Cyanistes caeruleus (blue tit): 111937714
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Entry
111937714 CDS
T05602
Symbol
LIG3
Name
(RefSeq) DNA ligase 3 isoform X1
KO
K10776
DNA ligase 3 [EC:
6.5.1.1
]
Organism
ccae
Cyanistes caeruleus (blue tit)
Pathway
ccae03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
ccae00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
111937714 (LIG3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ccae03400
]
111937714 (LIG3)
Enzymes [BR:
ccae01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
111937714 (LIG3)
DNA repair and recombination proteins [BR:
ccae03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Short Patch-BER factors
111937714 (LIG3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
LIG3_BRCT
zf-PARP
DNA_ligase_A_C
BRCT_2
RNA_ligase
Synaptonemal_3
aRib
DUF3802
Motif
Other DBs
NCBI-GeneID:
111937714
NCBI-ProteinID:
XP_023794937
UniProt:
A0A8C0U6J0
LinkDB
All DBs
Position
19
AA seq
980 aa
AA seq
DB search
MPTGGRTLSHAARALGRGTALFCPRPQLPLPRPFSSSGGVSPGCWCPLLFPRVSVPSPKQ
RRSFPLSLLLGSWLRSACAAAGDMAEQRYCVDYAKRGTAGCKKCKEKIVKGMVRIGKIVP
NPFTESGGDMKEWYHVKCIFEKLDKARATTKKIEDITDLEGWEELQDEEKEIINKYISEA
NSKTGGTPKKKVIVQAKLTATGQLTTKDPPKKFSGFTAKPKNSEDAPANSAHKPSLSAAR
CDPKHKDCLLREFRKLCAMVAEKPSYNVKTQIIQDFLRKGSAGDGFHGDVYLTIKMLLPG
VIKIVYNLNDKQIVKLFSRIFNCNQEEMVRDLEQGDVSETIRIFFEQSKTCPPAAKSLLT
IQEVDEFLIQLSKLTKEDDQQSVLQQISRRCTGNDLKCIIRLIKHDLKMNAGAKHVLDAL
DPNAYEAFKASRNLQDVVERVLQNQQESEKVPGLKRTLSVQASLMTPVQPMLAEACKSIE
YAMKKCPNGMYAEIKYDGERVQVHKNGDHFSYFSRSLKPVLPHKVAHFKDFIPQAFPGGQ
SMILDSEVLLIDNKTGKPLPFGTLGVHKKAAFQDANVCLFVFDCIYFNDISLMDRPLCER
RKFLHDNMVEIPNRILFSEMKHVTKASDLADMITRVIREGLEGLVLKDLKGNYEPGKRHW
LKVKKDYLNEGAMADTADLVVLGAFYGQGSKGGMMSIFLMGCYDPKSEKWCTVTKCSGGH
DDATLARLQTELDMVKISKDPSKIPRWLKINKIYYPDFIVPDPKKAPVWEITGAEFSKAE
AHTADGISIRFPRCTRIRDDKDWQTATNLQQLKELYQLSKEKADFNVTAGEEDESTAGSS
GENDGNSRSSTPHSSIKSPPSKSPAKAQKAEESKAVIGSPQKCEEKRGEKRKASEMEDNG
KKQPLLDIFTGVRLYLAPSVKDFDRIRRYFIAFDGDLVEEFDTASATHVIGDIDDNPGAQ
RVTPRWIWECIRKRRLVAPC
NT seq
2943 nt
NT seq
+upstream
nt +downstream
nt
atgcccacgggcggcaggacgctgtcacacgctgcccgcgctctcggcaggggcacagcg
ctgttctgccctcgcccacagctccccttgccccgaccgttctcctcctctggcggagtc
agccccggttgttggtgcccgctgctgttcccccgtgtctccgtgccatccccgaagcag
cgccgctcttttcccctctccctgctcttgggcagctggctgcgctcggcctgcgcggct
gcgggggacatggcagagcagcggtactgtgtggactatgccaagcggggcaccgcgggc
tgcaagaagtgcaaggagaagatcgtgaaggggatggtgcgcattgggaagatcgttccc
aatcctttcaccgagtctggaggggacatgaaggagtggtaccatgtcaagtgcatcttt
gagaagctggacaaggcccgggccaccaccaagaaaatagaagacatcacagacttggag
gggtgggaagagctacaggatgaggagaaggaaataatcaacaagtacatctcagaagcc
aattccaagactggaggtaccccgaagaaaaaggtgatagtgcaggcaaaactcactgcc
acaggacagctgaccacaaaagatccaccaaagaaattctctggattcactgccaagcca
aagaattcagaagatgcccctgcaaactctgcccacaaacccagcctgtctgcagccagg
tgtgatcccaagcacaaggattgcctgctgcgggaattccgcaagctctgtgccatggtg
gctgagaagccaagctacaacgtgaaaacacagatcatccaggacttcctcaggaaggga
tctgcaggagatggttttcatggtgatgtatacctgaccattaagatgctgttaccaggt
gtcattaaaatagtttacaacttgaatgataagcagattgtaaagctgttcagcaggatt
tttaactgcaaccaggaagaaatggtccgggacctggagcagggagatgtttccgagacc
atacggatcttcttcgagcagagcaagacctgtcctccagcagccaagagcctcctgacc
atccaggaggtcgatgaattcctcatccaactgtccaagctcaccaaggaggatgaccag
cagagtgtcctgcagcagatcagccgcaggtgtacgggcaatgacctgaagtgcatcatc
aggctaattaaacatgacttgaaaatgaatgctggagcaaagcacgtgttggacgctctg
gatcccaacgcctacgaggcgttcaaggcctcgcggaacctgcaggacgtggtggagcgg
gtgctgcagaaccagcaggagtctgagaaggtgccaggcctgaagaggaccctgagcgtg
caggcctcactcatgaccccagtgcagcccatgctggctgaggcctgcaagtccatcgag
tacgccatgaagaagtgtcccaacgggatgtacgccgagatcaagtacgacggcgagcgc
gtgcaggtgcacaagaacggggatcacttcagctacttcagcaggagcctcaaacctgtg
ctcccccacaaagtagcccattttaaggatttcatcccccaggctttccctggtgggcaa
agtatgatcctggattcagaagttctcctgattgacaataaaactggcaagccacttcct
tttgggactcttggtgtgcacaagaaagctgctttccaggatgccaacgtttgcctgttt
gtgtttgactgcatctacttcaatgacatcagcctgatggacaggcccctgtgtgaacgg
cgcaagttcctgcacgacaacatggtggagatccctaacaggatcctgttctcagagatg
aaacacgtcacaaaagcttcagatctggcagacatgatcacccgagtcatccgggagggg
ctggaagggctggtgctgaaggatttaaagggaaattacgaaccagggaaacgccactgg
ctgaaggtgaagaaggattatctcaacgagggggcaatggctgacactgctgacctggtg
gtgctgggggctttctatggacagggcagtaaaggtgggatgatgtccatcttcctcatg
ggctgctacgaccccaagagtgagaagtggtgcacggtgaccaagtgttctggtggccac
gatgacgccacgctggcacgtctgcagacagagctggacatggtgaagatcagcaaggat
ccaagtaaaattccaaggtggctaaaaattaacaaaatctactacccagacttcattgtc
ccagatccaaagaaagccccagtgtgggagatcacgggggccgagttctccaaggccgag
gcccacactgcggacgggatctccatccgcttcccacgctgcacccgcatccgcgacgac
aaggactggcagacagccaccaacctgcagcagctgaaggagctgtaccagctctccaag
gagaaggctgatttcaatgttacagctggggaggaagacgagtccacagctggcagcagt
ggagagaatgatgggaattccaggtcttccacacctcacagcagtattaagagtccccca
agcaagtcacctgcaaaagcccagaaggcagaagagagcaaagcagtgattggatcccct
cagaaatgcgaggagaaacgaggggagaagagaaaagcatctgagatggaggacaatgga
aaaaagcagccactgctggacattttcacgggggtgaggctctacctggcgccctccgtc
aaggacttcgaccgaatccgccgctacttcatcgccttcgacggggacctggtggaggag
ttcgacacggcctcggccacccacgtgattggggacattgatgacaaccccggggcgcag
cgggtgactcccaggtggatctgggagtgcatccggaagcgcaggctggtggccccgtgc
tag
DBGET
integrated database retrieval system
