Cyanistes caeruleus (blue tit): 111938742 Help Entry 111938742         CDS       T05602                                  Symbol NPHP4 Name (RefSeq) nephrocystin-4 isoform X1   KO K16478   nephrocystin-4 Organism ccae  Cyanistes caeruleus (blue tit) Brite KEGG Orthology (KO) [BR:ccae00001]  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    03037 Cilium and associated proteins [BR:ccae03037]     111938742 (NPHP4) Cilium and associated proteins [BR:ccae03037]  Primary cilia and associated proteins   Nephronophthisis-related proteins    111938742 (NPHP4) SSDB OrthologParalogGFIT Motif Pfam:  NPHP4_C2_3rd NPHP4_C2_2nd Ig_NPHP4_1st Ig_NPHP4_4th Ig_NPHP4_2nd Ig_NPH4_3rd NPHP4_SK DUF3866 Motif Other DBs NCBI-GeneID:  111938742 NCBI-ProteinID:  XP_023796427 LinkDB All DBs Position 21 AA seq 1225 aa AA seqDB search MMAGKGDGSSQHLSCGFGIIPLFHSGSEVTDSATEDRALKLYHGTPRALLHPRFQNPVEK NKYMTVMEKSYLQYALKSHQPLEAIFHLLPENLLISGLQTVPGLLPARGDTGDCLQKPRL MKTVTCYLERLFIQLYPSLEEFEEELLDLLNSDRLLQANTGSDGEELVVRERRLHVGVHN GLRFVQAPQVAVLVPGAELSPSGCQRVPSSGARDAGQALVLRSRIQLSEMVPHPAFGVCF QLEYVFCSTGRAGGKALSGSARSEAADMRSVRWAVWSPALGTGDTDVVLPLRGGARRGPC QALVYRTPPSSRQGKHVESGTVQFRVSTDSEEHLVSAAELLCKDRDELKQPPTPSLRVPT PRRVPVSPRGPGLSVSQLVASPRGTGQTLQQDGGITHLETNLGSPDTEPCASDQLRALPF TPLQLPMAAVGLQASSFHVSLSRASLARLHAAGFPDILDRNQEPVEISEPVELGSFNLQL EEADPLQGNEIVLQFLAFDRDAQGSVEGLWPRTVFLTFQFYRFPPVTTPRLQLVSTDGGL ATGLAVPAQLLFRVNEDGTLTKPPGLQLKYMVDPAFLRPGEQRWFLRYLAEHSLQIDVWD GDSLLHVGSAAIKLEPLLRQGRMAVRTYHELEVATTEYEPDGTVMGREALRHGALRPLGV RVAVRGRLHLCLANVGHPCEGTPGQLPFHSRIVTAPDSTVTTPGGGWNSLNTPGGRTAWA RRLVDVDNELQAALRSRRPEGWPKQRAWDLQVIDAYRDHIKGESIYQMLSQAITATRTVH AVLGTAEFFEFALKNPYTVQHTVTIEVNDPELSVILDPREWRHFKELTKSVTPVEEDMFH LRDDLKPQVYLRPSETVHIPFKYQTFSADPAVVAAQGPAGLGTGAGGDTHSLGKSGAKQT KLIQVTFQVSGGKPIALLRVKVEPQPHVVDQTFRFYHPELTFLKKTIRLPPWYTLPGTPV GVPGGQPEMFVRCSDPDIICETKSLGPGEPQDIFLKVAGGPSPQIKKFFVAIYMDTWLAA PVQIWQFYLHSLQRLDVACTAGQLTRLSLLLRGTAAPRRVRAFTSHPQELEMDPSGAFLL PANGIQDLYIGVRPRRAGSKFIYLNLVDVESHQLVSSWLLCLSCRQPLISKAFEISLPVG GGKGCNKRITYTNPYPSPRLYFLCTNRPDLLQFKEDSFEVAGGEVYTIGLRFAPSQTVGE EEILIHINDHEDKNEETFCVKVLYQ NT seq 3678 nt NT seq  +upstreamnt  +downstreamnt atgatggctggcaaaggggatgggagctctcagcatctttcctgtggctttggaatcatt cccctcttccacagcggatcagaggtgacagactcagccactgaggacagagcgctgaag ctgtaccatgggacaccacgtgccctattgcacccgcgcttccagaaccctgtggaaaag aacaaatacatgacagtgatggagaagagctacctgcagtatgccttgaagtcccaccag cccctggaggcgatatttcacctccttcctgaaaacctgctgatatctgggctacagact gttcctggcttgctgccggcacgtggagacacaggcgactgcttgcagaagccccggctg atgaagacagtcacctgctatctggagcggcttttcatccagttgtacccttctctggag gagtttgaggaggaactgctggatttactgaacagtgatcgcttacttcaggctaacact gggtcggacggtgaagagctggtggttcgggagcggcggctgcacgttggcgtccacaat ggcctgcgcttcgtccaggcaccgcaggtcgctgtgctggtgccaggggcagaactgtca ccgagtggctgccagagggtgcccagctctggagccagggatgcaggtcaagccctggtg ctgaggagccgcatccagctgagtgaaatggtccctcacccggcattcggggtctgcttc cagctggaatatgtcttctgcagcacagggagagctggtgggaaggccctgtctggcagt gcccgcagcgaggcggccgacatgcgctcggtgcgctgggctgtctggagccctgccctg ggcaccggtgacacggacgttgtcctgcccctgcgtggtggtgcccgccgtggcccctgc caagccttggtctaccggaccccaccgagctcccggcaggggaagcacgtggagtctggg actgtccaattccgtgtttccactgattcggaagaacatcttgtatctgctgcggagctc ctatgtaaagacagggacgagttgaagcagcctcctacgccatcgctgagagtgccaacc ccacggcgagtgccagtctccccacggggaccagggctgtcggtgtcccagctcgtggcc tcaccacggggcacaggccagaccctgcagcaggatgggggcatcacccacctagagacc aacctgggctcaccggacacagagccttgtgccagcgaccagctgcgggcactgcccttc acccctctgcagctgcccatggctgctgtggggctgcaggcaagcagtttccatgtgtcc ctctctcgtgcttcactggcccgcctgcacgctgccggctttccagacatcctggaccgc aaccaggagccagtggaaatctcggagccagtggagctgggcagtttcaacctgcagctg gaggaagctgaccctctgcaaggcaatgaaattgtcctgcagttcctggcttttgacagg gatgcccagggcagtgtggaggggctgtggccaaggactgtcttcctcaccttccagttc taccgtttcccaccggtcaccacgccccggctgcagctggtcagcacagacgggggtctg gcaactgggctggctgtgccggcacagctccttttccgtgtcaacgaggatgggacccta accaaaccaccaggcttgcagctgaagtacatggtggatccggctttcctgcggcctggg gagcagcgctggttcctgcggtacctggccgagcacagcctccagattgacgtctgggat ggggactccctgcttcatgttgggtctgctgccattaaactggagcccctgctgcgccag ggccggatggctgtcaggacctaccacgagttggaggtggccacgactgagtacgagccg gacgggacggtgatgggccgggaggctctgcggcacggcgccctgcggcccctcggtgtc cgtgtggctgtgaggggccgcctccacctctgcctggccaatgttggtcacccgtgtgag gggaccccaggacagctgccattccactcccgcattgtcactgcaccagacagcactgtc accaccccaggtggtggctggaactccctgaacactcctggtggcaggacagcgtgggcc cgcaggctggtggatgtggacaatgagctgcaggccgcactgcgcagtcgccggccagaa ggctggccaaagcagcgtgcctgggacctgcaggtcattgatgcctaccgggatcacatc aagggagagagcatctaccagatgctcagccaggccatcacagccacccgcactgtccac gctgtgctggggacagctgagttctttgagttcgccctgaagaacccgtacactgtccag cacactgtgaccatcgaggtcaacgaccctgagctcagtgtcatactggacccgagggag tggcgccacttcaaggagctgaccaagagtgttacaccagtggaggaggatatgttccat ctccgtgatgacctcaagcctcaggtctacctgcgccccagtgaaactgtccacatcccc ttcaaataccagaccttctctgcagaccctgctgtggttgcagcacaggggccggctggg ctgggcaccggtgccggtggggacactcactcccttgggaaaagcggggccaaacagaca aagctcatccaggtcaccttccaggtgagcggggggaagcccattgcactcctgcgggtg aaggtggagccgcagccccatgtggtggaccagacctttcgcttctaccacccagagctc accttcctgaagaaaaccattcgtctgcctccctggtacaccctccctggcacaccagtg ggggtgccaggcgggcagcctgagatgtttgttcgatgcagtgaccctgacatcatttgt gaaaccaaatccttggggcctggtgagccacaggacatcttcctcaaagtagccggagga ccaagcccgcagatcaaaaagttctttgttgctatttatatggacacctggctggcagca cctgtccagatctggcagttctacctgcactcgctgcagcgcctggacgtggcctgcaca gccgggcagctcacccgcctctccctgctgctgcgtggcaccgcggccccgcggagggtg cgggccttcacctcccacccccaggagctggagatggatccaagcggtgccttccttctc cccgccaatggcattcaggacctgtatatcggtgtgaggccacggcgggctggcagcaag ttcatctacctcaacttggtggacgtggagtcccaccagctggtgtcctcctggctgctc tgcctgtcctgcaggcagcccctcatctccaaggcctttgagatctcgctgcctgtggga ggtgggaaaggctgcaacaagcgcatcacctacaccaacccctacccctcaccccggctc tacttcttatgcaccaaccgccccgacctgctgcagttcaaggaggattccttcgaggtg gctggaggggaggtgtacaccatcggcctgcgcttcgccccgagccagacagtgggggag gaggagatcctgattcacatcaatgaccacgaggacaagaacgaggagaccttctgcgtg aaggtcctgtaccagtga

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