LGSSNVLQSQNRHYDNALNIYRERSQETYSSFLGAQQRDYSIFVNQVLKWTYEMFANFSL
FGTPNNLLQSIVASVPVQFQGYNEYFNTFFPLMMLNAFETLAQEWVENQKVREKSYCFYL
QNFSADMNTAHFTAHLRESDLARQLHPKEDDLILLVVHKEKDTFGEESGMDSHIVNHVGL
VTRFSRASGYANRQKEQQTACHLTVQTRGNLSFFIHKQVKCVVVGSLVTTHRKFKGLLLL
SRSPLAKPIINPSYNDFCPRDLPVASGSAASHMNEYNEDQKRAIETAYAMVKQHPGLPKI
CLIHGPPGTGKSKTIVGLLSRVLRENTRNEKTARKKNSKIKPNRFLVCAPSNAAVDELMK
KIIIAFKEKCQNKQEPLGNCGDIKLVRLGAEKSINNEVRGFSLDKQVEHRMKRKPGDCDQ
DIQKKKEALDQKLDMLSRERAMHKCEKRESQMLNDEIGRLAKERQQLASQLKEVRGHSQK
VQADIILESDIICCTLSTSGGSLLESAFSRQGLDPFSCVIVDEAGQSCEVETLIPLIHRC
NKLVLVGDPKQLPPTVKSVKAQQYGYNQSLMARLQRHLEEQVQRNVLCSLPVVQLTVQYR
MHPDICLFPSNYVYGRTLKTAKAIEENRCSSEWPFQPYLIFDVADGREERDNDSYSNPRE
VKLVMELIKTIKEKRKDLGLRRIGIITPYSAQKKKIQEQLDSVFKNNSPGEVDTVDAFQG
REKDCIIVSCVRANSSEGSTLAYVQANSTKGSIGFLASLQRLNVTITRARFSLFILGRLQ
TLMEDKNWNHLIQDAQKRGAIIRTTEKNYKKEALRILKLRPPGQPPAKGGTMTSPVLQAG
SSSGKRSEPGNSGNSPRELAAGPGHAVPQGSRGPTQPAVAAAADSRRGSAPAPGGAPAAD
SRRGSAPAPVGAPAADSRRGSAPASVGAAALAAIPEKPRDPRLASLASRTEAKGTEQPSK
DGHRSAQSNPGSTPQQGLDVSSAARDQICRTENARKAQQTAGQCSLLPTAPHTAQHECDW
RAAVSKSGSKAPSEGGQSRSSQWNKDSRGLPRRPSQESPENTESSSAKRRKIFP
NT seq
8265 nt
NT seq
+upstream
nt +downstream
nt
atgagcacatgccgatggtgcacacagagtggtgctgacaccaccgagttcctgaagcac
tatgctgctcacaggctttcccaggaagattttgaaggatccaatgatgacctctcttac
tgcctggagtgtgtggttgaatatcacaaagcaagggaagaatgtccaagactgcatgag
gacttgtgggacttggaaacttcccgcctcattgcccacatggagaaatccatgaatgaa
gaaacaggagaagatgatgagttgtttctgattgatgagcatggggagacacgtctgtct
ggttatgtgggcccaaattttgagaacaacctgcgagtgcccctgctggaaatactgaaa
tacccatatctgctgctgcacaagaaagtcagtgagctgtgtgtagaagtgctctgtaga
atggaactaagtcacgactcctttcaggtctttgagaaatacccaggaatttatctcttt
ttggtacacccaaatgaggtgattcgtcggtgggccatcctaacagcaaggaatttagga
aaggttgacagggatgattactacgacctagaggaagtgctgacttgtttgttcaaagtt
attgagttggggctttttgagaatccagatatttacagctcttcaatgtttgaaaagggt
aaactcatccttctgccagctcatttgtatgatacagccaactacaaaaactattggctg
ggaatttgcatgttgctgtcagtgctggaagaacaagctatggactctttgttactgggc
ccagacaaacaaaatgattttatgcagtctatacttcacactatggagaaagaagcagct
gatgattctactgaccctttctggcctgccctgcactgtttcatggttattttggatcag
ctcggatctaaagtttggggtcagctgattgatcctgtccaggcctttcaaaccataatc
aacagtgtgagctacaacaatgaaatcaagaatattcgcagtagctttaggaggacaaag
tctgaaccagagtcagactacggtgatgacatgatttcttgcagtcagattgtgtataat
tataacacagaaaagcctcaaaaggacactggctggaaggctgccatttgcccagagtac
tgccccaacatgtatgaagatatgcagaccctggctaacatgcttcagtctgacattggc
agagacatgcgtgtccatcacagcacattcctctggttcatcccttttgttcagtccctt
atggatctcaaggacttgggtgtagcctatatagtagaggtcatccactacctctgctca
gaaatcaaagatatcctcatcgaaagaatccagcagtgcgacaaaatctccgagttcttt
ctcctcatcttggtgtccattgttgagctacacagaagtaagaagtgcctgcatttgctg
tggatcagctcccaggagtgggtggaggcggtggtgaggtgtgccacgctcccaagcaga
gcgttcactcggtgcagcgagaaggcgctggggctgtgtgcgaagggctcgggtgcaggg
tctttccaggcccccagctcggtgcagcatgcctgtgtgcagctcatccgcagcctgctc
aaggagggctaccagatcggccagcatgccctgtgcaagcagtacctggacaaactcaac
ctcctcctgcggggaaatcgagctgtggggtggcagctgagcagccaggaaacccaggag
ctgcaaatgtgtttaaagcaagttataagaagtataaaaggcaaagcactgagcacctct
ttggttggaggaagcagttcaaactcaacagctttgccaactggctctataaagcacgag
aggaatgtgtgtgatgatggatacaagacaactggacatgacagggaggacctttattca
tcatttgtcacgtcaaaggaaggcagagattgtccagagaacccttttcataggagaaag
aatgcctgggaagaggaatgtagagatgcatgtagaagttcaacatcttgcacatccaca
gaaagtctcttgatgaatattaaaaaggaacatgatgatttgacagctcaggagtttgtc
ttccctcagaactcttcagcaacaaaagtatgtgggaaagttcaggaaaataggaactat
gatcttgtgccagggaaatgcaatacggatgatcagtgcttcaattcaagcactcatcct
tcagatttcaggagaggcagagagtttgaaatgaaacacaaagcagaactcaaaacacca
cctcatcagtgtgcacaaactcatcttgattgtccctcttcaaggaattgcaaaagtttg
caagagacaagtgctaacagtgagttccagtccagactggtccccactaaacaggcatcc
aaggaagcatccctagattcctctaattcctctagaaataaacctggtgtgcaggggaag
gaagatgacagcactttgcttgtagggcataatgacacctcactgaataaagtatcaaca
gaagaaaagtcaggttcattgttgctgtctttctttaagagaaacactaacgtgcaaact
ccaaaccaggagcagcctaatttaaatgatttggataaatatgattgcaaaaatcaattt
ttggagacctcttgtagggataaaatcccagcatatggttattttccatttagctctgaa
aacaagaggaatatgatcaggccactgtcagtgaagtgtgaatcaagtgacaggttgttt
gagttttcagaatatttcaagagggaaaacggttccatggggaagaaagaggaggatttt
gtgaagacggtttccaaagatgacgctttatcagacccccaggttgatagagaactcagt
aaattatctttagctgcttatgccaagagtgtcaattttcctgttgaatccaaccaggaa
agctcagtgtaccacaatgtgtctgagattaaaaggaaagtgaaaggttctgtaagatct
tccaatgaaggccaaagtaccaggtgtcccagtggtgcagatggccctagcaatcaagtc
attgtcatttcggattcttctgatgaagaaaaaagcatggctgagaaggaggaaataaaa
accaagagtgaaaatgtgtgtgcagagccatcttcaacttccagcagcatttctgatagt
gacattaagagagaatcaaagtctccaggctctcccatgttactggatgactgcgattct
cagtactttgaatttgaaacagaagctgaggttttttcggcttggcaagatactcaagcg
tatgctgtggaaacagctcaggagtataaacaagatcatgtttcaccagcagctgagaca
agtaattcagatgactgcctgaacaatgacttaaatgatttgggctatgatctgtattac
tttagtgatgacaccatggaagaagcaacaagctcaatagaaaagcaggcagaagatact
tctcatcagaaagaagctggtggtacaaaagaagtgactaattcaaccttggaagagtca
gttggcaaggaagatgcaaaaggtcaactggagaaaggtgcagacaaaggtatagctaaa
ggcttcaccccagactcaaaattgcctgaacccacagcttctacatctcccatctcatta
gcttcaaagttggcccttaagaaaaatagcacaagcccgcagaagcccacagcaaaatgt
aaatcagcaccggctgttcagagaagtcctaaaaaacctcccgttgttaaaacagccaaa
aataaaccactccaaagcatgacagaacgttctcagcctggcaggtcaatgcctgctgtg
gttcctccaaggaaggttcggcagagtcctgctccatcatcaactgtggaaaggcttggc
ctgaagaagggcccccgcaaggcatttgacttgtcccagccctccctggagagcctggct
cagttgcgcagccacggcaaagctgcaggcagaattggagttgcacagaagaagaggacc
aaacagatcgaggctcagcgtttgtctgtaaaacgtaataaaaaactgctcatctgccaa
gaccagaagtatccaaggcagacaaggtccaaaaggagtgtgaaaaatcctgcaggaagt
tcggagggcagaaacaaagttaccaaagcgtgtgcaaaagctgtggaacaaaagcctcaa
ggttttgaactgtcagctattaaagaatctgttcaaaaccaaagggagaaaaaaagagaa
gagactgcttgtccttctgccagcgagagaaaatttgagagcctctctgtggaggagatg
gcaagtgcctctaaaatgcctcgttcttcagactggaacagaaaatgggagggtaacagt
gtggtggttcctcctgtccctatggattcaagtctctcttccactgcacttggagatgat
aaagatgagtcttcagagaaaggttgcagtgtcctgcctgagggtgagatgaaaacatcg
aaggaaaatgggtgtaaatcagatgaaagcagtgacgaaggtgatgataatctgttttta
acccagttagatcctgtggacatggagttatgttctcaggaggaaagtgttgaagatgct
gctataggtagtaagaccccagaggaaatggatggtgatgaaagccttcagcagaatgaa
ccctcagctgttgtgaaatgtaaggacaaagactgtatggaacaggtggaaaagcctgga
gaatactgcagtaaacacccaaccaccggcccaggggcagatcatgtgtttgccaagcct
tctctcccaccacctaaaacaaagaagccttccactatcaaaattttcagctcatcaagt
tcttcacggaatgcagccttcagcaaagatcttgaagacgtcagaaagttgcccccacct
tcaaaaaacaaagtgaacgcggccaaaccaatggtggttaggccaccactgtatccaaaa
ccagcaccagcaggaaatccaacatgcagatctccaagtttcagcaatgtacctcagcct
cttggttccagtaatgttctccagtcacaaaatagacactatgacaatgctttaaatatt
tacagagagcgtagccaagaaacctactcctcttttcttggtgctcagcagcgcgattac
agcatttttgttaaccaagtcctaaagtggacttatgaaatgtttgcaaacttcagcctc
tttggaactccgaataaccttctgcagtccatagtagcctctgttcctgtccaatttcaa
ggctacaatgaatattttaatacattttttcctttgatgatgctcaacgcttttgaaaca
ctggcacaagaatgggtagaaaatcaaaaagtgagagagaaaagttactgcttctactta
cagaacttttctgctgacatgaatacagcacattttacagctcatctacgagagagtgat
ttggcaaggcagcttcatccgaaggaggatgacttaatccttttggtggtccacaaagag
aaggacacttttggggaagaaagtgggatggacagccacatagtgaatcatgttggcctt
gtgacacgattttctcgtgcatctggctacgcaaatagacaaaaagagcagcaaactgct
tgtcatcttactgtgcaaacccgaggcaatttgtcattcttcatccataagcaagtgaag
tgtgtggtggttggctccctggtgaccacacacagaaagttcaaaggtttgctgctgctg
agcaggagccccctggctaaacccatcataaatccaagttacaacgacttctgtcccaga
gatctgcctgttgcctcaggaagtgctgcttcacatatgaatgaatacaatgaagatcaa
aagagagccattgagacagcttatgccatggtaaaacaacacccaggacttcccaagatt
tgccttatccatggaccacctgggacaggaaagtcaaaaactattgtaggactcctgtcc
cgtgttttgagagaaaacactaggaatgagaaaacagctcggaaaaaaaattccaagatt
aagccaaaccgttttctagtttgtgcaccatcaaatgctgctgttgatgaactcatgaaa
aagatcatcattgcatttaaggaaaaatgccaaaacaaacaggagcctttgggaaattgt
ggtgatatcaaattagtgcgacttggtgctgaaaaatcaatcaacaatgaggtccgggga
ttcagcctggataagcaagttgaacacagaatgaaacgaaagccgggtgactgtgaccag
gacattcagaagaagaaggaagctctggaccagaagctggacatgctctctcgagagcgt
gccatgcacaaatgtgagaagagagagagtcaaatgttaaatgatgaaattggcagactt
gcaaaggagaggcaacaactcgcttctcagctaaaggaggttcgggggcactcccagaaa
gtgcaggcagacatcatcctggagtctgacatcatctgctgcacactgagcaccagcggg
gggagcctgctggaatctgctttctcccggcaggggcttgaccccttcagctgtgtcatc
gtggacgaggcagggcagtcctgtgaggtggaaacactgattccactgatccatcgctgt
aataaacttgtcctcgttggagatcccaaacagctccctcctactgtcaaatcagtaaaa
gctcagcagtatggctacaaccagtctctgatggcccgtctgcagaggcacctggaggag
caagtgcagaggaatgtgctgtgcagcctgcctgtggtgcagcttactgtgcagtacagg
atgcacccagatatctgcctcttcccatccaactatgtttatggcaggactctaaaaact
gccaaggcaatagaggagaacagatgttcttcagagtggccattccaaccctacctgatt
tttgatgtagctgatggtcgtgaggagcgagacaatgactcttacagcaatcctcgggaa
gtgaaactagtgatggagttaattaaaacaattaaggaaaaaaggaaggatctgggcctt
cgtcgcattggaataattaccccttacagtgcacagaaaaagaaaattcaggaacaactg
gacagtgtgttcaagaataacagcccaggagaagtggacacagtggatgcattccagggc
cgagagaaggattgcatcatcgtgtcctgtgtgcgggctaacagctccgagggctccact
ctggcatatgtgcaggcaaacagcaccaaaggatccattgggtttctggcgagcctccaa
cgactgaatgtcaccatcacccgagcccggttcagcctcttcatcctgggccggctgcag
acactcatggaagataaaaactggaatcacttgattcaggatgctcagaaaagaggtgcc
attattaggacaacagaaaaaaattacaagaaagaggctctgaggattttgaagctcagg
ccaccaggacagcccccagccaaaggagggacgatgacatctcctgtgcttcaggctggt
tcttccagtggcaagaggagtgagcctggaaattctgggaacagcccacgggaacttgct
gctggccctggccatgcagtgccccaaggaagccgagggcccacacagcctgcagtggct
gcagctgcagattccaggaggggcagtgcccctgcacctgggggggctccagctgcagat
tccaggaggggcagtgcccctgcacctgtgggggctccagctgcagattccaggaggggc
agtgcccctgcatctgtgggagctgcagcacttgctgccattccagagaagccacgggac
ccaaggctggcaagcctggccagtcgaactgaagccaaaggcacggagcagccctcgaaa
gatggccatcggtcagcccagagcaatccagggtcaacaccacagcaaggcctggatgtg
tcctcagctgccagggatcagatttgcagaacagaaaatgccaggaaggcccagcaaaca
gcaggacagtgcagtttgcttcctacagcccctcacacagctcagcacgagtgtgactgg
agagcagctgtgtccaaaagcggctccaaagctcccagtgaaggaggtcagagcagaagc
agtcagtggaacaaagactctcgtggtttaccaaggagaccatcccaggaatcaccagag
aacacagaatcaagctctgccaagagaagaaagatttttccctga
DBGET
integrated database retrieval system
