Cyanistes caeruleus (blue tit): 111939163
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Entry
111939163 CDS
T05602
Symbol
COL9A2
Name
(RefSeq) collagen alpha-2(IX) chain isoform X1
KO
K08131
collagen type IX alpha
Organism
ccae
Cyanistes caeruleus (blue tit)
Pathway
ccae04510
Focal adhesion
ccae04512
ECM-receptor interaction
ccae04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ccae00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
111939163 (COL9A2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
111939163 (COL9A2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
111939163 (COL9A2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
ccae00535
]
111939163 (COL9A2)
Proteoglycans [BR:
ccae00535
]
Extracellular matrix (ECM) proteoglycans
Others
111939163 (COL9A2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
111939163
NCBI-ProteinID:
XP_023797032
LinkDB
All DBs
Position
23
AA seq
718 aa
AA seq
DB search
MSWICPSTQSSDPSACSPSQLPGIPAAFQRLPVLPTHPGVHPDVDPIPFSPQRGPPGEPG
PRGPPGPSGVPGADGIDGDKGPAGAPGSPGVKGEPGAPGPDGPPGKPGIDGLTGAKGEPG
PIGRPGVKGQPGLPGPPGLPGPSLPGPPGLPGQVGLPGEIGVLGPKGDPGPDGPRGPPGP
PGKPGLPGHLQGLEGSADFLCPTSCPPGPKGPQGLQGLKGHRGRPGALGEPGKQGEPGPK
GDVGASGEQGVPGPPGPQGLRGYPGMAGPKGETGPAGYKGMVGSIGAAGRPGREGPKGPP
GDPGDKGELGGRGIRGPQGDTGPKGENGLPGIDGKDGTPGIPGVKGGTGQAGRPGTPGHR
GQAGLPGQPGSKGGPGDKGEAGPRGHPGVTGAPGQLGEPGPRGEQGPQGVPGLKGDRGER
GLVGPPGEQGRVGPKGEQGPPGIPGPQGLPGVKGDKGSPGKTGPKGSIGDPGVHGLAGLK
GEKGESGEPGPKGQQGIQGDLGFPGPSGDAGAPGIRGYPGPPGPRGLVGERGVPGMPGPR
GTAGRDAGDQHIVDVVLKMLQEQLAEVAVSAKRAALGGVGAMGPPGPPGPPGPPGEQGPH
GPMGPRGVPGILGAAGQIGNVGPKGKRGEKGERGEVGRGHPGMPGPPGIPGLPGVPGHAV
DGKAGERGLPGSPGEAGRPGLPGPPGFPGFCEPAACLGASAYAAARLTEPGSVKGPLY
NT seq
2157 nt
NT seq
+upstream
nt +downstream
nt
atgtcctggatttgcccatccacgcagagctccgacccctcggcgtgttctccatcccag
ctccctggaattcccgctgcattccagaggctccctgtgctccccacacatcctggggtc
catcctgacgtggatcccatccctttctccccacagcgagggcctccaggagagcccggc
ccacgggggccccccggtccctcaggagtgccgggagccgatggcatcgacggtgacaaa
ggtcccgccggagccccgggatccccgggtgtcaagggcgagcctggagcccctgggccg
gatggacctccagggaagccgggcattgatggcctgacgggagcgaaaggggagccagga
cctatcggcaggccaggagttaaaggccagcctggactcccagggccaccagggctccct
ggtccttcactgccaggaccccctgggcttccaggccaggttggacttcctggagagatc
ggggtgctgggacccaagggtgatcccggacccgacggccccagaggtcccccaggccct
ccagggaaacctggcctcccgggacacctccaaggcctggaaggcagcgctgatttcctg
tgccccaccagctgccccccaggtcccaagggcccccagggactgcagggactgaaggga
cacagaggccgccccggggccctcggagagcccggcaagcagggagagccgggccccaag
ggggacgttggtgcttctggagaacaaggagtcccaggccctccgggacctcagggcctc
aggggttaccctggcatggcaggacccaagggagagacgggtcctgctgggtacaagggt
atggtcggcagcatcggagcagcggggcggccgggcagggaaggccccaagggaccacct
ggggaccctggtgacaagggagagctgggtggccgtggcatcaggggaccccagggtgac
accggccccaagggcgagaatggcctccctggcatcgatggcaaggacggcaccccaggt
atccctggagtgaagggtggcacaggacaggccggacgcccgggaacgccgggacaccgg
ggacaagctggattgccgggccagccgggaagcaaaggtggcccaggtgacaagggtgaa
gctggtcctcggggccaccccggtgtcaccggtgccccagggcagctcggcgagcccgga
cctcggggtgagcagggcccgcagggtgtccccgggctgaagggtgacaggggtgagcgt
ggcctcgtggggccccccggcgagcagggcagagtggggccgaagggcgagcagggccca
ccgggcatcccaggaccccaaggcttgccaggagtcaaaggagacaagggctctccaggg
aaaaccggccccaaaggcagcattggagatccgggtgtccacggcctggcagggctcaag
ggagagaagggggaatcaggagagccaggacccaagggacagcaaggcatccagggagac
ctcggctttccgggcccttcgggggatgccggagcaccgggaattcggggttatcccggc
ccgcccggcccgcgggggctcgtgggggagcgcggggtgccgggaatgccggggccgcgg
ggcacagccggccgggatgctggggaccagcacatcgtggatgtggtgctgaagatgctg
caagagcagctggcagaggtggctgtgagtgccaagagagctgccctgggtggggtcggg
gccatgggaccccctggcccccccgggcccccagggccgcctggtgagcagggtccccac
ggccccatgggaccccgaggtgtccctggaatcctgggagctgcagggcagatcgggaat
gtcggacccaaagggaagagaggagagaagggcgagcggggagaagttggccgtggccac
ccaggaatgccaggtcctccagggatcccaggtctcccgggcgttccgggccatgctgtg
gatggcaaagcaggggagcggggcctgccgggctccccgggtgaggctggcaggccggga
ttgccgggccccccgggattcccgggattttgcgagccggccgcgtgcctgggagcctcg
gcctacgcggccgctcgcctcacagagccagggagcgtgaagggccccctgtactga
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